Rh2CG563900

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013766
Physical Location & Seq
Forward (+)
74432089 .. 74443883
11795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG563900.1

Sequence Viewer

Length: 666 bp
ATGGCAGTCTCTCAATCTCTCTGGGTACCGCTGACACAGGCGAGCCAAAAAAAAAAAAAAAAAAAGAAGAGGTTGCCCGGACACCCATCAATCTTCTATAAACACCCCACAACGGCAAGTGATCAATTGCCCAGCGGGTCTCTGGTCTCTCCGGGCACCTGCGACTCCATGAAATCAGTGGATACGTTTCCCTCAGTTCCTACCCAATCTCTCCGGGAACCTGCAAATCTCTCCGGGTACCCAGCTCTCCACCAACATTCAAGCATCAGAGACTCCGGGATTCAAAAAAAAAAAAAAAACTCTCCGGTACCCACTAGCCTCCGGCACCCAGTTCACCTTTTGAGGTCTCGCTACCTCTCTCCTCCCGTCTCCTCTCTTGTTGAACCCGATTCAACGGCCGGGTCACTGGCTGAGCATCTTGCTGAGTTTTATGAGTATCGCAAGGGCTTGAATCTTGCTAGAACTTTTCAGTTTCCAACATGGCGGATCTCAGCCCCAGAGGCACAGAGCAAGCAGGAAAACAACTTTAACAAATTATTGGGCCTGGATGGTATCCTGATTCTAGTAACTGGGAGGCAGAGTGAAGAAAAACCGTTGGGTGCAAATAGGCTTCTTATAAAGGACATCCAAGAGCAATTTAAGGCGAAGTCAGGGAAATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

221

Amino Acids

24.48

Weight (kDa)

9.93

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 167, 229
Acc65I GGTACC 3 cut(s) 25, 237, 307
AccB1I GGYRCC 5 cut(s) 25, 155, 237, 307, 324
AciI CCGC 3 cut(s) 29, 135, 484
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 1 cut(s) 396
AfaI GTAC 3 cut(s) 27, 239, 309
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 5 cut(s) 261, 284, 383, 393, 451
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 6 cut(s) 13, 144, 151, 264, 351, 373
AlwI GGATC 1 cut(s) 494
AoxI GGCC 2 cut(s) 396, 541
Asp718I GGTACC 3 cut(s) 25, 237, 307
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 6 cut(s) 78, 153, 215, 235, 277, 400
AsuHPI GGTGA 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 158
BanI GGYRCC 5 cut(s) 25, 155, 237, 307, 324
BccI CCATC 2 cut(s) 94, 542
BceAI ACGGC 2 cut(s) 129, 411
BciT130I CCWGG 1 cut(s) 545
BciVI GTATCC 2 cut(s) 175, 563
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 6 cut(s) 78, 153, 215, 235, 277, 400
BcoDI GTCTC 6 cut(s) 13, 144, 151, 264, 351, 373
BfaI CTAG 3 cut(s) 315, 459, 563
BfuAI ACCTGC 2 cut(s) 167, 229
BfuI GTATCC 2 cut(s) 175, 563
BglI GCCNNNNNGGC 1 cut(s) 500
BlpI GCTNAGC 1 cut(s) 411
Bme1390I CCNGG 7 cut(s) 78, 153, 215, 235, 277, 400, 545
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 6 cut(s) 27, 157, 219, 239, 309, 326
BmrFI CCNGG 7 cut(s) 78, 153, 215, 235, 277, 400, 545
BmrI ACTGGG 2 cut(s) 323, 579
BmsI GCATC 2 cut(s) 273, 424
BmuI ACTGGG 2 cut(s) 323, 579
Bpu1102I GCTNAGC 1 cut(s) 411
BpuMI CCSGG 6 cut(s) 78, 153, 215, 235, 277, 400
BsaI GGTCTC 3 cut(s) 144, 151, 351
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 3 cut(s) 329, 411, 574
BseBI CCWGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 553, 624
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 4 cut(s) 207, 402, 414, 504
BseNI ACTGG 3 cut(s) 329, 411, 574
BseRI GAGGAG 2 cut(s) 351, 361
BseSI GKGCMC 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 396
BseYI CCCAGC 2 cut(s) 131, 241
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 2 cut(s) 398, 543
BshNI GGYRCC 5 cut(s) 25, 155, 237, 307, 324
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 8 cut(s) 78, 152, 214, 234, 276, 305, 322, 399
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 6 cut(s) 13, 144, 151, 264, 351, 373
BsmBI CGTCTC 1 cut(s) 373
BsnI GGCC 2 cut(s) 398, 543
Bso31I GGTCTC 3 cut(s) 144, 151, 351
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 121, 486
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 3 cut(s) 29, 135, 484
BspANI GGCC 2 cut(s) 398, 543
BspCNI CTCAG 4 cut(s) 206, 403, 415, 503
BspLI GGNNCC 6 cut(s) 27, 157, 219, 239, 309, 326
BspMI ACCTGC 2 cut(s) 167, 229
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 5 cut(s) 25, 155, 237, 307, 324
BspTNI GGTCTC 3 cut(s) 144, 151, 351
BsrI ACTGG 3 cut(s) 329, 411, 574
BssMI GATC 2 cut(s) 121, 486
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 43, 512
BstDEI CTNAG 4 cut(s) 193, 411, 423, 490
BstF5I GGATG 2 cut(s) 553, 624
BstKTI GATC 2 cut(s) 124, 489
BstMAI GTCTC 6 cut(s) 13, 144, 151, 264, 351, 373
BstMBI GATC 2 cut(s) 121, 486
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 1 cut(s) 545
BstSCI CCNGG 7 cut(s) 76, 151, 213, 233, 275, 398, 543
BstSLI GKGCMC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BstZI CGGCCG 1 cut(s) 396
BsuI GTATCC 2 cut(s) 175, 563
BsuRI GGCC 2 cut(s) 398, 543
BtsCI GGATG 2 cut(s) 553, 624
BtsIMutI CAGTG 2 cut(s) 183, 404
BveI ACCTGC 2 cut(s) 167, 229
Cac8I GCNNGC 2 cut(s) 43, 512
Cfr13I GGNCC 1 cut(s) 541
Csp6I GTAC 3 cut(s) 26, 238, 308
CviAII CATG 2 cut(s) 169, 480
CviJI RGCY 9 cut(s) 45, 245, 318, 398, 410, 447, 494, 543, 610
CviKI_1 RGCY 9 cut(s) 45, 245, 318, 398, 410, 447, 494, 543, 610
CviQI GTAC 3 cut(s) 26, 238, 308
DdeI CTNAG 4 cut(s) 193, 411, 423, 490
DpnI GATC 2 cut(s) 123, 488
DpnII GATC 2 cut(s) 121, 486
EaeI YGGCCR 1 cut(s) 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 499
EclXI CGGCCG 1 cut(s) 396
Eco31I GGTCTC 3 cut(s) 144, 151, 351
Eco52I CGGCCG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 2 cut(s) 172, 483
FaiI YATR 5 cut(s) 99, 170, 432, 481, 617
FatI CATG 2 cut(s) 168, 479
FauI CCCGC 1 cut(s) 128
FbaI TGATCA 1 cut(s) 121
FokI GGATG 2 cut(s) 560, 611
FspBI CTAG 3 cut(s) 315, 459, 563
GsaI CCCAGC 2 cut(s) 135, 245
HaeIII GGCC 2 cut(s) 398, 543
HapII CCGG 8 cut(s) 78, 152, 214, 234, 276, 305, 322, 399
Hin1II CATG 2 cut(s) 172, 483
HinfI GANTC 6 cut(s) 164, 272, 280, 389, 451, 559
HpaII CCGG 8 cut(s) 78, 152, 214, 234, 276, 305, 322, 399
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 269, 661
Hpy188III TCNNGA 1 cut(s) 556
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 224, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 4 cut(s) 193, 411, 423, 490
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 2 cut(s) 172, 483
KpnI GGTACC 3 cut(s) 29, 241, 311
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 486
LweI GCATC 2 cut(s) 273, 424
MaeI CTAG 3 cut(s) 315, 459, 563
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 402, 565
MalI GATC 2 cut(s) 123, 488
MboI GATC 2 cut(s) 121, 486
MboII GAAGA 3 cut(s) 79, 85, 596
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 3 cut(s) 125, 533, 635
MlyI GAGTC 2 cut(s) 158, 266
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 9 cut(s) 63, 202, 329, 336, 365, 372, 382, 493, 567
MseI TTAA 2 cut(s) 528, 639
MspA1I CMGCKG 2 cut(s) 31, 135
MspI CCGG 8 cut(s) 78, 152, 214, 234, 276, 305, 322, 399
MspR9I CCNGG 7 cut(s) 78, 153, 215, 235, 277, 400, 545
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 6 cut(s) 78, 153, 215, 235, 277, 400
NdeII GATC 2 cut(s) 121, 486
NlaIII CATG 2 cut(s) 172, 483
NlaIV GGNNCC 6 cut(s) 27, 157, 219, 239, 309, 326
NmuCI GTSAC 1 cut(s) 402
PaqCI CACCTGC 1 cut(s) 167
PfeI GAWTC 4 cut(s) 280, 389, 451, 559
PfoI TCCNGGA 2 cut(s) 213, 275
PleI GAGTC 2 cut(s) 158, 266
PpsI GAGTC 2 cut(s) 158, 266
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 2 cut(s) 131, 241
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 6 cut(s) 27, 157, 219, 239, 309, 326
PspPI GGNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 486
RsaI GTAC 3 cut(s) 27, 239, 309
RsaNI GTAC 3 cut(s) 26, 238, 308
SaqAI TTAA 2 cut(s) 528, 639
Sau3AI GATC 2 cut(s) 121, 486
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 2 cut(s) 158, 266
ScrFI CCNGG 7 cut(s) 78, 153, 215, 235, 277, 400, 545
SduI GDGCHC 1 cut(s) 158
SetI ASST 8 cut(s) 74, 161, 188, 223, 247, 339, 347, 357
SfaNI GCATC 2 cut(s) 273, 424
Sse9I AATT 3 cut(s) 125, 533, 635
SsiI CCGC 3 cut(s) 29, 135, 484
SspMI CTAG 3 cut(s) 315, 459, 563
StyD4I CCNGG 7 cut(s) 76, 151, 213, 233, 275, 398, 543
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 1 cut(s) 188
TasI AATT 3 cut(s) 125, 533, 635
TfiI GAWTC 4 cut(s) 280, 389, 451, 559
Tru1I TTAA 2 cut(s) 528, 639
Tru9I TTAA 2 cut(s) 528, 639
TscAI CASTG 2 cut(s) 183, 411
TseFI GTSAC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 2 cut(s) 183, 411
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 175
XspI CTAG 3 cut(s) 315, 459, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.