Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Reverse (-)

12945152 .. 12946193

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGCGTGGAACATGATTACATCAAGATTGGTTTTCAAGAAGGTGGGCTTTGCTCAATACATGGGATCAAGGAGGTGCGTATTGCATAAATTTGGAGCAGTTGCACACACTGTTACTGCTGTGGGGACTTCACGTGAAGTAAGTCGTTTGATCAGGTTGATTGTGGAAGACTGCATCATTTCCAATGTGTGTCCTGCAACTGCCGCCAGGAATGTGAGTGATAACTTATTCGAAACATACCGACCAACTGAAAACACAGAGGACCCACACGTCGCGCACATGAAGATGAAGTATGACGGCATGGCTGAGATCACCTGTTTCTGTAGGTTATACGCTAATGGTATGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

118

Amino Acids

13.3

Weight (kDa)

8.93

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	92
AcvI	CACGTG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	209
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	2 cut(s)	6, 207
BlsI	GCNGC	2 cut(s)	7, 208
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	68, 153, 312
BspACI	CCGC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	234
BssMI	GATC	3 cut(s)	68, 153, 312
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	71, 156, 315
BstMBI	GATC	3 cut(s)	68, 153, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	111
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	4 cut(s)	16, 64, 283, 304
CviJI	RGCY	2 cut(s)	51, 308
CviKI_1	RGCY	2 cut(s)	51, 308
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	70, 155, 314
DpnII	GATC	3 cut(s)	68, 153, 312
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	19, 67, 286, 307
FaiI	YATR	9 cut(s)	17, 65, 90, 241, 284, 297, 305, 334, 347
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	4 cut(s)	15, 63, 282, 303
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	6, 207
Fsp4HI	GCNGC	2 cut(s)	6, 207
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	6, 207
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	19, 67, 286, 307
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HphI	GGTGA	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	2 cut(s)	27, 40
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	136, 273
HpyCH4V	TGCA	4 cut(s)	88, 107, 177, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	136, 273
Hsp92II	CATG	4 cut(s)	19, 67, 286, 307
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	68, 153, 312
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	142, 196, 210, 223, 331
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	2 cut(s)	136, 273
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	70, 155, 314
MboI	GATC	3 cut(s)	68, 153, 312
MboII	GAAGA	2 cut(s)	182, 298
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	2 cut(s)	69, 256
MslI	CAYNNNNRTG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	3 cut(s)	68, 153, 312
NlaIII	CATG	4 cut(s)	19, 67, 286, 307
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	7, 208
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	287
SatI	GCNGC	2 cut(s)	6, 207
Sau3AI	GATC	3 cut(s)	68, 153, 312
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	7 cut(s)	48, 80, 139, 161, 276, 320, 332
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	139, 276
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	299, 305
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.