Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006952.1

Orthogroup ID

OG0008837

Physical Location & Seq

Genomic Coordinates Forward (+)

19195 .. 20378

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006952.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgaagacccttacctgctttacagctgagattcctacgaaatattcctatagcgagttagtctccacagctgaatggaagtcatttcaggaacattgcaaggaaaacgcagacttgcaatcgtgggacacagaactcaaagaacatgcagaagagatcttgaaaaccgtcaagagtgaaggaggtctctcgattgattcctggaaaccaatcacagactactggtggtgttcaaacaagaagattgtggaagcaatcttggcattcaagaaaggtataactgaaggggaggggagtagtaggaagaagaagaaaaatgaagaaagagggaacatcctgactgacgagtatattaagaatagctcaaacatgctggatttactttctgaaatggaaaacttcctcctgcttgctcgtaatagccattcatatattgcaaaaatgattcaacagtactttgagatacccaatggcatgagtggagctgagttctacgggaagattgaggatgacttaaaaaagctcaggggctctgataatatctttgaccattctgctgaaaacttgctcaaaaaggcagaaagtttgaagagtcagcatgaagaaatgcttcgtaatttaagctattacttctgccattggccccattaccccatagcaatggctggacactggactgtctctttgtttgaagagtctgaaagagcatttaagaatcagcgggaattaaatgaggagatgcgtaaggaaactagaattgccattaaagagttgggcgacattaagtcttcgattgatggtgttattaaccagattaattcagtcatgtacaatccaggctctgaaatggatcgggaacaattagatttcacaatgaaggaaatcaagagcaagctgggagcgtttctgaataaggttgatgatttggagaaggacgtagaaaagaccataaagtatataaggaaggcaagggatgatgttcatatatatcatgaacacccaggtcacgcaggtcaaaaaaggagcattttgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

345

Amino Acids

40.1

Weight (kDa)

5.91

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06181
rosa_chinensis	RchiOBHm_Chr6g0265941
rosa_laevigata	RLG00000014144
rosa_multiflora	Rmu_sc0000596.1_g000062 Rmu_sc0006493.1_g000014 Rmu_sc0006952.1_g000005 Rmu_sc0019932.1_g000003 Rmu_sc0019932.1_g000004
rosa_roxburghii	Rroxscaffold_177G00434100 Rroxscaffold_7G00204890 Rroxscaffold_7G00204950
rosa_rugosa	Rorug06G0001600
rosa_samantha	Rh6AG120900 Rh6AG143000 Rh6BG114400 Rh6BG143200 Rh6CG112700 Rh6CG139700 Rh6CG139800 Rh6DG102200 Rh6DG127500
rosa_wichuraiana	Rw6G010380 Rw6G012370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	23, 1001
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	1 cut(s)	858
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	455, 830
AgsI	TTSAA	6 cut(s)	163, 234, 268, 449, 589, 692
AhdI	GACNNNNNGTC	1 cut(s)	784
AjnI	CCWGG	3 cut(s)	200, 835, 1000
AluBI	AGCT	7 cut(s)	26, 71, 363, 485, 523, 624, 895
AluI	AGCT	7 cut(s)	26, 71, 363, 485, 523, 624, 895
Alw26I	GTCTC	3 cut(s)	67, 191, 685
AlwI	GGATC	1 cut(s)	858
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	11, 780
BccI	CCATC	1 cut(s)	791
BciT130I	CCWGG	3 cut(s)	202, 837, 1002
BcoDI	GTCTC	3 cut(s)	67, 191, 685
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	49
BfuAI	ACCTGC	2 cut(s)	23, 1001
BglII	AGATCT	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	202, 837, 1002
BmeRI	GACNNNNNGTC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	3 cut(s)	202, 837, 1002
BmsI	GCATC	1 cut(s)	729
BpiI	GAAGAC	2 cut(s)	11, 780
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu10I	CCTNAGC	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	1000
Bse1I	ACTGG	2 cut(s)	227, 677
Bse3DI	GCAATG	2 cut(s)	94, 666
BseBI	CCWGG	3 cut(s)	202, 837, 1002
BseDI	CCNNGG	1 cut(s)	1000
BseGI	GGATG	3 cut(s)	333, 514, 979
BseMI	GCAATG	2 cut(s)	94, 666
BseMII	CTCAG	3 cut(s)	18, 477, 538
BseNI	ACTGG	2 cut(s)	227, 677
BseRI	GAGGAG	1 cut(s)	749
BseYI	CCCAGC	1 cut(s)	895
BshFI	GGCC	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	140
BsmAI	GTCTC	3 cut(s)	67, 191, 685
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	643
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	2 cut(s)	156, 850
BspACI	CCGC	1 cut(s)	721
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	3 cut(s)	19, 478, 537
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	1 cut(s)	644
BspMI	ACCTGC	2 cut(s)	23, 1001
BspPI	GGATC	1 cut(s)	858
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	94, 666
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	227, 677
BssECI	CCNNGG	1 cut(s)	1000
BssMI	GATC	2 cut(s)	156, 850
Bst2UI	CCWGG	3 cut(s)	202, 837, 1002
Bst4CI	ACNGT	3 cut(s)	169, 453, 679
Bst6I	CTCTTC	3 cut(s)	147, 584, 687
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	411, 893
BstDEI	CTNAG	3 cut(s)	27, 486, 524
BstF5I	GGATG	3 cut(s)	333, 514, 979
BstKTI	GATC	2 cut(s)	159, 853
BstMAI	GTCTC	3 cut(s)	67, 191, 685
BstMBI	GATC	2 cut(s)	156, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	3 cut(s)	202, 837, 1002
BstNSI	RCATGY	2 cut(s)	149, 373
BstSCI	CCNGG	3 cut(s)	200, 835, 1000
BstSFI	CTRYAG	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	11, 780
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	643
BtsCI	GGATG	3 cut(s)	333, 514, 979
BtsIMutI	CAGTG	1 cut(s)	670
BveI	ACCTGC	2 cut(s)	23, 1001
Cac8I	GCNNGC	2 cut(s)	411, 893
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	991
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	454, 829
CviAII	CATG	6 cut(s)	146, 370, 475, 599, 826, 992
CviQI	GTAC	2 cut(s)	454, 829
DdeI	CTNAG	3 cut(s)	27, 486, 524
DpnI	GATC	2 cut(s)	158, 852
DpnII	GATC	2 cut(s)	156, 850
DriI	GACNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	147, 584, 687
Eam1105I	GACNNNNNGTC	1 cut(s)	784
EarI	CTCTTC	3 cut(s)	147, 584, 687
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	200, 835, 1000
EcoT38I	GRGCYC	1 cut(s)	533
FaeI	CATG	6 cut(s)	149, 373, 478, 602, 829, 995
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	145, 369, 474, 598, 825, 991
FauI	CCCGC	1 cut(s)	714
FokI	GGATG	3 cut(s)	320, 521, 986
FriOI	GRGCYC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	753
GsaI	CCCAGC	1 cut(s)	899
HaeIII	GGCC	1 cut(s)	643
Hin1II	CATG	6 cut(s)	149, 373, 478, 602, 829, 995
HinfI	GANTC	6 cut(s)	31, 197, 445, 592, 695, 715
Hpy188I	TCNGA	5 cut(s)	388, 535, 700, 844, 909
Hpy188III	TCNNGA	9 cut(s)	89, 160, 172, 190, 268, 337, 854, 886, 992
HpyAV	CCTTC	5 cut(s)	173, 278, 871, 925, 958
HpyCH4III	ACNGT	3 cut(s)	169, 453, 679
HpyCH4IV	ACGT	1 cut(s)	936
HpyCH4V	TGCA	4 cut(s)	99, 118, 149, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	27, 486, 524
HpySE526I	ACGT	1 cut(s)	936
Hsp92II	CATG	6 cut(s)	149, 373, 478, 602, 829, 995
Kzo9I	GATC	2 cut(s)	156, 850
LmnI	GCTCC	3 cut(s)	482, 899, 1023
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	936
MaeIII	GTNAC	1 cut(s)	1004
MalI	GATC	2 cut(s)	158, 852
MboI	GATC	2 cut(s)	156, 850
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	5 cut(s)	616, 725, 756, 817, 860
MlyI	GAGTC	2 cut(s)	601, 704
MnlI	CCTC	6 cut(s)	176, 283, 320, 413, 499, 727
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	9 cut(s)	354, 515, 620, 711, 728, 765, 783, 807, 816
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	3 cut(s)	26, 71, 721
MspR9I	CCNGG	3 cut(s)	202, 837, 1002
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	3 cut(s)	202, 837, 1002
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	156, 850
NlaIII	CATG	6 cut(s)	149, 373, 478, 602, 829, 995
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	2 cut(s)	149, 373
PagI	TCATGA	1 cut(s)	991
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	4 cut(s)	31, 197, 445, 715
PfoI	TCCNGGA	1 cut(s)	200
PleI	GAGTC	2 cut(s)	600, 703
PpsI	GAGTC	2 cut(s)	600, 703
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	3 cut(s)	200, 835, 1000
PspFI	CCCAGC	1 cut(s)	895
PspGI	CCWGG	3 cut(s)	200, 835, 1000
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	842
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	2 cut(s)	26, 71
RsaI	GTAC	2 cut(s)	455, 830
RsaNI	GTAC	2 cut(s)	454, 829
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	9 cut(s)	354, 515, 620, 711, 728, 765, 783, 807, 816
Sau3AI	GATC	2 cut(s)	156, 850
Sau96I	GGNCC	1 cut(s)	642
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	2 cut(s)	601, 704
ScrFI	CCNGG	3 cut(s)	202, 837, 1002
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	5 cut(s)	616, 725, 756, 817, 860
SsiI	CCGC	1 cut(s)	721
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	3 cut(s)	200, 835, 1000
TaaI	ACNGT	3 cut(s)	169, 453, 679
TaiI	ACGT	1 cut(s)	939
TaqI	TCGA	2 cut(s)	191, 791
TasI	AATT	5 cut(s)	616, 725, 756, 817, 860
TatI	WGTACW	2 cut(s)	453, 828
TfiI	GAWTC	4 cut(s)	31, 197, 445, 715
Tru1I	TTAA	9 cut(s)	354, 515, 620, 711, 728, 765, 783, 807, 816
Tru9I	TTAA	9 cut(s)	354, 515, 620, 711, 728, 765, 783, 807, 816
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	1 cut(s)	1004
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	7 cut(s)	17, 333, 417, 615, 890, 971, 1008
TspRI	CASTG	1 cut(s)	677
VspI	ATTAAT	1 cut(s)	816
XceI	RCATGY	2 cut(s)	149, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.