RchiOBHm_Chr6g0265941

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008837
Physical Location & Seq
Reverse (-)
21958401 .. 21959576
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGACCCATACAGCTGAGATTCCTACGAAATGTTCCTATAGCGAGACGTTAGTCTCCACGTCATTTCAGGAACATTGCAAGGAAAACGCAGACTTGCAATCGTGGGACACAGAACTCAAAGAACATGCAGAAGAGATCTTCAAAACCGTCAAGAGTGAAGGAGCTCTCTCGATTGATTCCTGGAAACCAATCATAAACTACTGGTGGTGTTCAAACAAGAAGATTGTGGAAGAAATCTTGGCATTCAAGAAAGATATAACTGAAGGGGAGGGGAGTAGTAGGAAGAAGAAGAAAAATGAAGAAAGAGTGAACTTCCTGGCTGACGAGTATATTAAGAATAGCTCAAACATGCTGGATTTCCTTTCTGAAATAGAAAACTTCCTCCTGCTTGCTCGTAATAGCCATTCATATACTGCAAAAGTGATTCAACAGTACTTTGAGATACCCAATGGCATGAGTGGAGCTGAGTTCTACGGGAAGATTGTGGATAACTTTAAAAAGCTCAGGGGCTCTGATAATATCTTTGACCATTCTGCTAAAAACTTGCTCAAAAAGGCAGAAAGTTTGAAGAGTCAGCATGAAGAAATGCTTCGTAATTGGCAAGCCGAAATCTCTAAACTTAGTAAGAAGGAGAAACGCGCGAAATTATGGAAGAACGTCGTGAATATGATATTTGTAGGCGCTGTGGTTGGTTTGGTTATTGCCCAAATTGTGACTGCAGTTATAGCTGCTCCAGCTGTTGCAGAAGCTATTAGTTCTGCCATTGTCCCCATAGCAATGGCTGGACACTGGACTGTCTCTTTGTTTGAAGAGTCTGAAAGAGCATTTAAGAATCTGCAGGAATTAAATGAGGAGAGGTGTAAGGAAACTAGAATTGCCATTAAAGAGTTGGGCGACATTAAGTTTTCGATTAATGGTGTTATTAACCAGATTAATTCAGTCATGTACAATCCAGGCTCTGAAATGGATCGGGAACAATTAGATTTCACAATGAAGGAAATCAAGAGCAAGCTGGGAGCGTTTCTGAATAAGGTTGAGGATTTGGAGAAGGACGTAGAAAAGACCATAAAGTATATAAGGAAGGCAAGGGATGATGTTCATATCATGAACACCCAGGTCACGCAGGTCAAAAAAGGAGCATTTTGCTTTGAAAGCTTAGCTCGATCTGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

391

Amino Acids

44.61

Weight (kDa)

6.5

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 32 - 365 9e-37 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1114
AccII CGCG 2 cut(s) 639, 641
AclWI GGATC 1 cut(s) 975
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 2 cut(s) 434, 947
AgsI TTSAA 7 cut(s) 142, 213, 247, 428, 568, 809, 1151
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 4 cut(s) 179, 315, 952, 1113
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 3 cut(s) 38, 58, 802
AlwI GGATC 1 cut(s) 975
AlwNI CAGNNNCTG 1 cut(s) 959
ApeKI GCWGC 1 cut(s) 728
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
AseI ATTAAT 2 cut(s) 912, 933
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 641, 683
BanII GRGCYC 2 cut(s) 166, 512
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 715
BciT130I CCWGG 4 cut(s) 181, 317, 954, 1115
BcoDI GTCTC 3 cut(s) 38, 58, 802
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 3 cut(s) 37, 717, 836
BfoI RGCGCY 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 1114
BglII AGATCT 1 cut(s) 135
BisI GCNGC 1 cut(s) 729
BlpI GCTNAGC 1 cut(s) 1156
BlsI GCNGC 1 cut(s) 730
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 4 cut(s) 181, 317, 954, 1115
BmgBI CACGTC 1 cut(s) 60
BmrFI CCNGG 4 cut(s) 181, 317, 954, 1115
BoxI GACNNNNGTC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 1156
BsaJI CCNNGG 1 cut(s) 1113
Bse1I ACTGG 2 cut(s) 206, 794
Bse3DI GCAATG 2 cut(s) 73, 783
BseBI CCWGG 4 cut(s) 181, 317, 954, 1115
BseDI CCNNGG 1 cut(s) 1113
BseGI GGATG 1 cut(s) 1096
BseMI GCAATG 2 cut(s) 73, 783
BseMII CTCAG 3 cut(s) 6, 456, 517
BseNI ACTGG 2 cut(s) 206, 794
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 1 cut(s) 715
BseYI CCCAGC 1 cut(s) 1012
Bsh1236I CGCG 2 cut(s) 639, 641
BsiHKAI GWGCWC 1 cut(s) 166
BslFI GGGAC 2 cut(s) 119, 752
BsmAI GTCTC 3 cut(s) 38, 58, 802
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 119, 752
BsmI GAATGC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 166, 512
Bsp1407I TGTACA 1 cut(s) 945
Bsp143I GATC 3 cut(s) 135, 967, 1163
Bsp1720I GCTNAGC 1 cut(s) 1156
BspCNI CTCAG 3 cut(s) 7, 457, 516
BspFNI CGCG 2 cut(s) 639, 641
BspHI TCATGA 1 cut(s) 1104
BspMAI CTGCAG 2 cut(s) 721, 840
BspMI ACCTGC 1 cut(s) 1114
BspPI GGATC 1 cut(s) 975
BsrDI GCAATG 2 cut(s) 73, 783
BsrGI TGTACA 1 cut(s) 945
BsrI ACTGG 2 cut(s) 206, 794
BssECI CCNNGG 1 cut(s) 1113
BssMI GATC 3 cut(s) 135, 967, 1163
Bst2UI CCWGG 4 cut(s) 181, 317, 954, 1115
Bst4CI ACNGT 3 cut(s) 148, 432, 796
Bst6I CTCTTC 3 cut(s) 126, 563, 804
BstAUI TGTACA 1 cut(s) 945
BstC8I GCNNGC 3 cut(s) 390, 603, 1010
BstDEI CTNAG 5 cut(s) 15, 465, 503, 620, 1156
BstF5I GGATG 1 cut(s) 1096
BstFNI CGCG 2 cut(s) 639, 641
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 2 cut(s) 641, 683
BstKTI GATC 3 cut(s) 138, 970, 1166
BstMAI GTCTC 3 cut(s) 38, 58, 802
BstMBI GATC 3 cut(s) 135, 967, 1163
BstMWI GCNNNNNNNGC 3 cut(s) 725, 734, 1152
BstNI CCWGG 4 cut(s) 181, 317, 954, 1115
BstNSI RCATGY 2 cut(s) 128, 352
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 4 cut(s) 179, 315, 952, 1113
BstSFI CTRYAG 3 cut(s) 37, 717, 836
BstUI CGCG 2 cut(s) 639, 641
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 778
BstYI RGATCY 1 cut(s) 135
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 1096
BtsIMutI CAGTG 1 cut(s) 787
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 3 cut(s) 390, 603, 1010
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 2 cut(s) 641, 683
Csp6I GTAC 2 cut(s) 433, 946
CviAII CATG 6 cut(s) 125, 349, 454, 578, 943, 1105
CviQI GTAC 2 cut(s) 433, 946
DdeI CTNAG 5 cut(s) 15, 465, 503, 620, 1156
DpnI GATC 3 cut(s) 137, 969, 1165
DpnII GATC 3 cut(s) 135, 967, 1163
DraI TTTAAA 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 126, 563, 804
EarI CTCTTC 3 cut(s) 126, 563, 804
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 166, 512
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 164
EcoRII CCWGG 4 cut(s) 179, 315, 952, 1113
EcoT38I GRGCYC 2 cut(s) 166, 512
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 6 cut(s) 128, 352, 457, 581, 946, 1108
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 2 cut(s) 119, 752
FatI CATG 6 cut(s) 124, 348, 453, 577, 942, 1104
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 1 cut(s) 1103
FriOI GRGCYC 2 cut(s) 166, 512
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 1 cut(s) 870
GlaI GCGC 2 cut(s) 640, 682
GluI GCNGC 1 cut(s) 729
GsaI CCCAGC 1 cut(s) 1016
GsuI CTGGAG 1 cut(s) 717
HaeII RGCGCY 1 cut(s) 684
HhaI GCGC 2 cut(s) 641, 683
Hin1II CATG 6 cut(s) 128, 352, 457, 581, 946, 1108
Hin6I GCGC 2 cut(s) 639, 681
HinP1I GCGC 2 cut(s) 639, 681
HindIII AAGCTT 1 cut(s) 1153
HinfI GANTC 6 cut(s) 19, 176, 424, 571, 812, 832
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 367, 514, 817, 961, 1026, 1168
Hpy188III TCNNGA 8 cut(s) 68, 151, 169, 247, 661, 971, 1003, 1105
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 6 cut(s) 152, 257, 622, 988, 1042, 1075
HpyCH4III ACNGT 3 cut(s) 148, 432, 796
HpyCH4IV ACGT 4 cut(s) 47, 59, 657, 1053
HpyCH4V TGCA 7 cut(s) 78, 97, 128, 416, 719, 743, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 725, 734, 1152
HpyF3I CTNAG 5 cut(s) 15, 465, 503, 620, 1156
HpySE526I ACGT 4 cut(s) 47, 59, 657, 1053
Hsp92II CATG 6 cut(s) 128, 352, 457, 581, 946, 1108
HspAI GCGC 2 cut(s) 639, 681
Kzo9I GATC 3 cut(s) 135, 967, 1163
LmnI GCTCC 5 cut(s) 161, 461, 736, 1016, 1136
Lsp1109I GCAGC 1 cut(s) 715
MaeI CTAG 1 cut(s) 870
MaeII ACGT 4 cut(s) 47, 59, 657, 1053
MaeIII GTNAC 2 cut(s) 712, 1117
MalI GATC 3 cut(s) 137, 969, 1165
MboI GATC 3 cut(s) 135, 967, 1163
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 166, 512
MluCI AATT 7 cut(s) 595, 644, 708, 842, 873, 934, 977
MlyI GAGTC 2 cut(s) 580, 821
MnlI CCTC 5 cut(s) 262, 392, 844, 849, 1030
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 9 cut(s) 333, 495, 828, 845, 882, 900, 912, 924, 933
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 2 cut(s) 14, 737
MspR9I CCNGG 4 cut(s) 181, 317, 954, 1115
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 4 cut(s) 181, 317, 954, 1115
MvnI CGCG 2 cut(s) 639, 641
MwoI GCNNNNNNNGC 3 cut(s) 725, 734, 1152
NdeII GATC 3 cut(s) 135, 967, 1163
NlaIII CATG 6 cut(s) 128, 352, 457, 581, 946, 1108
NmuCI GTSAC 2 cut(s) 712, 1117
NspI RCATGY 2 cut(s) 128, 352
PagI TCATGA 1 cut(s) 1104
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 19, 176, 424, 832
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 2 cut(s) 579, 820
PpsI GAGTC 2 cut(s) 579, 820
PshAI GACNNNNGTC 1 cut(s) 50
PshBI ATTAAT 2 cut(s) 912, 933
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 4 cut(s) 179, 315, 952, 1113
PspFI CCCAGC 1 cut(s) 1012
PspGI CCWGG 4 cut(s) 179, 315, 952, 1113
PstI CTGCAG 2 cut(s) 721, 840
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 2 cut(s) 14, 737
RsaI GTAC 2 cut(s) 434, 947
RsaNI GTAC 2 cut(s) 433, 946
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 9 cut(s) 333, 495, 828, 845, 882, 900, 912, 924, 933
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 135, 967, 1163
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 2 cut(s) 580, 821
ScrFI CCNGG 4 cut(s) 181, 317, 954, 1115
SduI GDGCHC 2 cut(s) 166, 512
SfcI CTRYAG 3 cut(s) 37, 717, 836
SmiMI CAYNNNNRTG 1 cut(s) 776
Sse9I AATT 7 cut(s) 595, 644, 708, 842, 873, 934, 977
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 179, 315, 952, 1113
TaaI ACNGT 3 cut(s) 148, 432, 796
TaiI ACGT 4 cut(s) 50, 62, 660, 1056
TaqI TCGA 3 cut(s) 170, 908, 1162
TasI AATT 7 cut(s) 595, 644, 708, 842, 873, 934, 977
TatI WGTACW 2 cut(s) 432, 945
TfiI GAWTC 4 cut(s) 19, 176, 424, 832
Tru1I TTAA 9 cut(s) 333, 495, 828, 845, 882, 900, 912, 924, 933
Tru9I TTAA 9 cut(s) 333, 495, 828, 845, 882, 900, 912, 924, 933
TscAI CASTG 1 cut(s) 794
TseFI GTSAC 2 cut(s) 712, 1117
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 712, 1117
TspDTI ATGAA 6 cut(s) 312, 396, 594, 1007, 1088, 1121
TspRI CASTG 1 cut(s) 794
VspI ATTAAT 2 cut(s) 912, 933
XceI RCATGY 2 cut(s) 128, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 870
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.