Rw7G013070

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012698
Physical Location & Seq
Reverse (-)
12401536 .. 12405119
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G013070.1

Sequence Viewer

Length: 627 bp
ATGGACAGCATGGAGGTGGACGGTTCCGGCCCTTCAAAGACCTCCTACGGGTTTCTGATAAAATTGACCGCCTCAGCGCCTTATGTATCCGATGCGATGCGCCATTGGTTGAGGTCTCTTAAAGCTCAGGACCGCAAGAAGATATTGGCCTTCGAGCAGAAGGAGGCGGAGATGTTGGCCCTCATGGAGAAGGAGGCGGGGATGTTGGCCCGCATGGAGACGGCGAGGTTGGCCCGCCTGGATACGGCGAGGGAGATGGAGACTGGCGGCCCTGCTGGTGGCGCGTTTGGAGTGACCTCTTTCACTAACTTCTTCCCCAAAGAACGAGCATCAATGATGCTGCAAGCTTGGCCTATGCTGGAATCTTCCTTACAAGACTTTGGCATTTCAAGCTCTCTCAATAGCGTAGACACAATTACTGCTGTGTCTGCCGTGGGCGATTCATCTACACTACCTCGCCTCAGCCCTGCGGAGTATTTAGAAATTTGCATTACCAGTATTTTGCCTTCAATGGATGATATTGGGGACGAGATGGAGAAGTCTTGCCCTTTGATGAACGAAGGTGACCTGCTTGAAGCTTCCTCTCTATATTCCTTGTTGGATGAAAAACAAGGAGGAGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.61

Weight (kDa)

4.56

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 284
AciI CCGC 8 cut(s) 69, 133, 167, 197, 211, 235, 267, 470
AcsI RAATTY 1 cut(s) 483
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 3 cut(s) 48, 244, 278
AgsI TTSAA 4 cut(s) 36, 390, 510, 575
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 4 cut(s) 125, 347, 393, 578
AluI AGCT 4 cut(s) 125, 347, 393, 578
Alw26I GTCTC 3 cut(s) 120, 212, 254
AoxI GGCC 7 cut(s) 28, 147, 177, 207, 231, 268, 350
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 483
AspLEI GCGC 3 cut(s) 79, 102, 284
AspS9I GGNCC 6 cut(s) 29, 130, 178, 208, 232, 269
AsuHPI GGTGA 1 cut(s) 575
AvaII GGWCC 1 cut(s) 130
BarI GAAGNNNNNNTAC 2 cut(s) 490, 522
BbvCI CCTCAGC 2 cut(s) 73, 461
BbvI GCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 250, 526
BceAI ACGGC 3 cut(s) 237, 261, 416
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 2 cut(s) 97, 235
BcoDI GTCTC 3 cut(s) 120, 212, 254
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 576
BfuI GTATCC 2 cut(s) 97, 235
BisI GCNGC 2 cut(s) 268, 341
BlsI GCNGC 2 cut(s) 269, 342
BmcAI AGTACT 1 cut(s) 621
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 6 cut(s) 29, 130, 178, 208, 232, 269
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 4 cut(s) 82, 87, 327, 338
Bpu10I CCTNAGC 3 cut(s) 73, 126, 461
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 432
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 244, 278
Bse1I ACTGG 2 cut(s) 268, 495
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 3 cut(s) 207, 520, 607
BseLI CCNNNNNNNGG 3 cut(s) 48, 244, 278
BseMII CTCAG 3 cut(s) 87, 140, 475
BseNI ACTGG 2 cut(s) 268, 495
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 7 cut(s) 30, 149, 179, 209, 233, 270, 352
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 48, 244, 278
BsmAI GTCTC 3 cut(s) 120, 212, 254
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 7 cut(s) 30, 149, 179, 209, 233, 270, 352
Bso31I GGTCTC 1 cut(s) 120
BspACI CCGC 8 cut(s) 69, 133, 167, 197, 211, 235, 267, 470
BspANI GGCC 7 cut(s) 30, 149, 179, 209, 233, 270, 352
BspCNI CTCAG 3 cut(s) 86, 139, 474
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 268, 495
BssECI CCNNGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 23, 624
BstC8I GCNNGC 3 cut(s) 211, 235, 345
BstDEI CTNAG 3 cut(s) 73, 126, 461
BstDSI CCRYGG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 3 cut(s) 207, 520, 607
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 3 cut(s) 79, 102, 284
BstMAI GTCTC 3 cut(s) 120, 212, 254
BstMWI GCNNNNNNNGC 5 cut(s) 230, 281, 349, 390, 428
BstNI CCWGG 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 327
BsuI GTATCC 2 cut(s) 97, 235
BsuRI GGCC 7 cut(s) 30, 149, 179, 209, 233, 270, 352
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 207, 520, 607
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 3 cut(s) 211, 235, 345
CfoI GCGC 3 cut(s) 79, 102, 284
Cfr13I GGNCC 6 cut(s) 29, 130, 178, 208, 232, 269
Csp6I GTAC 1 cut(s) 620
CviAII CATG 3 cut(s) 10, 184, 214
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 3 cut(s) 73, 126, 461
EciI GGCGGA 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 3 cut(s) 13, 187, 217
FaiI YATR 6 cut(s) 11, 84, 185, 215, 356, 589
FaqI GGGAC 1 cut(s) 539
FatI CATG 3 cut(s) 9, 183, 213
FauI CCCGC 3 cut(s) 190, 218, 242
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 268, 341
FokI GGATG 3 cut(s) 214, 527, 614
Fsp4HI GCNGC 2 cut(s) 268, 341
GlaI GCGC 3 cut(s) 78, 101, 283
GluI GCNGC 2 cut(s) 268, 341
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 7 cut(s) 30, 149, 179, 209, 233, 270, 352
HapII CCGG 1 cut(s) 27
HhaI GCGC 3 cut(s) 79, 102, 284
Hin1II CATG 3 cut(s) 13, 187, 217
Hin6I GCGC 3 cut(s) 77, 100, 282
HinP1I GCGC 3 cut(s) 77, 100, 282
HindIII AAGCTT 2 cut(s) 345, 576
HinfI GANTC 2 cut(s) 362, 440
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 2 cut(s) 19, 409
Hpy188I TCNGA 2 cut(s) 57, 91
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 19, 409
HpyAV CCTTC 6 cut(s) 42, 154, 160, 184, 516, 554
HpyCH4III ACNGT 2 cut(s) 23, 624
HpyCH4V TGCA 2 cut(s) 343, 489
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 281, 349, 390, 428
HpyF3I CTNAG 3 cut(s) 73, 126, 461
Hsp92II CATG 3 cut(s) 13, 187, 217
HspAI GCGC 3 cut(s) 77, 100, 282
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 4 cut(s) 82, 87, 327, 338
MaeIII GTNAC 2 cut(s) 292, 563
MboII GAAGA 3 cut(s) 151, 304, 357
MluCI AATT 3 cut(s) 62, 414, 483
MmeI TCCRAC 1 cut(s) 579
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 5 cut(s) 230, 281, 349, 390, 428
NlaIII CATG 3 cut(s) 13, 187, 217
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 292, 563
PfeI GAWTC 2 cut(s) 362, 440
PkrI GCNGC 2 cut(s) 269, 342
Psp6I CCWGG 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 6 cut(s) 29, 130, 178, 208, 232, 269
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 268, 341
Sau96I GGNCC 6 cut(s) 29, 130, 178, 208, 232, 269
ScaI AGTACT 1 cut(s) 621
ScrFI CCNGG 1 cut(s) 239
SfaNI GCATC 4 cut(s) 82, 87, 327, 338
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 3 cut(s) 62, 414, 483
SsiI CCGC 8 cut(s) 69, 133, 167, 197, 211, 235, 267, 470
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 23, 624
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 62, 414, 483
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 362, 440
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 2 cut(s) 292, 563
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 2 cut(s) 292, 563
TspDTI ATGAA 3 cut(s) 432, 569, 618
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 408
ZrmI AGTACT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.