Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Reverse (-)

12943432 .. 12944975

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCTTTGTGTCACTGATAACAAAGTTTACAATGATAACCAAGTTTTGATGGTGACATTTGCCATCTTGGATCTCCGTCTCTTGAGCCTCCTTTTACAATACACCTATAAGAACAACGACTGTGGCATGACGGTCTCAATAGCAAGAAGCATTGGGGATTCAGATATTGTTGGGAAGGCTTGGGATCTTCTTCGACTCATGTCAGCAACTAAAGTTCCGGTTCTTTTGGCAGAGATGATACTGAAAGGCACTCTGCATTGTGTCTTCATCAAGACTGGGTATGACGGTGGCCTTTGCTCAAAAATTGGGATCGAGATGCGTCAATTTTATCAAGTACTGCTGCCACGTCTTGAGTGCATCTTGAAGAATGCTGCAAGCCGAGCAGGTTGCAAGCTTTTGATCAAGGATGAAACTATAATTGTGTTGGGGAAATATCCTGCAGTCTTAAATTTGTTTGAGATGCGTGCACGGAAATGGCTGGAAGAACACAAGGATGATAAGGATGATTATGAAAGTCGCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

175

Amino Acids

19.9

Weight (kDa)

8.16

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AclWI	GGATC	3 cut(s)	78, 192, 317
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	347
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	83, 139
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	78, 192, 317
AoxI	GGCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	340, 371
ApoI	RAATTY	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	327, 358
BccI	CCATC	2 cut(s)	43, 71
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	83, 139
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	341, 372
BlsI	GCNGC	2 cut(s)	342, 373
BmcAI	AGTACT	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	3 cut(s)	306, 366, 450
BmuI	ACTGGG	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	103, 371
BsaI	GGTCTC	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	412, 499, 508
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	327, 358
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	83, 139
BsmBI	CGTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	70, 184, 309, 399
BspANI	GGCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	78, 192, 317
BspTNI	GGTCTC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	70, 184, 309, 399
Bst4CI	ACNGT	3 cut(s)	122, 133, 287
BstC8I	GCNNGC	3 cut(s)	376, 392, 465
BstF5I	GGATG	3 cut(s)	412, 499, 508
BstKTI	GATC	4 cut(s)	73, 187, 312, 402
BstMAI	GTCTC	2 cut(s)	83, 139
BstMBI	GATC	4 cut(s)	70, 184, 309, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstPAI	GACNNNNGTC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	327, 358
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	70, 184
BstYI	RGATCY	2 cut(s)	70, 184
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	3 cut(s)	412, 499, 508
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	3 cut(s)	376, 392, 465
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	2 cut(s)	127, 199
CviJI	RGCY	6 cut(s)	87, 179, 291, 378, 394, 478
CviKI_1	RGCY	6 cut(s)	87, 179, 291, 378, 394, 478
CviQI	GTAC	1 cut(s)	335
DpnI	GATC	4 cut(s)	72, 186, 311, 401
DpnII	GATC	4 cut(s)	70, 184, 309, 399
Eco31I	GGTCTC	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	130, 202
FaiI	YATR	6 cut(s)	108, 128, 200, 282, 416, 510
FatI	CATG	2 cut(s)	126, 198
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	341, 372
FokI	GGATG	3 cut(s)	419, 506, 515
Fsp4HI	GCNGC	2 cut(s)	341, 372
GluI	GCNGC	2 cut(s)	341, 372
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	130, 202
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	158, 195
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	28, 467
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	5 cut(s)	82, 271, 313, 350, 361
Hpy8I	GTNNAC	2 cut(s)	28, 467
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	3 cut(s)	122, 133, 287
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	256, 357, 374, 390, 440, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	130, 202
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	70, 184, 309, 399
LpnPI	CCDG	5 cut(s)	231, 261, 369, 450, 464
Lsp1109I	GCAGC	2 cut(s)	327, 358
LweI	GCATC	3 cut(s)	306, 366, 450
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	10, 52
MalI	GATC	4 cut(s)	72, 186, 311, 401
MboI	GATC	4 cut(s)	70, 184, 309, 399
MboII	GAAGA	5 cut(s)	179, 182, 256, 376, 494
MflI	RGATCY	2 cut(s)	70, 184
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	4 cut(s)	303, 323, 417, 448
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	98
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	2 cut(s)	472, 492
MspI	CCGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	4 cut(s)	70, 184, 309, 399
NlaIII	CATG	2 cut(s)	130, 202
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	2 cut(s)	10, 52
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	342, 373
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PshAI	GACNNNNGTC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	70, 184
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	472, 492
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	341, 372
Sau3AI	GATC	4 cut(s)	70, 184, 309, 399
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	4 cut(s)	107, 349, 388, 396
SfaNI	GCATC	3 cut(s)	306, 366, 450
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	472, 492
SmlI	CTYRAG	2 cut(s)	82, 350
SmoI	CTYRAG	2 cut(s)	82, 350
Sse9I	AATT	4 cut(s)	303, 323, 417, 448
TaaI	ACNGT	3 cut(s)	122, 133, 287
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	193, 312
TasI	AATT	4 cut(s)	303, 323, 417, 448
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	10, 52
TseI	GCWGC	2 cut(s)	340, 371
Tsp45I	GTSAC	2 cut(s)	10, 52
TspDTI	ATGAA	3 cut(s)	256, 423, 525
TspGWI	ACGGA	2 cut(s)	65, 484
TspRI	CASTG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	465
XapI	RAATTY	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.