Rh4AG083700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012698
Physical Location & Seq
Forward (+)
17480927 .. 17481241
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG083700.1

Sequence Viewer

Length: 315 bp
ATGTTGGCCCTCATGGAGAAGGAGGCGGGGATGTTGGCCCGCATGGAGACGGCGAGGTTGGCCCGCCTGGATACGGCGAGGGAGATGGAGACTGGCGGCCCTGCTGGTGGCGCGTTTGGAGTGACCTCTTTCACTAACTTCTTCCCCAAAGAACGAGGTCTCATCTTCTATTCTACTCTGTTATCTCTCTCTCTCTCTAGTTACTGCCTCGTCTTAGCTTCTCAATTGTTTGGTTGTTTGTTGCTTGTTATTTTTTCAGCATCAAAGATGCTGCAAGCTTGGCCTATGCTGGGATCTTCCTTACACGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

6.55

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 4 cut(s) 26, 40, 64, 96
AclWI GGATC 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 73, 107, 290
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 218, 278
AluI AGCT 2 cut(s) 218, 278
Alw26I GTCTC 3 cut(s) 41, 83, 164
AlwI GGATC 1 cut(s) 301
AoxI GGCC 5 cut(s) 6, 36, 60, 97, 281
ApeKI GCWGC 1 cut(s) 271
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 4 cut(s) 7, 37, 61, 98
BbvI GCAGC 1 cut(s) 258
BccI CCATC 1 cut(s) 79
BceAI ACGGC 2 cut(s) 66, 90
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 41, 83, 164
BfaI CTAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 2 cut(s) 97, 272
BlsI GCNGC 2 cut(s) 98, 273
Bme1390I CCNGG 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 7, 37, 61, 98
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 258, 269
BsaI GGTCTC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 107, 290
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 73, 107, 290
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 5 cut(s) 8, 38, 62, 99, 283
BslI CCNNNNNNNGG 3 cut(s) 73, 107, 290
BsmAI GTCTC 3 cut(s) 41, 83, 164
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 5 cut(s) 8, 38, 62, 99, 283
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 4 cut(s) 26, 40, 64, 96
BspANI GGCC 5 cut(s) 8, 38, 62, 99, 283
BspFNI CGCG 1 cut(s) 113
BspPI GGATC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 40, 64, 276
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 3 cut(s) 41, 83, 164
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 3 cut(s) 59, 110, 280
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 5 cut(s) 8, 38, 62, 99, 283
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 40, 64, 276
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 4 cut(s) 7, 37, 61, 98
CviAII CATG 2 cut(s) 13, 43
CviJI RGCY 7 cut(s) 8, 38, 62, 99, 218, 278, 283
CviKI_1 RGCY 7 cut(s) 8, 38, 62, 99, 218, 278, 283
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 2 cut(s) 16, 46
FaiI YATR 3 cut(s) 14, 44, 287
FatI CATG 2 cut(s) 12, 42
FauI CCCGC 3 cut(s) 19, 47, 71
Fnu4HI GCNGC 2 cut(s) 97, 272
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 97, 272
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 97, 272
GsaI CCCAGC 1 cut(s) 293
HaeIII GGCC 5 cut(s) 8, 38, 62, 99, 283
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 16, 46
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 110, 280
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 2 cut(s) 16, 46
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 293
LpnPI CCDG 6 cut(s) 53, 78, 80, 90, 114, 275
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 258, 269
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 121, 200
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 133, 157, 288
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 293
MluCI AATT 1 cut(s) 224
MnlI CCTC 7 cut(s) 16, 20, 48, 72, 136, 149, 218
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 59, 110, 280
NdeII GATC 1 cut(s) 293
NlaIII CATG 2 cut(s) 16, 46
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 98, 273
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 4 cut(s) 7, 37, 61, 98
PsuI RGATCY 1 cut(s) 293
SatI GCNGC 2 cut(s) 97, 272
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 4 cut(s) 7, 37, 61, 98
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 59, 128, 160, 220, 280
SfaNI GCATC 2 cut(s) 258, 269
Sse9I AATT 1 cut(s) 224
SsiI CCGC 4 cut(s) 26, 40, 64, 96
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 66
TasI AATT 1 cut(s) 224
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 308
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 121
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.