Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010418.1

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Reverse (-)

21061 .. 25951

Gene Structure 4891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010418.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atgttggccctcatggagaaggaggcggggatgttggcccgcatggagactgcgaggttggcccgcctggataaggcgagggagagggagactggcggccctgctggtggcgcgtttggagtgacctctttcactaacttcttccccaaagaacgagcatcaaagatgctgcaagcttggcctatgctggaatcttccttacaagactttggcatttcaagctctctcaatagcgcaaacaattccatcaccgtttcaacaaccgcaaggactaaggacgcatatgctattgacaaggcccagtgtgtgcttgaacttttgtctgcaactgatgttccgccgtccatggcgcaatatcttcaattgttggaacgccccttccatttcctagaggtgcgttccacagtgtatccctttcatctctttcttaacgtagacacaattactgctgtgtctgccgtgggcgattcatctacactacctcgcctcagccctgcggagtatttagaaatttgcattaccagtattttgccttcaatggatgatattggggacgagatggagaagtcttgccctttgatgaacgaagcaaaaaggttacaagaaacttggccgttggtggagtctttcttaaaagagtatggtatttcatgctctctgaatgtggctgagcgtcacatgacattctcaacaaaaaggaccacagaaccatatattattgacaaggcttggtgtcttcttgaacttttgtcaacaactcatgttccagtgcctgtggcaatagatataatagatggcagcgtgaaacatgattacatcaagattggttttcaagaaggtgggctttgttcaatacatgggatcaaggaggaggagtactgtaaacgatggaattgtcttcgctggtcactacatgcactttcagaactgaagggttgtgatctgtttcttaatgcacacactgttactgctgtggggacttcacgtgaagtaagtcgtttgatcaggttgattgtggaagactgcatcatttccaatgtgtgtcctgcaactgctgccaggaatgtgagtgataacttattcgaaacataccgaccaactgaaaacacagaggacccacacgtcgcgcacatgaagatgaagtatgacggcatggctgagatcacctgtttctgtaggttatacgctaatgcgaccgtgttggaaaaagattggcagatgttgcagtcgtgtttgaaggattacagcaatatttcatgcacactggttgcgaacgactgtggcatgacggtctcaatagccagaagcattggggattcagatattgttgggaaggcttgggatcttcttcgactcatggcagcaactaaagttccggttcttgtggtaggaattgtgattctttgttatggttatctcttatatattaatgatctattctataagttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

484

Amino Acids

54.04

Weight (kDa)

5.43

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	113, 1127
AciI	CCGC	7 cut(s)	26, 40, 64, 96, 264, 338, 497
AclWI	GGATC	2 cut(s)	869, 1350
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	950
AcvI	CACGTG	1 cut(s)	986
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	2 cut(s)	73, 107
AflIII	ACRYGT	1 cut(s)	1120
AjiI	CACGTC	1 cut(s)	1123
AjnI	CCWGG	2 cut(s)	66, 1058
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	2 cut(s)	176, 222
AluI	AGCT	2 cut(s)	176, 222
Alw26I	GTCTC	3 cut(s)	41, 83, 1297
AlwI	GGATC	2 cut(s)	869, 1350
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	7 cut(s)	6, 36, 60, 97, 179, 297, 611
ApeKI	GCWGC	4 cut(s)	169, 798, 1055, 1361
ApoI	RAATTY	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	1428
AspLEI	GCGC	4 cut(s)	113, 236, 352, 1129
AspS9I	GGNCC	7 cut(s)	7, 37, 61, 98, 298, 699, 1114
AsuHPI	GGTGA	2 cut(s)	241, 1156
AsuII	TTCGAA	1 cut(s)	1083
AvaII	GGWCC	2 cut(s)	699, 1114
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbrPI	CACGTG	1 cut(s)	986
BbsI	GAAGAC	3 cut(s)	728, 890, 1026
BbvCI	CCTCAGC	1 cut(s)	488
BbvI	GCAGC	4 cut(s)	156, 810, 1042, 1373
BccI	CCATC	4 cut(s)	254, 553, 788, 882
BceAI	ACGGC	4 cut(s)	325, 443, 598, 1165
BciT130I	CCWGG	2 cut(s)	68, 1060
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	1002
BcoDI	GTCTC	3 cut(s)	41, 83, 1297
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	1174
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	97, 170, 799, 1056, 1362
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	5 cut(s)	98, 171, 800, 1057, 1363
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	2 cut(s)	68, 1060
Bme18I	GGWCC	2 cut(s)	699, 1114
BmgBI	CACGTC	1 cut(s)	1123
BmgT120I	GGNCC	7 cut(s)	7, 37, 61, 98, 298, 699, 1114
BmiI	GGNNCC	1 cut(s)	1116
BmrFI	CCNGG	2 cut(s)	68, 1060
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	156, 167, 1035
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	3 cut(s)	728, 890, 1026
Bpu10I	CCTNAGC	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	1083
BsaAI	YACGTR	1 cut(s)	986
BsaI	GGTCTC	1 cut(s)	1297
BsaJI	CCNNGG	2 cut(s)	345, 459
BsaWI	WCCGGW	1 cut(s)	1375
BsaXI	ACNNNNNCTCC	2 cut(s)	860, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 107
Bse1I	ACTGG	5 cut(s)	97, 301, 522, 767, 1269
BseBI	CCWGG	2 cut(s)	68, 1060
BseDI	CCNNGG	2 cut(s)	345, 459
BseGI	GGATG	2 cut(s)	36, 547
BseLI	CCNNNNNNNGG	2 cut(s)	73, 107
BseMII	CTCAG	3 cut(s)	502, 660, 1149
BseNI	ACTGG	5 cut(s)	97, 301, 522, 767, 1269
BseRI	GAGGAG	2 cut(s)	884, 887
BseXI	GCAGC	4 cut(s)	156, 810, 1042, 1373
Bsh1236I	CGCG	2 cut(s)	113, 1127
Bsh1285I	CGRYCG	1 cut(s)	1197
BshFI	GGCC	7 cut(s)	8, 38, 62, 99, 181, 299, 613
BsiEI	CGRYCG	1 cut(s)	1197
BsiSI	CCGG	1 cut(s)	1376
BslFI	GGGAC	2 cut(s)	566, 991
BslI	CCNNNNNNNGG	2 cut(s)	73, 107
BsmAI	GTCTC	3 cut(s)	41, 83, 1297
BsmFI	GGGAC	2 cut(s)	566, 991
BsnI	GGCC	7 cut(s)	8, 38, 62, 99, 181, 299, 613
Bso31I	GGTCTC	1 cut(s)	1297
Bsp119I	TTCGAA	1 cut(s)	1083
Bsp143I	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	7 cut(s)	26, 40, 64, 96, 264, 338, 497
BspANI	GGCC	7 cut(s)	8, 38, 62, 99, 181, 299, 613
BspCNI	CTCAG	3 cut(s)	501, 661, 1150
BspFNI	CGCG	2 cut(s)	113, 1127
BspLI	GGNNCC	1 cut(s)	1116
BspPI	GGATC	2 cut(s)	869, 1350
BspT104I	TTCGAA	1 cut(s)	1083
BspTNI	GGTCTC	1 cut(s)	1297
BsrI	ACTGG	5 cut(s)	97, 301, 522, 767, 1269
BssECI	CCNNGG	2 cut(s)	345, 459
BssMI	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	68, 1060
Bst4CI	ACNGT	7 cut(s)	253, 406, 881, 964, 1198, 1280, 1291
BstAPI	GCANNNNNTGC	2 cut(s)	1055, 1222
BstBAI	YACGTR	1 cut(s)	986
BstBI	TTCGAA	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	40, 64, 174
BstDEI	CTNAG	4 cut(s)	273, 488, 669, 1158
BstDSI	CCRYGG	2 cut(s)	345, 459
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	36, 547
BstFNI	CGCG	2 cut(s)	113, 1127
BstHHI	GCGC	4 cut(s)	113, 236, 352, 1129
BstKTI	GATC	6 cut(s)	864, 943, 1005, 1164, 1345, 1435
BstMAI	GTCTC	3 cut(s)	41, 83, 1297
BstMBI	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
BstMCI	CGRYCG	1 cut(s)	1197
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 110, 178, 219, 455, 1055, 1222
BstNI	CCWGG	2 cut(s)	68, 1060
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	2 cut(s)	66, 1058
BstSFI	CTRYAG	1 cut(s)	1174
BstUI	CGCG	2 cut(s)	113, 1127
BstV1I	GCAGC	4 cut(s)	156, 810, 1042, 1373
BstV2I	GAAGAC	3 cut(s)	728, 890, 1026
BstX2I	RGATCY	1 cut(s)	1342
BstYI	RGATCY	1 cut(s)	1342
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	7 cut(s)	8, 38, 62, 99, 181, 299, 613
BtgI	CCRYGG	2 cut(s)	345, 459
BtrI	CACGTC	1 cut(s)	1123
BtsCI	GGATG	2 cut(s)	36, 547
BtsIMutI	CAGTG	5 cut(s)	308, 411, 774, 960, 1262
Cac8I	GCNNGC	3 cut(s)	40, 64, 174
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	4 cut(s)	113, 236, 352, 1129
Cfr13I	GGNCC	7 cut(s)	7, 37, 61, 98, 298, 699, 1114
CseI	GACGC	2 cut(s)	287, 662
Csp6I	GTAC	1 cut(s)	877
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	4 cut(s)	273, 488, 669, 1158
DpnI	GATC	6 cut(s)	863, 942, 1004, 1163, 1344, 1434
DpnII	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
DrdI	GACNNNNNNGTC	1 cut(s)	1121
DseDI	GACNNNNNNGTC	1 cut(s)	1121
EaeI	YGGCCR	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	1297
Eco47I	GGWCC	2 cut(s)	699, 1114
Eco57I	CTGAAG	1 cut(s)	950
Eco72I	CACGTG	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRII	CCWGG	2 cut(s)	66, 1058
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	2 cut(s)	566, 991
FauI	CCCGC	3 cut(s)	19, 47, 71
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	1002
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	5 cut(s)	97, 170, 799, 1056, 1362
FokI	GGATG	2 cut(s)	43, 554
Fsp4HI	GCNGC	5 cut(s)	97, 170, 799, 1056, 1362
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	4 cut(s)	112, 235, 351, 1128
GluI	GCNGC	5 cut(s)	97, 170, 799, 1056, 1362
HaeIII	GGCC	7 cut(s)	8, 38, 62, 99, 181, 299, 613
HapII	CCGG	1 cut(s)	1376
HgaI	GACGC	2 cut(s)	287, 662
HhaI	GCGC	4 cut(s)	113, 236, 352, 1129
Hin6I	GCGC	4 cut(s)	111, 234, 350, 1127
HinP1I	GCGC	4 cut(s)	111, 234, 350, 1127
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	6 cut(s)	191, 467, 623, 1316, 1353, 1399
HpaII	CCGG	1 cut(s)	1376
HphI	GGTGA	2 cut(s)	241, 1156
Hpy166II	GTNNAC	3 cut(s)	436, 753, 884
Hpy188I	TCNGA	3 cut(s)	660, 925, 1321
Hpy188III	TCNNGA	3 cut(s)	740, 820, 833
Hpy8I	GTNNAC	3 cut(s)	436, 753, 884
Hpy99I	CGWCG	1 cut(s)	1127
HpyAV	CCTTC	7 cut(s)	13, 388, 543, 830, 925, 1231, 1327
HpyCH4III	ACNGT	7 cut(s)	253, 406, 881, 964, 1198, 1280, 1291
HpyCH4IV	ACGT	3 cut(s)	432, 985, 1122
HpyCH4V	TGCA	9 cut(s)	172, 326, 516, 917, 956, 1026, 1049, 1225, 1260
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 110, 178, 219, 455, 1055, 1222
HpyF3I	CTNAG	4 cut(s)	273, 488, 669, 1158
HpySE526I	ACGT	3 cut(s)	432, 985, 1122
HspAI	GCGC	4 cut(s)	111, 234, 350, 1127
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
Lsp1109I	GCAGC	4 cut(s)	156, 810, 1042, 1373
LweI	GCATC	3 cut(s)	156, 167, 1035
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	3 cut(s)	432, 985, 1122
MaeIII	GTNAC	5 cut(s)	121, 597, 674, 906, 964
MalI	GATC	6 cut(s)	863, 942, 1004, 1163, 1344, 1434
MboI	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
MboII	GAAGA	9 cut(s)	133, 186, 350, 728, 890, 1031, 1147, 1337, 1340
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	1342
MluCI	AATT	6 cut(s)	241, 362, 441, 510, 892, 1392
MlyI	GAGTC	2 cut(s)	632, 1347
MmeI	TCCRAC	2 cut(s)	348, 1182
MseI	TTAA	4 cut(s)	429, 632, 951, 1428
MslI	CAYNNNNRTG	1 cut(s)	1136
MspI	CCGG	1 cut(s)	1376
MspR9I	CCNGG	2 cut(s)	68, 1060
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	68, 1060
MvnI	CGCG	2 cut(s)	113, 1127
MwoI	GCNNNNNNNGC	7 cut(s)	59, 110, 178, 219, 455, 1055, 1222
NcoI	CCATGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
NlaIV	GGNNCC	1 cut(s)	1116
NmuCI	GTSAC	3 cut(s)	121, 674, 906
NspI	RCATGY	1 cut(s)	917
NspV	TTCGAA	1 cut(s)	1083
PfeI	GAWTC	4 cut(s)	191, 467, 1316, 1399
PkrI	GCNGC	5 cut(s)	98, 171, 800, 1057, 1363
PleI	GAGTC	2 cut(s)	631, 1347
PmaCI	CACGTG	1 cut(s)	986
PmlI	CACGTG	1 cut(s)	986
PpsI	GAGTC	2 cut(s)	631, 1347
Ppu21I	YACGTR	1 cut(s)	986
PpuMI	RGGWCCY	1 cut(s)	1114
PshBI	ATTAAT	1 cut(s)	1428
Psp5II	RGGWCCY	1 cut(s)	1114
Psp6I	CCWGG	2 cut(s)	66, 1058
PspCI	CACGTG	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	66, 1058
PspN4I	GGNNCC	1 cut(s)	1116
PspPI	GGNCC	7 cut(s)	7, 37, 61, 98, 298, 699, 1114
PspPPI	RGGWCCY	1 cut(s)	1114
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	1342
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	1 cut(s)	1136
SaqAI	TTAA	4 cut(s)	429, 632, 951, 1428
SatI	GCNGC	5 cut(s)	97, 170, 799, 1056, 1362
Sau3AI	GATC	6 cut(s)	861, 940, 1002, 1161, 1342, 1432
Sau96I	GGNCC	7 cut(s)	7, 37, 61, 98, 298, 699, 1114
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	2 cut(s)	632, 1347
ScrFI	CCNGG	2 cut(s)	68, 1060
SfaNI	GCATC	3 cut(s)	156, 167, 1035
SfcI	CTRYAG	1 cut(s)	1174
SfuI	TTCGAA	1 cut(s)	1083
SinI	GGWCC	2 cut(s)	699, 1114
SmiMI	CAYNNNNRTG	1 cut(s)	1136
Sse9I	AATT	6 cut(s)	241, 362, 441, 510, 892, 1392
SsiI	CCGC	7 cut(s)	26, 40, 64, 96, 264, 338, 497
SspI	AATATT	1 cut(s)	1252
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	66, 1058
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	7 cut(s)	253, 406, 881, 964, 1198, 1280, 1291
TaiI	ACGT	3 cut(s)	435, 988, 1125
TaqI	TCGA	2 cut(s)	1083, 1351
TasI	AATT	6 cut(s)	241, 362, 441, 510, 892, 1392
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	4 cut(s)	191, 467, 1316, 1399
Tru1I	TTAA	4 cut(s)	429, 632, 951, 1428
Tru9I	TTAA	4 cut(s)	429, 632, 951, 1428
TscAI	CASTG	5 cut(s)	308, 411, 774, 967, 1269
TseFI	GTSAC	3 cut(s)	121, 674, 906
TseI	GCWGC	4 cut(s)	169, 798, 1055, 1361
Tsp45I	GTSAC	3 cut(s)	121, 674, 906
TspDTI	ATGAA	7 cut(s)	407, 459, 596, 639, 1148, 1154, 1245
TspRI	CASTG	5 cut(s)	308, 411, 774, 967, 1269
VpaK11BI	GGWCC	2 cut(s)	699, 1114
VspI	ATTAAT	1 cut(s)	1428
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.