RchiOBHm_Chr6g0259971

Diphthamide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002470
Physical Location & Seq
Reverse (-)
15137460 .. 15138951
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGCATCCAAGAAACCATTCGTTATCGATCAGGCAGATGAAATCACTGAGAAAGCCGCATTCACCTGGCAGACTAACATGAGTGGAACGACGAGCTCCAGGCATACACATACCCATAACCCATGCCCATGTGGAGACTTGTTCCAGATTACCAAGGAAGACCTGAAATTGGGGGAAGAGATTGCTCGGTGTCCTAGTTGTACACTCTACATCACCGTCGTTTACAACATCGAAGATTTCATGGATAAGAAACCCACCAAACCCTTTGAGCCCTCCAAGCAACAATCCCTCACCGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CSL

Protein Analysis

100

Amino Acids

11.27

Weight (kDa)

5.86

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_CSL PF05207 39 - 76 5.5e-15 CSL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 2 cut(s) 65, 98
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 55, 205, 283
BanII GRGCYC 2 cut(s) 98, 273
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 67, 100
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 67, 100
BmrFI CCNGG 2 cut(s) 67, 100
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 67, 100
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 98, 273
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 67, 100
Bst4CI ACNGT 2 cut(s) 217, 295
Bst6I CTCTTC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 48, 300
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 2 cut(s) 67, 100
BstSCI CCNGG 2 cut(s) 65, 98
BstV2I GAAGAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 79, 123, 129, 241
CviJI RGCY 3 cut(s) 56, 96, 271
CviKI_1 RGCY 3 cut(s) 56, 96, 271
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 48, 300
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 98, 273
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 65, 98
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 98, 273
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 82, 126, 132, 244
FaiI YATR 7 cut(s) 80, 105, 111, 117, 124, 130, 242
FatI CATG 4 cut(s) 78, 122, 128, 240
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 2 cut(s) 98, 273
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 82
Hin1II CATG 4 cut(s) 82, 126, 132, 244
HphI GGTGA 3 cut(s) 55, 205, 283
Hpy166II GTNNAC 2 cut(s) 203, 223
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 203, 223
Hpy99I CGWCG 3 cut(s) 94, 221, 299
HpyCH4III ACNGT 2 cut(s) 217, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 48, 300
Hsp92II CATG 4 cut(s) 82, 126, 132, 244
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 7 cut(s) 17, 52, 79, 85, 112, 158, 176
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 195
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 170, 188, 245
MhlI GDGCHC 2 cut(s) 98, 273
MluCI AATT 1 cut(s) 167
MnlI CCTC 2 cut(s) 283, 299
MroXI GAANNNNTTC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 67, 100
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 2 cut(s) 67, 100
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 28
NlaIII CATG 4 cut(s) 82, 126, 132, 244
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 65, 98
PspGI CCWGG 2 cut(s) 65, 98
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 67, 100
SduI GDGCHC 2 cut(s) 98, 273
SetI ASST 3 cut(s) 68, 98, 165
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 1 cut(s) 167
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 65, 98
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 217, 295
TaqI TCGA 2 cut(s) 27, 231
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 59
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 54, 229
TspRI CASTG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.