Rmu_sc0019932.1_g000004

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019932.1
OG0008837
Physical Location & Seq
Reverse (-)
16026 .. 18527
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019932.1_g000004.1.cds

Sequence Viewer

Length: 1017 bp
atggtttggttagtggggggatgcctctggagagtacagagagtgggtttggggagattgggcgatgagggagaggagagagtgtctagtcggagactggttttgatggtgaagagattgagagcgggaagtgaggtaggagaggagggttgtgttgcgctcatgttggcggttgagcggagctgcgaagggatttgtgtaaccccaaagggcgttgtgggatgtaggagaggaggagggaggagagaggagaggatcagaggaggcgagttagtctccacagctgaatggaagtcatttcaggaacattgcaaggaaaacgcagacttgcaatcgtgggacacagaactcaaagaacatgcagaagagatcttgaaaaccgtcaagagtgaaggaggtctctcgattgattcctggaaaccaatcacagactactggtggtgttcaaacaagaagattgtggaagcaatcttggcattcaagaaaggtataactgaaggggaggggagtagtaggaagaagaagaaaaatgaagaaagagggaacatcctggctgacgagtatattaagaatagctcaaacatgctggatttactttctgaaatggaaaacttcctcctgcttgctcgtaatagccattcatatatttcaaaaatgattcaacagtactttgagatacccaatggcatgagtggagctgagttctacgggaagattgaggataacttaaaaaagctcaggggctctgataatatctttgaccattctgctgaaaacttgctcaaaaaggcagaaagtttgaagagtcagcatgaagaaatgcttcgtaatttgcaagccgaaatctctaaacttattaagaaggagaaacgcgcgaaatcatggacggacgtcacgtatatgatacttgtaggcactgcggttggtttggctattgccggaattgtgactgcagttatagctgctccacatgttgcagaagctattacttctgccattggccccattaccccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

338

Amino Acids

37.65

Weight (kDa)

8.07

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 894
AccBSI CCGCTC 2 cut(s) 125, 178
AccII CGCG 2 cut(s) 873, 875
AciI CCGC 4 cut(s) 125, 170, 178, 920
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 891
AfaI GTAC 2 cut(s) 36, 668
AflIII ACRYGT 1 cut(s) 970
AgsI TTSAA 6 cut(s) 376, 447, 481, 651, 662, 802
AjnI CCWGG 2 cut(s) 413, 549
AluBI AGCT 7 cut(s) 183, 284, 576, 698, 736, 962, 983
AluI AGCT 7 cut(s) 183, 284, 576, 698, 736, 962, 983
Alw26I GTCTC 3 cut(s) 88, 280, 404
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 1000
ApeKI GCWGC 2 cut(s) 183, 962
Asp700I GAANNNNTTC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 160, 875
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 1 cut(s) 121
BanII GRGCYC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 170, 949
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 415, 551
BcoDI GTCTC 3 cut(s) 88, 280, 404
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 951
BglII AGATCT 1 cut(s) 369
BisI GCNGC 2 cut(s) 184, 963
BlsI GCNGC 2 cut(s) 185, 964
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 415, 551
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 1 cut(s) 1003
BmrFI CCNGG 2 cut(s) 415, 551
BmsI GCATC 1 cut(s) 11
BoxI GACNNNNGTC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse1I ACTGG 2 cut(s) 102, 440
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 415, 551
BseGI GGATG 3 cut(s) 26, 227, 546
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 690, 751
BseNI ACTGG 2 cut(s) 102, 440
BseRI GAGGAG 7 cut(s) 89, 158, 246, 249, 256, 263, 276
BseXI GCAGC 2 cut(s) 170, 949
Bsh1236I CGCG 2 cut(s) 873, 875
BshFI GGCC 1 cut(s) 1002
BsiSI CCGG 1 cut(s) 939
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 3 cut(s) 88, 280, 404
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 1002
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 2 cut(s) 255, 369
BspACI CCGC 4 cut(s) 125, 170, 178, 920
BspANI GGCC 1 cut(s) 1002
BspCNI CTCAG 2 cut(s) 691, 750
BspFNI CGCG 2 cut(s) 873, 875
BspLI GGNNCC 1 cut(s) 1003
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 2 cut(s) 125, 178
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 102, 440
BssMI GATC 2 cut(s) 255, 369
BssNI GRCGYC 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 415, 551
Bst4CI ACNGT 2 cut(s) 382, 666
Bst6I CTCTTC 3 cut(s) 107, 360, 797
BstACI GRCGYC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 897
BstC8I GCNNGC 2 cut(s) 624, 837
BstDEI CTNAG 2 cut(s) 699, 737
BstF5I GGATG 3 cut(s) 26, 227, 546
BstFNI CGCG 2 cut(s) 873, 875
BstHHI GCGC 2 cut(s) 160, 875
BstKTI GATC 2 cut(s) 258, 372
BstMAI GTCTC 3 cut(s) 88, 280, 404
BstMBI GATC 2 cut(s) 255, 369
BstMWI GCNNNNNNNGC 2 cut(s) 473, 959
BstNI CCWGG 2 cut(s) 415, 551
BstNSI RCATGY 3 cut(s) 362, 586, 974
BstPAI GACNNNNGTC 1 cut(s) 890
BstSCI CCNGG 2 cut(s) 413, 549
BstSFI CTRYAG 1 cut(s) 951
BstUI CGCG 2 cut(s) 873, 875
BstV1I GCAGC 2 cut(s) 170, 949
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 1 cut(s) 1002
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 26, 227, 546
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 1 cut(s) 915
Cac8I GCNNGC 2 cut(s) 624, 837
CfoI GCGC 2 cut(s) 160, 875
Cfr13I GGNCC 1 cut(s) 1001
Csp6I GTAC 2 cut(s) 35, 667
CviAII CATG 7 cut(s) 163, 359, 583, 688, 812, 882, 971
CviQI GTAC 2 cut(s) 35, 667
DdeI CTNAG 2 cut(s) 699, 737
DpnI GATC 2 cut(s) 257, 371
DpnII GATC 2 cut(s) 255, 369
Eam1104I CTCTTC 3 cut(s) 107, 360, 797
EarI CTCTTC 3 cut(s) 107, 360, 797
Eco24I GRGCYC 1 cut(s) 746
Eco31I GGTCTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 413, 549
EcoT38I GRGCYC 1 cut(s) 746
FaeI CATG 7 cut(s) 166, 362, 586, 691, 815, 885, 974
FalI AAGNNNNNCTT 2 cut(s) 807, 839
FaqI GGGAC 1 cut(s) 353
FatI CATG 7 cut(s) 162, 358, 582, 687, 811, 881, 970
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 184, 963
FokI GGATG 3 cut(s) 33, 234, 533
FriOI GRGCYC 1 cut(s) 746
Fsp4HI GCNGC 2 cut(s) 184, 963
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 159, 874
GluI GCNGC 2 cut(s) 184, 963
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 1 cut(s) 1002
HapII CCGG 1 cut(s) 939
HhaI GCGC 2 cut(s) 160, 875
Hin1I GRCGYC 1 cut(s) 891
Hin1II CATG 7 cut(s) 166, 362, 586, 691, 815, 885, 974
Hin6I GCGC 2 cut(s) 158, 873
HinP1I GCGC 2 cut(s) 158, 873
HinfI GANTC 3 cut(s) 410, 658, 805
HpaII CCGG 1 cut(s) 939
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 93, 260, 601, 748
Hpy188III TCNNGA 6 cut(s) 28, 302, 373, 385, 403, 481
HpyAV CCTTC 4 cut(s) 182, 386, 491, 856
HpyCH4III ACNGT 2 cut(s) 382, 666
HpyCH4IV ACGT 2 cut(s) 891, 896
HpyCH4V TGCA 6 cut(s) 312, 331, 362, 835, 953, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 959
HpyF3I CTNAG 2 cut(s) 699, 737
HpySE526I ACGT 2 cut(s) 891, 896
Hsp92I GRCGYC 1 cut(s) 891
Hsp92II CATG 7 cut(s) 166, 362, 586, 691, 815, 885, 974
HspAI GCGC 2 cut(s) 158, 873
Kzo9I GATC 2 cut(s) 255, 369
LmnI GCTCC 3 cut(s) 180, 695, 970
Lsp1109I GCAGC 2 cut(s) 170, 949
LweI GCATC 1 cut(s) 11
MaeI CTAG 1 cut(s) 87
MaeII ACGT 2 cut(s) 891, 896
MaeIII GTNAC 3 cut(s) 199, 892, 946
MalI GATC 2 cut(s) 257, 371
MbiI CCGCTC 2 cut(s) 125, 178
MboI GATC 2 cut(s) 255, 369
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 746
MluCI AATT 2 cut(s) 829, 942
MlyI GAGTC 1 cut(s) 814
MmeI TCCRAC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 3 cut(s) 567, 728, 858
MslI CAYNNNNRTG 1 cut(s) 899
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 939
MspR9I CCNGG 2 cut(s) 415, 551
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 415, 551
MvnI CGCG 2 cut(s) 873, 875
MwoI GCNNNNNNNGC 2 cut(s) 473, 959
NdeII GATC 2 cut(s) 255, 369
NlaIII CATG 7 cut(s) 166, 362, 586, 691, 815, 885, 974
NlaIV GGNNCC 1 cut(s) 1003
NmuCI GTSAC 2 cut(s) 892, 946
NspI RCATGY 3 cut(s) 362, 586, 974
PciI ACATGT 1 cut(s) 970
PcsI WCGNNNNNNNCGW 1 cut(s) 893
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 2 cut(s) 410, 658
PfoI TCCNGGA 1 cut(s) 413
PkrI GCNGC 2 cut(s) 185, 964
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
Ppu21I YACGTR 1 cut(s) 897
PscI ACATGT 1 cut(s) 970
PshAI GACNNNNGTC 1 cut(s) 890
Psp6I CCWGG 2 cut(s) 413, 549
PspGI CCWGG 2 cut(s) 413, 549
PspN4I GGNNCC 1 cut(s) 1003
PspPI GGNCC 1 cut(s) 1001
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 36, 668
RsaNI GTAC 2 cut(s) 35, 667
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 3 cut(s) 567, 728, 858
SatI GCNGC 2 cut(s) 184, 963
Sau3AI GATC 2 cut(s) 255, 369
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 1 cut(s) 814
ScrFI CCNGG 2 cut(s) 415, 551
SduI GDGCHC 1 cut(s) 746
SfaNI GCATC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 951
SmiMI CAYNNNNRTG 1 cut(s) 899
Sse9I AATT 2 cut(s) 829, 942
SsiI CCGC 4 cut(s) 125, 170, 178, 920
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 413, 549
TaaI ACNGT 2 cut(s) 382, 666
TaiI ACGT 2 cut(s) 894, 899
TaqI TCGA 1 cut(s) 404
TasI AATT 2 cut(s) 829, 942
TatI WGTACW 2 cut(s) 34, 666
TfiI GAWTC 2 cut(s) 410, 658
Tru1I TTAA 3 cut(s) 567, 728, 858
Tru9I TTAA 3 cut(s) 567, 728, 858
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 2 cut(s) 892, 946
TseI GCWGC 2 cut(s) 183, 962
Tsp45I GTSAC 2 cut(s) 892, 946
TspDTI ATGAA 3 cut(s) 546, 630, 828
TspGWI ACGGA 1 cut(s) 902
TspRI CASTG 1 cut(s) 922
XceI RCATGY 3 cut(s) 362, 586, 974
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 1 cut(s) 87
ZraI GACGTC 1 cut(s) 892
ZrmI AGTACT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.