Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Forward (+)

54716407 .. 54720504

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00260270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGATGAAGTATGACGGCATGGCTGAGATCACCTGTTTCTGTAGGTTATACGCTAATGCGACCGTGTTGGAAAAAGATTGGCAGATGTTGCAGTCGTGTTTGAAGGATTACAGCAATATTTCATGCACACTGGTTGCGAACGACTGTGGCATGACGGCCTCAATAGCCAGAAGCATTGGGGATTCAGATATTGTTGGGAAGGCTTGGGATCTTCTTCGACTCATGTCAGCAACTAAAGTTCCGGTTCTTTTGGCAGAGATGATACTGAAAGGCACTCTGCATTGTGTCTTCATCAAGACTGGGTATGACGGTGGCCTTTGCTCAAAAATTGGGATCGAGATGCGTCAATTTTATCAAGTACTGCTGCCACGTCTTGAGTGCATCTTGAAGAATGCTGCAAGCCGAGCAGGTTGCAAGCTTTTGATCAAGGGTGAAACTATAATTGTGTTGGGGAAATATCCTGCGGTCTTAAATTTGTTCGAGATGCGTGCACGGAAATGGCTGGAAGAACACAAGGATGATGATTATGAAAGTCGCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

8.33

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	2 cut(s)	219, 344
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	106, 391
AjiI	CACGTC	1 cut(s)	374
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw21I	GWGCWC	1 cut(s)	496
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	219, 344
AoxI	GGCC	2 cut(s)	159, 316
ApaLI	GTGCAC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	367, 398
ApoI	RAATTY	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	25, 446
BaeGI	GKGCMC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	354, 385
BceAI	ACGGC	2 cut(s)	34, 174
BcgI	CGANNNNNNTGC	4 cut(s)	396, 430, 473, 507
BclI	TGATCA	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	368, 399
BlsI	GCNGC	2 cut(s)	369, 400
BmcAI	AGTACT	1 cut(s)	363
BmgBI	CACGTC	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	333, 393, 477
BmuI	ACTGGG	1 cut(s)	312
BoxI	GACNNNNGTC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	138, 307
BseGI	GGATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	138, 307
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	354, 385
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	161, 318
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	161, 318
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	4 cut(s)	30, 211, 336, 426
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	161, 318
BspCNI	CTCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	219, 344
BsrI	ACTGG	2 cut(s)	138, 307
BssMI	GATC	4 cut(s)	30, 211, 336, 426
Bst4CI	ACNGT	3 cut(s)	67, 149, 314
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	403, 419, 492
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	33, 214, 339, 429
BstMBI	GATC	4 cut(s)	30, 211, 336, 426
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 167, 407
BstPAI	GACNNNNGTC	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	354, 385
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	161, 318
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	403, 419, 492
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	4 cut(s)	22, 126, 154, 226
CviJI	RGCY	8 cut(s)	26, 161, 170, 206, 318, 405, 421, 505
CviKI_1	RGCY	8 cut(s)	26, 161, 170, 206, 318, 405, 421, 505
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	32, 213, 338, 428
DpnII	GATC	4 cut(s)	30, 211, 336, 426
FaeI	CATG	4 cut(s)	25, 129, 157, 229
FaiI	YATR	9 cut(s)	15, 23, 52, 127, 155, 227, 309, 443, 531
FatI	CATG	4 cut(s)	21, 125, 153, 225
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	368, 399
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	368, 399
GluI	GCNGC	2 cut(s)	368, 399
HaeIII	GGCC	2 cut(s)	161, 318
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	25, 129, 157, 229
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	185, 222
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	25, 446
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	5 cut(s)	298, 340, 377, 388, 484
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	100, 196
HpyCH4III	ACNGT	3 cut(s)	67, 149, 314
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	7 cut(s)	94, 129, 283, 384, 401, 417, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 167, 407
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	25, 129, 157, 229
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	30, 211, 336, 426
LpnPI	CCDG	8 cut(s)	49, 119, 184, 258, 288, 396, 477, 491
Lsp1109I	GCAGC	2 cut(s)	354, 385
LweI	GCATC	3 cut(s)	333, 393, 477
MaeII	ACGT	1 cut(s)	373
MalI	GATC	4 cut(s)	32, 213, 338, 428
MboI	GATC	4 cut(s)	30, 211, 336, 426
MboII	GAAGA	6 cut(s)	16, 206, 209, 283, 403, 521
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	4 cut(s)	330, 350, 444, 475
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	2 cut(s)	499, 519
MspI	CCGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	91, 167, 407
NdeII	GATC	4 cut(s)	30, 211, 336, 426
NlaIII	CATG	4 cut(s)	25, 129, 157, 229
NmeAIII	GCCGAG	1 cut(s)	431
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	369, 400
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	2 cut(s)	499, 519
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	2 cut(s)	368, 399
Sau3AI	GATC	4 cut(s)	30, 211, 336, 426
ScaI	AGTACT	1 cut(s)	363
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	5 cut(s)	38, 50, 376, 415, 423
SfaNI	GCATC	3 cut(s)	333, 393, 477
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	499, 519
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	4 cut(s)	330, 350, 444, 475
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	67, 149, 314
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	220, 339, 483
TasI	AATT	4 cut(s)	330, 350, 444, 475
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	367, 398
TspDTI	ATGAA	5 cut(s)	17, 23, 114, 283, 546
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	138
VneI	GTGCAC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	475
ZrmI	AGTACT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.