Rh6CG139700

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008837
Physical Location & Seq
Reverse (-)
18067724 .. 18068101
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG139700.1

Sequence Viewer

Length: 378 bp
ATGGCTGGACACTGGACTGTCTCTTTGTTTGAAGAGTCTGAAAGAGCATTTAAGAATCAGCGGGAATTAAATGAGGAGATGCGTAAGGAAACTAGAATTGCCATTAAAGAGTTGGGCGACATTAAGTCTTCGATTGATGGTGTTATTAACCAGATTAATTCAGTCATGTACAATCCAGGCTCTGAAATGGATCGGGAACAATTAGATTTCACAATGAAGGAAATCAAGAGCAAGCTGGGAGCGTTTCTGAATAAGGTTGAGGATTTGGAGAAGGACGTAGAAAAGACCATAAAGTATATAAGGAAGGCTAGGGATGATGTTCATATATATCATGAACACCCAGGTCACGCAGGTCAAAAAAGGAGCATTTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

125

Amino Acids

14.57

Weight (kDa)

6.22

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 2 - 106 3.3e-13 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 198
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 32
AhdI GACNNNNNGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 175, 340
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AseI ATTAAT 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 177, 342
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 2 cut(s) 93, 309
BfuAI ACCTGC 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 177, 342
BmeRI GACNNNNNGTC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 177, 342
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 2 cut(s) 177, 342
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 61
BspHI TCATGA 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 177, 342
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 233
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 177, 342
BstSCI CCNGG 2 cut(s) 175, 340
BstV2I GAAGAC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 331
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 166, 332
CviJI RGCY 4 cut(s) 5, 180, 235, 308
CviKI_1 RGCY 4 cut(s) 5, 180, 235, 308
CviQI GTAC 1 cut(s) 169
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DriI GACNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 175, 340
FaeI CATG 2 cut(s) 169, 335
FaiI YATR 8 cut(s) 167, 290, 297, 299, 324, 326, 328, 333
FatI CATG 2 cut(s) 165, 331
FauI CCCGC 1 cut(s) 54
FokI GGATG 1 cut(s) 326
FspBI CTAG 2 cut(s) 93, 309
GsaI CCCAGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 169, 335
HinfI GANTC 2 cut(s) 35, 55
Hpy188I TCNGA 3 cut(s) 40, 184, 249
Hpy188III TCNNGA 3 cut(s) 194, 226, 332
HpyAV CCTTC 3 cut(s) 211, 265, 298
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 169, 335
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 239, 363
LpnPI CCDG 7 cut(s) 162, 164, 189, 221, 327, 336, 354
LweI GCATC 1 cut(s) 69
MaeI CTAG 2 cut(s) 93, 309
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 44, 120
MluCI AATT 4 cut(s) 65, 96, 157, 200
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 2 cut(s) 67, 253
MseI TTAA 6 cut(s) 51, 68, 105, 123, 147, 156
MspA1I CMGCKG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 177, 342
MvaI CCWGG 2 cut(s) 177, 342
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 169, 335
NmuCI GTSAC 1 cut(s) 344
PagI TCATGA 1 cut(s) 331
PfeI GAWTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 175, 340
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 175, 340
PstNI CAGNNNCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 6 cut(s) 51, 68, 105, 123, 147, 156
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 177, 342
SetI ASST 5 cut(s) 237, 258, 279, 346, 355
SfaNI GCATC 1 cut(s) 69
Sse9I AATT 4 cut(s) 65, 96, 157, 200
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 93, 309
StyD4I CCNGG 2 cut(s) 175, 340
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 131
TasI AATT 4 cut(s) 65, 96, 157, 200
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 6 cut(s) 51, 68, 105, 123, 147, 156
Tru9I TTAA 6 cut(s) 51, 68, 105, 123, 147, 156
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 230, 311, 348
TspRI CASTG 1 cut(s) 17
VspI ATTAAT 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 2 cut(s) 93, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.