Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006493.1

Orthogroup ID

OG0008837

Physical Location & Seq

Genomic Coordinates Reverse (-)

52091 .. 53269

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006493.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgacgacacatacagctaagattcctatgaaaaattcctatgtcaagttagtctccacagctgaatggaagtcatttcaggaagcttgcaaggaaaatgcagacttgcaatcgtgggacacagacctcaaaacccatgcagaagaaatgttgaaaaccctcaaggatgaaggaattctctcgattgattcctggaaaccattcacacactatgcgtgcaattcaaacaagaagattgtgcagcatatcttggcattcaaggaagacataactaaagggaaggggagtagtaagaagaagaagagaaacgaagaaagagtgaacatcatggctgatgagtacattaagaatagctcaaatatgctggatttcctttctgagatagaaaacttcctcatgcttgctcgtaatagccattcatatattgcaacagtgattcaacagtactttgtggcacacaatggcatgagtactgaagctgagtcctacgggaagattgcagataacttaaaaaagctcaaggactctgataataccttcgaccattctgctgaaaatttgctcaaaaaggcagtaagtttgaagagtcagcatgaagaaatgcttcataaattgcaagacgaaatcaataaatttagtaagaaggagaaacgcacgaaatcatggaagaacctcgcgtatatgatatttgtaggcgctgtggttggtttggctattgccggaattgcgactgcagtcatagctgctccacctcttgcagcagcaattgctgctgccattgtcccaacagcaacggctggacactggactatctcttggtttgaagagtctgaaaaagcatttaagaatcagcgggaagtaaatgaggcgaggcgtaaggaaactagaattgccattaaagagttgggcaacattaagtcttcgattgatggtgttattaaacagattaattcagtcatgcacaagccatgccctgtaatggatcgggaactattagatttcacaatgaaggaaatcaagagcaagctgggagagtttctgaataaggttgaggttttggagaaggacatagaaaagaccaaaaaggatataaggaaggcaagggatgatgttcatatcatggacacccaggtcaagcaggtcaaaaaaaggagtagtttgttttcaaaattagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

392

Amino Acids

44.55

Weight (kDa)

9.25

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06181
rosa_chinensis	RchiOBHm_Chr6g0265941
rosa_laevigata	RLG00000014144
rosa_multiflora	Rmu_sc0000596.1_g000062 Rmu_sc0006493.1_g000014 Rmu_sc0006952.1_g000005 Rmu_sc0019932.1_g000003 Rmu_sc0019932.1_g000004
rosa_roxburghii	Rroxscaffold_177G00434100 Rroxscaffold_7G00204890 Rroxscaffold_7G00204950
rosa_rugosa	Rorug06G0001600
rosa_samantha	Rh6AG120900 Rh6AG143000 Rh6BG114400 Rh6BG143200 Rh6CG112700 Rh6CG139700 Rh6CG139800 Rh6DG102200 Rh6DG127500
rosa_wichuraiana	Rw6G010380 Rw6G012370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1130
Acc36I	ACCTGC	1 cut(s)	1129
AccII	CGCG	1 cut(s)	677
AciI	CCGC	1 cut(s)	853
AclWI	GGATC	1 cut(s)	990
AcsI	RAATTY	4 cut(s)	34, 174, 556, 632
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	3 cut(s)	341, 446, 472
AfiI	CCNNNNNNNGG	1 cut(s)	979
AgsI	TTSAA	7 cut(s)	154, 225, 259, 440, 583, 824, 1167
AjnI	CCWGG	2 cut(s)	191, 1128
AluBI	AGCT	8 cut(s)	17, 62, 86, 354, 479, 517, 743, 1027
AluI	AGCT	8 cut(s)	17, 62, 86, 354, 479, 517, 743, 1027
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	990
ApeKI	GCWGC	6 cut(s)	241, 743, 758, 761, 770, 773
ApoI	RAATTY	4 cut(s)	34, 174, 556, 632
AseI	ATTAAT	1 cut(s)	948
Asp700I	GAANNNNTTC	3 cut(s)	174, 200, 603
AspLEI	GCGC	1 cut(s)	698
BbsI	GAAGAC	2 cut(s)	270, 912
BbvI	GCAGC	6 cut(s)	253, 730, 757, 760, 770, 773
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	1 cut(s)	810
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	193, 1130
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	885
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	699
BfuAI	ACCTGC	1 cut(s)	1129
BisI	GCNGC	6 cut(s)	242, 744, 759, 762, 771, 774
BlsI	GCNGC	6 cut(s)	243, 745, 760, 763, 772, 775
BmcAI	AGTACT	2 cut(s)	446, 472
Bme1390I	CCNGG	2 cut(s)	193, 1130
BmrFI	CCNGG	2 cut(s)	193, 1130
BoxI	GACNNNNGTC	1 cut(s)	734
BpiI	GAAGAC	2 cut(s)	270, 912
BpuEI	CTTGAG	2 cut(s)	146, 503
BsaJI	CCNNGG	1 cut(s)	1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	979
Bse1I	ACTGG	1 cut(s)	809
BseBI	CCWGG	2 cut(s)	193, 1130
BseDI	CCNNGG	1 cut(s)	1128
BseGI	GGATG	2 cut(s)	172, 1111
BseLI	CCNNNNNNNGG	1 cut(s)	979
BseMII	CTCAG	2 cut(s)	369, 471
BseNI	ACTGG	1 cut(s)	809
BseXI	GCAGC	6 cut(s)	253, 730, 757, 760, 770, 773
BseYI	CCCAGC	1 cut(s)	1027
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	2 cut(s)	131, 767
BslI	CCNNNNNNNGG	1 cut(s)	979
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	131, 767
BsmI	GAATGC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	982
BspACI	CCGC	1 cut(s)	853
BspCNI	CTCAG	2 cut(s)	370, 472
BspFNI	CGCG	1 cut(s)	677
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	1129
BspPI	GGATC	1 cut(s)	990
BsrI	ACTGG	1 cut(s)	809
BssECI	CCNNGG	1 cut(s)	1128
BssMI	GATC	1 cut(s)	982
Bst2UI	CCWGG	2 cut(s)	193, 1130
Bst4CI	ACNGT	2 cut(s)	433, 444
Bst6I	CTCTTC	3 cut(s)	296, 578, 819
BstAPI	GCANNNNNTGC	2 cut(s)	767, 770
BstC8I	GCNNGC	4 cut(s)	88, 217, 402, 1025
BstDEI	CTNAG	3 cut(s)	18, 378, 480
BstF5I	GGATG	2 cut(s)	172, 1111
BstFNI	CGCG	1 cut(s)	677
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	1 cut(s)	985
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	982
BstMWI	GCNNNNNNNGC	4 cut(s)	725, 740, 767, 770
BstNI	CCWGG	2 cut(s)	193, 1130
BstPAI	GACNNNNGTC	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	191, 1128
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	6 cut(s)	253, 730, 757, 760, 770, 773
BstV2I	GAAGAC	2 cut(s)	270, 912
BtsCI	GGATG	2 cut(s)	172, 1111
BtsIMutI	CAGTG	2 cut(s)	438, 802
BveI	ACCTGC	1 cut(s)	1129
Cac8I	GCNNGC	4 cut(s)	88, 217, 402, 1025
CfoI	GCGC	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	340, 445, 471
CviAII	CATG	9 cut(s)	137, 328, 397, 466, 593, 663, 958, 969, 1120
CviQI	GTAC	3 cut(s)	340, 445, 471
DdeI	CTNAG	3 cut(s)	18, 378, 480
DpnI	GATC	1 cut(s)	984
DpnII	GATC	1 cut(s)	982
DrdI	GACNNNNNNGTC	1 cut(s)	1130
DseDI	GACNNNNNNGTC	1 cut(s)	1130
Eam1104I	CTCTTC	3 cut(s)	296, 578, 819
EarI	CTCTTC	3 cut(s)	296, 578, 819
Eco57I	CTGAAG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	191, 1128
FaeI	CATG	9 cut(s)	140, 331, 400, 469, 596, 666, 961, 972, 1123
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	2 cut(s)	131, 767
FatI	CATG	9 cut(s)	136, 327, 396, 465, 592, 662, 957, 968, 1119
FauI	CCCGC	1 cut(s)	846
Fnu4HI	GCNGC	6 cut(s)	242, 744, 759, 762, 771, 774
FokI	GGATG	2 cut(s)	179, 1118
Fsp4HI	GCNGC	6 cut(s)	242, 744, 759, 762, 771, 774
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	6 cut(s)	242, 744, 759, 762, 771, 774
GsaI	CCCAGC	1 cut(s)	1031
HaeII	RGCGCY	1 cut(s)	699
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	9 cut(s)	140, 331, 400, 469, 596, 666, 961, 972, 1123
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	8 cut(s)	22, 188, 436, 482, 524, 586, 827, 847
HpaII	CCGG	1 cut(s)	720
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	379, 529, 832, 1041
Hpy188III	TCNNGA	4 cut(s)	80, 181, 986, 1018
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	7 cut(s)	164, 274, 547, 637, 1003, 1057, 1090
HpyCH4III	ACNGT	2 cut(s)	433, 444
HpyF10VI	GCNNNNNNNGC	4 cut(s)	725, 740, 767, 770
HpyF3I	CTNAG	3 cut(s)	18, 378, 480
Hsp92II	CATG	9 cut(s)	140, 331, 400, 469, 596, 666, 961, 972, 1123
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	1 cut(s)	982
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	6 cut(s)	253, 730, 757, 760, 770, 773
MaeI	CTAG	1 cut(s)	885
MalI	GATC	1 cut(s)	984
MboI	GATC	1 cut(s)	982
MfeI	CAATTG	1 cut(s)	765
MlyI	GAGTC	4 cut(s)	491, 518, 595, 836
MnlI	CCTC	8 cut(s)	137, 170, 404, 683, 762, 859, 864, 1045
MroXI	GAANNNNTTC	3 cut(s)	174, 200, 603
MseI	TTAA	7 cut(s)	345, 509, 843, 897, 915, 939, 948
MspA1I	CMGCKG	2 cut(s)	62, 853
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	2 cut(s)	193, 1130
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	193, 1130
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	725, 740, 767, 770
NdeII	GATC	1 cut(s)	982
NlaIII	CATG	9 cut(s)	140, 331, 400, 469, 596, 666, 961, 972, 1123
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	3 cut(s)	174, 200, 603
PfeI	GAWTC	4 cut(s)	22, 188, 436, 847
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	243, 745, 760, 763, 772, 775
PleI	GAGTC	4 cut(s)	490, 518, 594, 835
PpsI	GAGTC	4 cut(s)	490, 518, 594, 835
PshAI	GACNNNNGTC	1 cut(s)	734
PshBI	ATTAAT	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	191, 1128
PspFI	CCCAGC	1 cut(s)	1027
PspGI	CCWGG	2 cut(s)	191, 1128
PstI	CTGCAG	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	341, 446, 472
RsaNI	GTAC	3 cut(s)	340, 445, 471
SaqAI	TTAA	7 cut(s)	345, 509, 843, 897, 915, 939, 948
SatI	GCNGC	6 cut(s)	242, 744, 759, 762, 771, 774
Sau3AI	GATC	1 cut(s)	982
ScaI	AGTACT	2 cut(s)	446, 472
SchI	GAGTC	4 cut(s)	491, 518, 595, 836
ScrFI	CCNGG	2 cut(s)	193, 1130
SfcI	CTRYAG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	161, 518
SmoI	CTYRAG	2 cut(s)	161, 518
SsiI	CCGC	1 cut(s)	853
SspMI	CTAG	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	191, 1128
TaaI	ACNGT	2 cut(s)	433, 444
TaqI	TCGA	3 cut(s)	182, 540, 923
TatI	WGTACW	3 cut(s)	339, 444, 470
TfiI	GAWTC	4 cut(s)	22, 188, 436, 847
Tru1I	TTAA	7 cut(s)	345, 509, 843, 897, 915, 939, 948
Tru9I	TTAA	7 cut(s)	345, 509, 843, 897, 915, 939, 948
TscAI	CASTG	2 cut(s)	438, 809
TseI	GCWGC	6 cut(s)	241, 743, 758, 761, 770, 773
TspDTI	ATGAA	7 cut(s)	44, 183, 408, 596, 609, 1022, 1103
TspRI	CASTG	2 cut(s)	438, 809
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	4 cut(s)	34, 174, 556, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XmnI	GAANNNNTTC	3 cut(s)	174, 200, 603
XspI	CTAG	1 cut(s)	885
ZrmI	AGTACT	2 cut(s)	446, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.