Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Reverse (-)

12947114 .. 12962546

Gene Structure 15433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG158200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCATGTGACTGATTGCCTTCGGAATCGTCGATGCCAAAGCTGGTTCTTCATTAGGAAATCACTTGGTAAAGCTGCATGCCTGGCAAACAATTCCATCACCGTTTCAACAACCGCAAGGACTAAGGACGCATATGCTATTGACAAGGCTCAGTGTCTGCTTGAACTTTTGTCTGCAACTGATGTTCCGCCGTCCATGGTAGACACAATTACTGCTGTGTCTGCCGTGGGCGATTCATCTACACTACCTCGCCTCAGCCCTGGGGAGTATTTAGAAATTTGCATTACCAGTATTTTGCCTTCAATGGATGATATTGGGGACGAGATGGAGAAGTCTTGCCCTTTGATGAACGAAGGTGACCTGCTTGAAGCTTCCTCTCTATATTCCTTATTGGATGAAAAACAAGGTGCTTTTCTGTCTCGCTCTTATGTTGTTTTGTTTGCTGTTTGGCTGATCAGCTATTCTGATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.2

Weight (kDa)

4.6

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	114, 188
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	108, 164, 303, 368
AjnI	CCWGG	2 cut(s)	81, 259
AluBI	AGCT	4 cut(s)	42, 74, 371, 459
AluI	AGCT	4 cut(s)	42, 74, 371, 459
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	91, 368
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	104, 319
BceAI	ACGGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	83, 261
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	83, 261
BmrFI	CCNGG	2 cut(s)	83, 261
BmsI	GCATC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	195, 225, 259, 260
Bse1I	ACTGG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	83, 261
BseDI	CCNNGG	4 cut(s)	195, 225, 259, 260
BseGI	GGATG	2 cut(s)	313, 400
BseMII	CTCAG	2 cut(s)	164, 268
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	453, 466
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	114, 188
BspCNI	CTCAG	2 cut(s)	163, 267
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	4 cut(s)	195, 225, 259, 260
BssMI	GATC	2 cut(s)	453, 466
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	83, 261
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	123, 150, 254
BstDSI	CCRYGG	2 cut(s)	195, 225
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	313, 400
BstKTI	GATC	2 cut(s)	456, 469
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	453, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 221
BstNI	CCWGG	2 cut(s)	83, 261
BstNSI	RCATGY	2 cut(s)	8, 81
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	81, 259
BstV1I	GCAGC	1 cut(s)	61
BtgI	CCRYGG	2 cut(s)	195, 225
BtsCI	GGATG	2 cut(s)	313, 400
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	157
CseI	GACGC	1 cut(s)	137
CviAII	CATG	3 cut(s)	5, 78, 196
CviJI	RGCY	7 cut(s)	42, 74, 149, 258, 371, 451, 459
CviKI_1	RGCY	7 cut(s)	42, 74, 149, 258, 371, 451, 459
DdeI	CTNAG	3 cut(s)	123, 150, 254
DpnI	GATC	2 cut(s)	455, 468
DpnII	GATC	2 cut(s)	453, 466
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	81, 259
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	8, 81, 199
FaiI	YATR	7 cut(s)	6, 79, 133, 135, 197, 382, 429
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	4, 77, 195
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	320, 407
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	8, 81, 199
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	25, 233
HphI	GGTGA	2 cut(s)	91, 368
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	24, 466
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	29, 309, 347
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	4, 77, 176, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 221
HpyF3I	CTNAG	3 cut(s)	123, 150, 254
Hsp92II	CATG	3 cut(s)	8, 81, 199
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	453, 466
LpnPI	CCDG	7 cut(s)	28, 68, 95, 246, 273, 301, 374
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	7, 356
MalI	GATC	2 cut(s)	455, 468
MboI	GATC	2 cut(s)	453, 466
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	3 cut(s)	91, 207, 276
MnlI	CCTC	3 cut(s)	258, 263, 385
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	83, 261
MvaI	CCWGG	2 cut(s)	83, 261
MwoI	GCNNNNNNNGC	2 cut(s)	83, 221
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	453, 466
NlaIII	CATG	3 cut(s)	8, 81, 199
NmuCI	GTSAC	2 cut(s)	7, 356
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 81
PaeI	GCATGC	1 cut(s)	81
PasI	CCCWGGG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	25, 233
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	81, 259
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	81, 259
PstNI	CAGNNNCTG	1 cut(s)	157
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	453, 466
ScrFI	CCNGG	2 cut(s)	83, 261
SetI	ASST	8 cut(s)	44, 76, 250, 358, 363, 373, 409, 461
SfaNI	GCATC	1 cut(s)	23
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	3 cut(s)	91, 207, 276
SsiI	CCGC	2 cut(s)	114, 188
StyD4I	CCNGG	2 cut(s)	81, 259
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	91, 207, 276
TfiI	GAWTC	2 cut(s)	25, 233
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	7, 356
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	7, 356
TspDTI	ATGAA	4 cut(s)	40, 225, 362, 411
TspRI	CASTG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	2 cut(s)	8, 81
XmiI	GTMKAC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.