Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Forward (+)

9751444 .. 9753373

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 123 bp

ATGACAGTTTTGAAAATTCCAAGGTTCACTGACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCTGGTTTCTTTGCAGTTTCTATTGGCTCTCCTGTTGGTGTGAAGTCAGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

40

Amino Acids

4.15

Weight (kDa)

9.99

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	2 cut(s)	56, 120
AluI	AGCT	2 cut(s)	56, 120
ApoI	RAATTY	1 cut(s)	15
BfaI	CTAG	2 cut(s)	53, 121
BsaJI	CCNNGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	27
CviJI	RGCY	3 cut(s)	56, 93, 120
CviKI_1	RGCY	3 cut(s)	56, 93, 120
Eco130I	CCWWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FspBI	CTAG	2 cut(s)	53, 121
Hpy166II	GTNNAC	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	42, 47, 54, 111
MaeI	CTAG	2 cut(s)	53, 121
MluCI	AATT	1 cut(s)	15
SetI	ASST	3 cut(s)	26, 58, 122
SgeI	CNNG	6 cut(s)	33, 65, 69, 74, 81, 110
Sse9I	AATT	1 cut(s)	15
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	53, 121
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	1 cut(s)	15
TscAI	CASTG	1 cut(s)	34
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	15
XspI	CTAG	2 cut(s)	53, 121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.