Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Forward (+)

17538938 .. 17551497

Gene Structure 12560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4380 bp

ATGGAAGATGAATTGTATAATGAAGAACTAGTGCCATGTGCTTGCATAACTGGGGTACATCTAAATGTTTCCACTCGGGAAGATACGGAGAAAATATCAACATTATTAATCGAGGCAGCTGCCCAGGTTAATGATCCAAAGTTGGGACTTCCAAATCCAACGAATCAGTGTTCTACTTGTGGTACCCAAGATATAAAATCCTGTGATGGTCATTTTGGGTCCATCAAGTTTCCGTGCACGATACTCCATCCATACTATCTACCGGAAGTTGCTCTTATTTTAAACAAGATTTGCCCGGCATGTAAAACCATCAGGCAAGGTGTAAGGGTCAAGGGATCTGAACGGAGGGGCTGCAGATATTGCTTTGGAGGTTCATCGGATTACCCTAGAATGAAGTTCAAAGTTTCTTCTAGAGAGCTTTTCAGAAGAAGTACAATAATAGTAGAAGCAGTTGGAAAATTGCCTCCTGATTATTGGGACTTCATTCCCAAAGATCCCCAACATGATGAAACACACACAAAACCAAATAGAAGAGTTCTATCTCATGCCCAGGTTCATTTTTTGTTGAATGATGTTGATCCAGATTTCATCACAAAGTTTGTTCCAACAACCAGCTCACTTTCTTTGGACTGTTTCCTTGTCACACCAAATTGTCATCGTGTGACAGAAGTTATGTATTCATTTAATAATGGGCAGTCATTGATGTTTGATGATCGGACTAGAGCTTACAGGAAACTAGTGGATTTCAGAGGCACCGCAAACGAGCTGGGTTCTCGTGTTTTGGACTGCCTGAAAATTTCCAAGGCAAGCTACTCAATAAACAAAGACAAAACAGGCAGAGATTCAATTTCAGTTGAGCAACAAAAGATTAAGGATTCTCCGTCCAGAACATCCGGCTTGAGATGGATAAAAGATGTTGTTCTTGGAAAGAGAAGTGATCACTGTTTTCGAACTGTTGTCGTTGGTGATCCAAACATCAAGCTGAGTGAGATTGGCATACCCCGCCATATTGCAGAGAAAATGCAGATCTCTGAGAATCTGAACCAATATAACCTTGACAAGTTGTATGCGTTTTGCCAGCTACGCCTTGGCCATCAGGGGAGAGGTGACATACATGTTCGTAGAAATGATAGTCTGGTTAGGATAAGTAATTTAGAAGAACTGGAGATGGGAGATATTATATACAGGGCGTTGAGTGATGGAGATGTTGTGTTGATAAATAGGCCTCCATCAATACATCAACACTCCCTAATAGCTTTAACTGCAAAGATCCTTCCAGTAAACTCTGTAGTGTCGATAAATCCACTGTGTTGCTCTCCTTTTCGTGGTGATTTTGATGGTGATTGCCTTCATGGTTATGTTCCTCAATCAGTGGATACCAGAGTCGAGCTTACAGAGCTTGTTGCTTTAGATAAGCAATTAGTTAATGGGCAGAGTGGTTCCAACCTTCTTTCTCTCAGTCAAGATAGTTTAACTGCTTGCTATCTCATCATGGAAGATGGCACCCTGATGAATAAGTTTCAAATGCAACAACTGAAAATGCTTTGTCCCCCTGAACTGCCATCACCAGCGATAATCAAAGATCCTTCTGGTAACTCCGTTTCTTGGACGGCAAAGCAGATAATCAGCATGTTTCTACCTGCAAATTTTAATTATGCATTTCCTTCAAATGGCGTGCATATTAGCAATGGAGAGCTTCTAGCTTCTTCTGAAGGTTCTTCTTGGCTGCGAGACACCAGTGGGAATCTTTTCCAAAGTCTCATCGAACATTGCCCCGGTCAGATACTGGACATCTTCTTTACTGCTCAGGGAGTTCTATGTGAGTGGTTGTCAATGAGGGGCTTGAGTGTTTCTCTCTCAGACTTGTATATCGCGTCGGATACATGTTCAAGGAAAAACTTGGTGGAGGAAATCTTCTATGGGTTACAAGAAGCAGAGGAGGCATGTACTATCAGACAGTTGATGCTTGATTCTTGTCAGGAATTTCTTATGGGCTATGCTGAAGAGACAAAAAGCCCTTTGACTTTTGGTTCAGAACATTTTTGTTATCAGAAGCAGAAATCTGCTGCACTTAGTCAGGTCACGGTAGATGCTTTCAAAGAAGGTTTCCGGGATGTCCAAAATTTAGCATACAAATATGCCCGTGAGGACAACTCGTTGCTGGCTATGTTTAAGGCTGGAAGCAAGGGTAATATGCTGAAATTAGTTCAGCATGGTATGTGCCTTGGTTTGCAGCATTCACTAGTTCCCTTATCATTCAAGTTTCCGAACCAGCTCTCATGTGATGCATGGAATGATCAAAAAGCACGTGGTATCGTTCAGGAGGTTGGAAGAGCTTTTGAATCCATCGAGTCATATATCCCATCCACTGTCGTTAAAAGTTCGTTCTTGACTGGGCTGAATCCGGTCGAATGCTTTGTTCATTCAGTCACGAGTCGAGATGGTTCTTTTAGTAATAATGCGGAACTTCCTGGGACTCTGAATCGAAAGCTCATGTATTTCATGCGTGATTTGCATACTGCTTATGACGGAACAGTTAGAAACGCATATGGGAACCAGCTGGTTCAGTTCTCCTATGATAATGACGAGGGCATATCTACTGCAGATAGCACCACAAACAGCTCATATGCAAAGAGTGTTATTGATTGTGGTGGCGGCCAACCCGTTGGTGCATTGTCTGCTTGTGCAATATCTGAAGCTGCATACAGTGCTTTAGATCAGCCAGTTAGTCTACTTGAAACTTCTCCTCTGCTAAATCTGAAGAACATTTTGGAGTGTGGTTCAAAGAAAAGGAGTGCTAAGCAAACTATGTCATTATTTTTATCTGAGAAGCTTGGAAGACCTAGGCATGGTTTCGAGTATGGAGCGCTAGAAGTTAAAAATCATCTAGAGGGACTCACATTTTCAGACATCGTTTCTACTGTCATGATAATGTTCTCCTCACAAACTGGCAGCAAGATGCATTTTAGTCCTTGGGTTTCTCACTTTCATATATCTAAGGAAATTGTACGAAGAAGAAGGCTGAATGTGCGATCTATTATAGAGGCACTTTATGCAAGATGCAACTCCGCTCCAGTGGAGTTGAAAATTATCCTTTGGAATTTGAAGATCACAAGAAATAAGGAATGTGATTGCTGCAGCACACCTAATGATACATTTTGCATCAGTGTCACACTGACTGAAAAGCAAGACAATTCTTCTGAAGAACTGGATAAAAAGCAAGACAAGTCTTCTGAAGAACTGGATAAAACTCGAGTCTTGGTGATACCATTCTTGCTTAAAACAGTAGTTAAAGGTTTTCTGGAGATAAAAAAGGTGGATATTATATGGAATGATCGAACTGGTTCACCTGGTGAACTCTACTTGAGAGTTTCTATGTCAGGAAAGACCAGAAGGGGGGCTACCTTTTGGAATATGCTTATGGACGATTGTCTTCCGGTTATGGATATGATTGATTGGTCACGAAGTCATCCAGATAACGTCGATGACTTCTGCACTGCCTATGGAATAGATGTTGGGTGGAAACATTTCCTTAATAAGTTGGAGTCTGCAACCGTAGATATTGGAAAGACAATTCTTCCGCAGCATTTGCTTCTTGCAGCAGATTGTCTGTCAGCCACCGGCGAGTTTGTCAGCTTAAACGCAAAAGGCATTGCTCAACAATTGGAACATGCATCTGTCACAGCCCCTTTTATGCAAGCTTGCTTTTCTACTCCTGGTCCTTGCTTGGTTAAAGCTGCTAAGGCTGGAGTGGTGGATAATCTCCAGGGGAGTTTGGACGCATTGACATGGGGAAATACTCCGTCCTTGGGAAGTGGTGGACAGTTTGATATTATATTTGCTGGGGAGGGATCTGTGTCTTCTAAGCCATTTGATGTTCATGATATGCTGAGCAGACAAATCAGTTCCAACCCCCAGAATGTATTTGAAATGTCTGATGCTCCAATTCATCTATCTGACAAATATGTTGCTCCACATGTGTACAAGTATGGTCTTTTGTGCAAGTTGAAGAGTATTACCAAATCAGTCTTAAGAGAAACTTTTACGATCCAGGATATTGATAGATTGTCTCAAACCTTGAAGAATATATTGCACAAGTATGACATCAATGAAAGCATAAATGAGATGGAGAAGAAAGATTTGATGACGGCTTTAGAATTTCACCCTCATAGGGATCGTAAGATCGGATTAGGAATCAAAGATATAAAGGTTGGCCAGCACCCTAACCATGAGAATGCACGATGCTTCATGCTAGTACATACGGATGGGACGATTGAAGATGTTTCGTACCACAAGTGCATCATTGGTGCTTTTGATATCATAGCTCCTCATAGGGCAAAGGGCTATCGCCTGAGACATTTGAGCCGTGGTCCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1459

Amino Acids

162.8

Weight (kDa)

6.63

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	43 - 104	4.5e-07	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	309 - 468	5e-35	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	473 - 622	1.1e-19	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	691 - 746	3.8e-08	RNA polymerase Rpb1, domain 4
DUF3223	PF11523	1361 - 1434	5.2e-25	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1648
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	3 cut(s)	182, 752, 1502
AccBSI	CCGCTC	1 cut(s)	3071
AccI	GTMKAC	1 cut(s)	2731
AccII	CGCG	1 cut(s)	1874
AciI	CCGC	6 cut(s)	756, 1003, 2462, 2655, 3069, 3581
AcoI	YGGCCR	3 cut(s)	1090, 2656, 4213
AcsI	RAATTY	6 cut(s)	795, 1645, 1982, 2122, 3100, 4157
AcuI	CTGAAG	6 cut(s)	1731, 2022, 2715, 2780, 3222, 3255
AcvI	CACGTG	1 cut(s)	2309
AdeI	CACNNNGTG	1 cut(s)	3353
AfaI	GTAC	8 cut(s)	57, 184, 433, 1948, 3009, 3983, 4257, 4289
AfeI	AGCGCT	1 cut(s)	2868
AfiI	CCNNNNNNNGG	8 cut(s)	143, 1325, 1605, 1670, 2849, 3396, 3809, 4171
AflII	CTTAAG	1 cut(s)	4030
AflIII	ACRYGT	3 cut(s)	1114, 1883, 3976
AhlI	ACTAGT	3 cut(s)	28, 736, 2242
AjnI	CCWGG	7 cut(s)	123, 549, 2470, 3349, 3715, 3765, 4050
AjuI	GAANNNNNNNTTGG	2 cut(s)	2753, 2785
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	5 cut(s)	1725, 1763, 2000, 4074, 4348
Alw44I	GTGCAC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	1786
Ama87I	CYCGRG	2 cut(s)	75, 3252
Aor51HI	AGCGCT	1 cut(s)	2868
AoxI	GGCC	4 cut(s)	1090, 1223, 2656, 4213
ApaLI	GTGCAC	1 cut(s)	235
ApoI	RAATTY	6 cut(s)	795, 1645, 1982, 2122, 3100, 4157
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	3 cut(s)	1748, 3343, 3527
Asp718I	GGTACC	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	2843
AspLEI	GCGC	1 cut(s)	2869
AspS9I	GGNCC	3 cut(s)	219, 3719, 4370
AsuC2I	CCSGG	3 cut(s)	296, 1776, 2111
AsuHPI	GGTGA	9 cut(s)	977, 1118, 1340, 1352, 1557, 3274, 3339, 3365, 4154
AsuII	TTCGAA	1 cut(s)	949
AvaI	CYCGRG	2 cut(s)	75, 3252
AvaII	GGWCC	3 cut(s)	219, 3719, 4370
AvrII	CCTAGG	1 cut(s)	2843
BaeGI	GKGCMC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	1368, 1401
BalI	TGGCCA	2 cut(s)	1092, 4215
BanI	GGYRCC	3 cut(s)	182, 752, 1502
BarI	GAAGNNNNNNTAC	2 cut(s)	3385, 3417
BauI	CACGAG	2 cut(s)	774, 2431
BbrPI	CACGTG	1 cut(s)	2309
BbsI	GAAGAC	4 cut(s)	2845, 3222, 3425, 3852
Bbv12I	GWGCWC	1 cut(s)	239
BceAI	ACGGC	3 cut(s)	1626, 4164, 4350
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	7 cut(s)	125, 551, 2472, 3351, 3717, 3767, 4052
BciVI	GTATCC	2 cut(s)	1369, 1873
BclI	TGATCA	2 cut(s)	937, 2296
BcnI	CCSGG	3 cut(s)	296, 1776, 2111
BcoDI	GTCTC	5 cut(s)	1725, 1763, 2000, 4074, 4348
BcuI	ACTAGT	3 cut(s)	28, 736, 2242
BfmI	CTRYAG	4 cut(s)	352, 1287, 2601, 3136
BfoI	RGCGCY	1 cut(s)	2870
BfrI	CTTAAG	1 cut(s)	4030
BfuAI	ACCTGC	1 cut(s)	1648
BfuI	GTATCC	2 cut(s)	1369, 1873
BglII	AGATCT	1 cut(s)	1026
BlnI	CCTAGG	1 cut(s)	2843
BlpI	GCTNAGC	2 cut(s)	2799, 3890
Bme18I	GGWCC	3 cut(s)	219, 3719, 4370
BmeT110I	CYCGRG	2 cut(s)	75, 3252
BmgT120I	GGNCC	3 cut(s)	219, 3719, 4370
BmiI	GGNNCC	6 cut(s)	184, 220, 754, 1441, 1504, 2555
BmrI	ACTGGG	2 cut(s)	60, 2403
BmuI	ACTGGG	2 cut(s)	60, 2403
BoxI	GACNNNNGTC	1 cut(s)	3429
BpiI	GAAGAC	4 cut(s)	2845, 3222, 3425, 3852
BplI	GAGNNNNNCTC	4 cut(s)	1837, 1869, 2138, 2170
BpmI	CTGGAG	5 cut(s)	1184, 3057, 3323, 3749, 3768
Bpu10I	CCTNAGC	2 cut(s)	1806, 3741
Bpu1102I	GCTNAGC	2 cut(s)	2799, 3890
Bpu14I	TTCGAA	1 cut(s)	949
BpuEI	CTTGAG	3 cut(s)	919, 1864, 3385
BpuMI	CCSGG	3 cut(s)	296, 1776, 2111
BsaAI	YACGTR	1 cut(s)	2309
BsaBI	GATNNNNATC	1 cut(s)	576
BsaWI	WCCGGW	3 cut(s)	262, 2404, 3436
BsaXI	ACNNNNNCTCC	2 cut(s)	1194, 1224
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 1325, 1605, 1670, 2849, 3396, 3809, 4171
Bse118I	RCCGGY	1 cut(s)	3620
Bse3DI	GCAATG	3 cut(s)	1693, 1768, 3651
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	7 cut(s)	125, 551, 2472, 3351, 3717, 3767, 4052
BseGI	GGATG	6 cut(s)	247, 890, 2119, 2363, 3469, 4270
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	8 cut(s)	143, 1325, 1605, 1670, 2849, 3396, 3809, 4171
BseMI	GCAATG	3 cut(s)	1693, 1768, 3651
BseMII	CTCAG	8 cut(s)	974, 1023, 1471, 1820, 1872, 2817, 3881, 4343
BseRI	GAGGAG	4 cut(s)	1952, 2736, 2929, 4317
BseSI	GKGCMC	1 cut(s)	239
BseYI	CCCAGC	2 cut(s)	766, 3842
BsgI	GTGCAG	2 cut(s)	2052, 3478
Bsh1236I	CGCG	1 cut(s)	1874
Bsh1285I	CGRYCG	1 cut(s)	2409
BshFI	GGCC	4 cut(s)	1092, 1225, 2658, 4215
BshNI	GGYRCC	3 cut(s)	182, 752, 1502
BsiEI	CGRYCG	1 cut(s)	2409
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	2 cut(s)	75, 3252
BsiSI	CCGG	8 cut(s)	263, 296, 894, 1776, 2110, 2405, 3437, 3621
BslFI	GGGAC	6 cut(s)	159, 491, 1533, 2488, 2907, 4282
BslI	CCNNNNNNNGG	8 cut(s)	143, 1325, 1605, 1670, 2849, 3396, 3809, 4171
BsmAI	GTCTC	5 cut(s)	1725, 1763, 2000, 4074, 4348
BsmFI	GGGAC	6 cut(s)	159, 491, 1533, 2488, 2907, 4282
BsmI	GAATGC	3 cut(s)	2236, 2417, 4240
BsnI	GGCC	4 cut(s)	1092, 1225, 2658, 4215
BsoBI	CYCGRG	2 cut(s)	75, 3252
Bsp119I	TTCGAA	1 cut(s)	949
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	3981
Bsp1720I	GCTNAGC	2 cut(s)	2799, 3890
BspACI	CCGC	6 cut(s)	756, 1003, 2462, 2655, 3069, 3581
BspANI	GGCC	4 cut(s)	1092, 1225, 2658, 4215
BspCNI	CTCAG	8 cut(s)	975, 1024, 1470, 1819, 1871, 2818, 3882, 4344
BspFNI	CGCG	1 cut(s)	1874
BspHI	TCATGA	2 cut(s)	2925, 3880
BspLI	GGNNCC	6 cut(s)	184, 220, 754, 1441, 1504, 2555
BspMAI	CTGCAG	3 cut(s)	356, 2605, 3140
BspMI	ACCTGC	1 cut(s)	1648
BspQI	GCTCTTC	1 cut(s)	2326
BspT104I	TTCGAA	1 cut(s)	949
BspT107I	GGYRCC	3 cut(s)	182, 752, 1502
BspTI	CTTAAG	1 cut(s)	4030
BsrBI	CCGCTC	1 cut(s)	3071
BsrDI	GCAATG	3 cut(s)	1693, 1768, 3651
BsrFI	RCCGGY	1 cut(s)	3620
BsrGI	TGTACA	1 cut(s)	3981
BssAI	RCCGGY	1 cut(s)	3620
BssSI	CACGAG	2 cut(s)	774, 2431
BssT1I	CCWWGG	6 cut(s)	801, 1087, 2224, 2843, 2972, 3807
Bst2BI	CACGAG	2 cut(s)	774, 2431
Bst2UI	CCWGG	7 cut(s)	125, 551, 2472, 3351, 3717, 3767, 4052
Bst6I	CTCTTC	4 cut(s)	526, 1998, 2326, 4004
BstAFI	CTTAAG	1 cut(s)	4030
BstAPI	GCANNNNNTGC	5 cut(s)	360, 2678, 2708, 3053, 3589
BstAUI	TGTACA	1 cut(s)	3981
BstBAI	YACGTR	1 cut(s)	2309
BstBI	TTCGAA	1 cut(s)	949
BstC8I	GCNNGC	9 cut(s)	43, 808, 1079, 1480, 1676, 2163, 3699, 3703, 4217
BstDSI	CCRYGG	1 cut(s)	4366
BstF5I	GGATG	6 cut(s)	247, 890, 2119, 2363, 3469, 4270
BstFNI	CGCG	1 cut(s)	1874
BstH2I	RGCGCY	1 cut(s)	2870
BstHHI	GCGC	1 cut(s)	2869
BstMAI	GTCTC	5 cut(s)	1725, 1763, 2000, 4074, 4348
BstMCI	CGRYCG	1 cut(s)	2409
BstNI	CCWGG	7 cut(s)	125, 551, 2472, 3351, 3717, 3767, 4052
BstNSI	RCATGY	7 cut(s)	303, 1118, 1633, 1887, 1947, 3674, 3980
BstPAI	GACNNNNGTC	1 cut(s)	3429
BstSFI	CTRYAG	4 cut(s)	352, 1287, 2601, 3136
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	1874
BstV2I	GAAGAC	4 cut(s)	2845, 3222, 3425, 3852
BstX2I	RGATCY	6 cut(s)	335, 493, 1026, 1269, 1582, 3851
BstXI	CCANNNNNNTGG	1 cut(s)	2666
BstYI	RGATCY	6 cut(s)	335, 493, 1026, 1269, 1582, 3851
BsuI	GTATCC	2 cut(s)	1369, 1873
BsuRI	GGCC	4 cut(s)	1092, 1225, 2658, 4215
BtgI	CCRYGG	1 cut(s)	4366
BtsCI	GGATG	6 cut(s)	247, 890, 2119, 2363, 3469, 4270
BtsI	GCAGTG	1 cut(s)	3495
BveI	ACCTGC	1 cut(s)	1648
Cac8I	GCNNGC	9 cut(s)	43, 808, 1079, 1480, 1676, 2163, 3699, 3703, 4217
CaiI	CAGNNNCTG	1 cut(s)	1786
CciI	TCATGA	2 cut(s)	2925, 3880
CfoI	GCGC	1 cut(s)	2869
Cfr10I	RCCGGY	1 cut(s)	3620
Cfr13I	GGNCC	3 cut(s)	219, 3719, 4370
CseI	GACGC	2 cut(s)	1863, 3788
CsiI	ACCWGGT	1 cut(s)	3349
Csp6I	GTAC	8 cut(s)	56, 183, 432, 1947, 3008, 3982, 4256, 4288
CviQI	GTAC	8 cut(s)	56, 183, 432, 1947, 3008, 3982, 4256, 4288
DraI	TTTAAA	1 cut(s)	282
DraIII	CACNNNGTG	1 cut(s)	3353
EaeI	YGGCCR	3 cut(s)	1090, 2656, 4213
Eam1104I	CTCTTC	4 cut(s)	526, 1998, 2326, 4004
EarI	CTCTTC	4 cut(s)	526, 1998, 2326, 4004
Eco130I	CCWWGG	6 cut(s)	801, 1087, 2224, 2843, 2972, 3807
Eco147I	AGGCCT	1 cut(s)	1225
Eco32I	GATATC	1 cut(s)	4318
Eco47I	GGWCC	3 cut(s)	219, 3719, 4370
Eco47III	AGCGCT	1 cut(s)	2868
Eco57I	CTGAAG	6 cut(s)	1731, 2022, 2715, 2780, 3222, 3255
Eco72I	CACGTG	1 cut(s)	2309
Eco88I	CYCGRG	2 cut(s)	75, 3252
EcoRII	CCWGG	7 cut(s)	123, 549, 2470, 3349, 3715, 3765, 4050
EcoRV	GATATC	1 cut(s)	4318
EcoT14I	CCWWGG	6 cut(s)	801, 1087, 2224, 2843, 2972, 3807
EcoT22I	ATGCAT	4 cut(s)	1660, 2290, 2964, 3676
ErhI	CCWWGG	6 cut(s)	801, 1087, 2224, 2843, 2972, 3807
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 4024, 4056
FaqI	GGGAC	6 cut(s)	159, 491, 1533, 2488, 2907, 4282
FauI	CCCGC	1 cut(s)	1010
FauNDI	CATATG	2 cut(s)	2548, 2626
FbaI	TGATCA	2 cut(s)	937, 2296
FblI	GTMKAC	1 cut(s)	2731
FokI	GGATG	6 cut(s)	234, 877, 2126, 2350, 3456, 4277
GlaI	GCGC	1 cut(s)	2868
GsaI	CCCAGC	2 cut(s)	770, 3846
GsuI	CTGGAG	5 cut(s)	1184, 3057, 3323, 3749, 3768
HaeII	RGCGCY	1 cut(s)	2870
HaeIII	GGCC	4 cut(s)	1092, 1225, 2658, 4215
HapII	CCGG	8 cut(s)	263, 296, 894, 1776, 2110, 2405, 3437, 3621
HgaI	GACGC	2 cut(s)	1863, 3788
HhaI	GCGC	1 cut(s)	2869
Hin6I	GCGC	1 cut(s)	2867
HinP1I	GCGC	1 cut(s)	2867
HindIII	AAGCTT	2 cut(s)	2831, 3699
HpaII	CCGG	8 cut(s)	263, 296, 894, 1776, 2110, 2405, 3437, 3621
HphI	GGTGA	9 cut(s)	977, 1118, 1340, 1352, 1557, 3274, 3339, 3365, 4154
Hpy166II	GTNNAC	7 cut(s)	237, 1282, 2732, 3347, 3356, 3821, 3982
Hpy8I	GTNNAC	7 cut(s)	237, 1282, 2732, 3347, 3356, 3821, 3982
Hpy99I	CGWCG	2 cut(s)	1879, 3485
HpyAV	CCTTC	9 cut(s)	1283, 1358, 1457, 1596, 1674, 1706, 2096, 3012, 3387
HpyCH4IV	ACGT	2 cut(s)	2308, 3480
HpySE526I	ACGT	2 cut(s)	2308, 3480
HspAI	GCGC	1 cut(s)	2867
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	2 cut(s)	937, 2296
LguI	GCTCTTC	1 cut(s)	2326
LmnI	GCTCC	5 cut(s)	2864, 3076, 3946, 3976, 4330
MabI	ACCWGGT	1 cut(s)	3349
MaeII	ACGT	2 cut(s)	2308, 3480
MbiI	CCGCTC	1 cut(s)	3071
MfeI	CAATTG	1 cut(s)	3662
MflI	RGATCY	6 cut(s)	335, 493, 1026, 1269, 1582, 3851
MhlI	GDGCHC	1 cut(s)	239
MlsI	TGGCCA	2 cut(s)	1092, 4215
MluNI	TGGCCA	2 cut(s)	1092, 4215
MlyI	GAGTC	7 cut(s)	1392, 2360, 2443, 2470, 2889, 3264, 3554
MmeI	TCCRAC	8 cut(s)	182, 433, 629, 1467, 1857, 2308, 3522, 3933
Mox20I	TGGCCA	2 cut(s)	1092, 4215
Mph1103I	ATGCAT	4 cut(s)	1660, 2290, 2964, 3676
MroXI	GAANNNNTTC	3 cut(s)	1748, 3343, 3527
MscI	TGGCCA	2 cut(s)	1092, 4215
MslI	CAYNNNNRTG	8 cut(s)	63, 1356, 1508, 2930, 3787, 4098, 4233, 4263
Msp20I	TGGCCA	2 cut(s)	1092, 4215
MspA1I	CMGCKG	2 cut(s)	119, 2560
MspCI	CTTAAG	1 cut(s)	4030
MspI	CCGG	8 cut(s)	263, 296, 894, 1776, 2110, 2405, 3437, 3621
MunI	CAATTG	1 cut(s)	3662
Mva1269I	GAATGC	3 cut(s)	2236, 2417, 4240
MvaI	CCWGG	7 cut(s)	125, 551, 2472, 3351, 3717, 3767, 4052
MvnI	CGCG	1 cut(s)	1874
NciI	CCSGG	3 cut(s)	296, 1776, 2111
NdeI	CATATG	2 cut(s)	2548, 2626
NlaIV	GGNNCC	6 cut(s)	184, 220, 754, 1441, 1504, 2555
NmuCI	GTSAC	8 cut(s)	640, 661, 1106, 2080, 2428, 3169, 3459, 3679
NsiI	ATGCAT	4 cut(s)	1660, 2290, 2964, 3676
NspI	RCATGY	7 cut(s)	303, 1118, 1633, 1887, 1947, 3674, 3980
NspV	TTCGAA	1 cut(s)	949
PaeR7I	CTCGAG	1 cut(s)	3252
PagI	TCATGA	2 cut(s)	2925, 3880
PceI	AGGCCT	1 cut(s)	1225
PciI	ACATGT	3 cut(s)	1114, 1883, 3976
PciSI	GCTCTTC	1 cut(s)	2326
PcsI	WCGNNNNNNNCGW	1 cut(s)	4268
PctI	GAATGC	3 cut(s)	2236, 2417, 4240
PdmI	GAANNNNTTC	3 cut(s)	1748, 3343, 3527
PfoI	TCCNGGA	2 cut(s)	2109, 4050
PleI	GAGTC	7 cut(s)	1391, 2359, 2442, 2470, 2889, 3263, 3553
PmaCI	CACGTG	1 cut(s)	2309
PmlI	CACGTG	1 cut(s)	2309
PpsI	GAGTC	7 cut(s)	1391, 2359, 2442, 2470, 2889, 3263, 3553
Ppu21I	YACGTR	1 cut(s)	2309
PscI	ACATGT	3 cut(s)	1114, 1883, 3976
PshAI	GACNNNNGTC	1 cut(s)	3429
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	7 cut(s)	123, 549, 2470, 3349, 3715, 3765, 4050
PspCI	CACGTG	1 cut(s)	2309
PspFI	CCCAGC	2 cut(s)	766, 3842
PspGI	CCWGG	7 cut(s)	123, 549, 2470, 3349, 3715, 3765, 4050
PspN4I	GGNNCC	6 cut(s)	184, 220, 754, 1441, 1504, 2555
PspPI	GGNCC	3 cut(s)	219, 3719, 4370
PspXI	VCTCGAGB	1 cut(s)	3252
PstI	CTGCAG	3 cut(s)	356, 2605, 3140
PstNI	CAGNNNCTG	1 cut(s)	1786
PsuI	RGATCY	6 cut(s)	335, 493, 1026, 1269, 1582, 3851
PvuII	CAGCTG	2 cut(s)	119, 2560
RsaI	GTAC	8 cut(s)	57, 184, 433, 1948, 3009, 3983, 4257, 4289
RsaNI	GTAC	8 cut(s)	56, 183, 432, 1947, 3008, 3982, 4256, 4288
RseI	CAYNNNNRTG	8 cut(s)	63, 1356, 1508, 2930, 3787, 4098, 4233, 4263
SapI	GCTCTTC	1 cut(s)	2326
Sau96I	GGNCC	3 cut(s)	219, 3719, 4370
SchI	GAGTC	7 cut(s)	1392, 2360, 2443, 2470, 2889, 3264, 3554
SduI	GDGCHC	1 cut(s)	239
SexAI	ACCWGGT	1 cut(s)	3349
SfcI	CTRYAG	4 cut(s)	352, 1287, 2601, 3136
Sfr274I	CTCGAG	1 cut(s)	3252
SfuI	TTCGAA	1 cut(s)	949
SgrAI	CRCCGGYG	1 cut(s)	3620
SinI	GGWCC	3 cut(s)	219, 3719, 4370
SlaI	CTCGAG	1 cut(s)	3252
SmiMI	CAYNNNNRTG	8 cut(s)	63, 1356, 1508, 2930, 3787, 4098, 4233, 4263
SmlI	CTYRAG	5 cut(s)	898, 1843, 3252, 3364, 4030
SmoI	CTYRAG	5 cut(s)	898, 1843, 3252, 3364, 4030
SpeI	ACTAGT	3 cut(s)	28, 736, 2242
SseBI	AGGCCT	1 cut(s)	1225
SsiI	CCGC	6 cut(s)	756, 1003, 2462, 2655, 3069, 3581
StuI	AGGCCT	1 cut(s)	1225
StyI	CCWWGG	6 cut(s)	801, 1087, 2224, 2843, 2972, 3807
TaiI	ACGT	2 cut(s)	2311, 3483
TatI	WGTACW	4 cut(s)	431, 1946, 3981, 4255
TauI	GCSGC	1 cut(s)	2658
TseFI	GTSAC	8 cut(s)	640, 661, 1106, 2080, 2428, 3169, 3459, 3679
Tsp45I	GTSAC	8 cut(s)	640, 661, 1106, 2080, 2428, 3169, 3459, 3679
TspGWI	ACGGA	8 cut(s)	101, 222, 358, 870, 1588, 2544, 3792, 4277
Vha464I	CTTAAG	1 cut(s)	4030
VneI	GTGCAC	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	219, 3719, 4370
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	6 cut(s)	795, 1645, 1982, 2122, 3100, 4157
XbaI	TCTAGA	2 cut(s)	410, 2887
XceI	RCATGY	7 cut(s)	303, 1118, 1633, 1887, 1947, 3674, 3980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1085
XhoI	CTCGAG	1 cut(s)	3252
XmaJI	CCTAGG	1 cut(s)	2843
XmiI	GTMKAC	1 cut(s)	2731
XmnI	GAANNNNTTC	3 cut(s)	1748, 3343, 3527
Zsp2I	ATGCAT	4 cut(s)	1660, 2290, 2964, 3676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.