Rh5CG164800

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013766
Physical Location & Seq
Reverse (-)
15345658 .. 15350984
5327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG164800.1

Sequence Viewer

Length: 816 bp
ATGACATTTATCGTCGTCCTCGTCAACGACGTCGACTTGGGAGGAGGAGGAGATGTCGCCTTTGGGGAGCATGGCGTCGTCTTGGTCGGGAGCATGGTGGTGGCTGATCATCTTGTTGAGTTTTATGAGTATCGCAAGGGCTTGAATCTTGCTAGAACTTTTCAGTTTCCAACATGGCGGATCTCAGCCCCAGAGGCACAGAGCAAGCAGGAAAACAGCTTTAACAAATTATTGGGCCTGGATGGTATCCTGATTCTAGTAACTGGGAGGCAGAGTGAAGAAAAAGCGTTGGGTGCAAATGGGCTTCTTATAAAGGACATCCAAGAGCAATTTAAGGCGAAGTCAGGGAAATCAGAGTCTGTTTATCATTCTGTGACAGATGTGGCCATATTGAGGCTTGCTACTGCTCAATGCTTACTGGGTTTCCGACATGCGATTCATGTTACTACTCTGATGGGAATGCAGACCCAGAGAGATGCTTTTGTCACATCAATGGCAATGTTTACTTATCTACATAATGCTGCAGATATGAGGCAAAAGAATGTTGATGCTGTGAAGTTAGACTCACTGGATTGTCCTTATATATCAGCTTTACCTAAATATAAGGTATCTCCAGAACAGATTAATAATTTTATTTCGAATTTGAATTTGCTGGATCAGATTGGGAATTTTGAGTTGAACCATGTATTTGCTCATAGCCAAAGCTTGAACAGTGAAGCCATAGTTGCTTTTGTGAAGTCCTTATGTAAAGTTTCCATGTCAGAATTGCAGTCTCCAACAGATCCTCGTGTTTTCAGCCTCATTGAAATAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

5.9

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AatII GACGTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 178
AclWI GGATC 3 cut(s) 188, 663, 776
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 3 cut(s) 640, 646, 667
AcyI GRCGYC 2 cut(s) 30, 75
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 5 cut(s) 145, 646, 679, 709, 806
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 219, 590, 705
AluI AGCT 3 cut(s) 219, 590, 705
Alw26I GTCTC 1 cut(s) 777
AlwI GGATC 3 cut(s) 188, 663, 776
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 2 cut(s) 235, 384
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 3 cut(s) 640, 646, 667
AseI ATTAAT 1 cut(s) 624
AspS9I GGNCC 1 cut(s) 235
AsuII TTCGAA 1 cut(s) 638
BalI TGGCCA 1 cut(s) 386
BauI CACGAG 1 cut(s) 786
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 236, 448
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 777
BfaI CTAG 2 cut(s) 153, 257
BfmI CTRYAG 1 cut(s) 522
BfuI GTATCC 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 2 cut(s) 273, 428
BmsI GCATC 2 cut(s) 466, 538
BmuI ACTGGG 2 cut(s) 273, 428
BpmI CTGGAG 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 638
BsaHI GRCGYC 2 cut(s) 30, 75
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 268, 423, 573
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 247, 318
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 3 cut(s) 268, 423, 573
BseRI GAGGAG 3 cut(s) 57, 60, 63
BseXI GCAGC 1 cut(s) 508
BshFI GGCC 2 cut(s) 237, 386
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 777
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 2 cut(s) 237, 386
Bsp119I TTCGAA 1 cut(s) 638
Bsp143I GATC 4 cut(s) 106, 180, 655, 781
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 237, 386
BspCNI CTCAG 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 3 cut(s) 188, 663, 776
BspT104I TTCGAA 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 3 cut(s) 268, 423, 573
BssMI GATC 4 cut(s) 106, 180, 655, 781
BssNI GRCGYC 2 cut(s) 30, 75
BssSI CACGAG 1 cut(s) 786
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 713
BstACI GRCGYC 2 cut(s) 30, 75
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 206, 399
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 247, 318
BstKTI GATC 4 cut(s) 109, 183, 658, 784
BstMAI GTCTC 1 cut(s) 777
BstMBI GATC 4 cut(s) 106, 180, 655, 781
BstMWI GCNNNNNNNGC 3 cut(s) 194, 293, 725
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 2 cut(s) 180, 781
BstYI RGATCY 2 cut(s) 180, 781
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 237, 386
BtsCI GGATG 2 cut(s) 247, 318
BtsIMutI CAGTG 2 cut(s) 566, 718
Cac8I GCNNGC 2 cut(s) 206, 399
CaiI CAGNNNCTG 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 64
CviAII CATG 7 cut(s) 71, 94, 174, 431, 440, 683, 757
DdeI CTNAG 1 cut(s) 184
DpnI GATC 4 cut(s) 108, 182, 657, 783
DpnII GATC 4 cut(s) 106, 180, 655, 781
EaeI YGGCCR 1 cut(s) 384
EciI GGCGGA 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 7 cut(s) 74, 97, 177, 434, 443, 686, 760
FatI CATG 7 cut(s) 70, 93, 173, 430, 439, 682, 756
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 254, 305
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 2 cut(s) 153, 257
GluI GCNGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 2 cut(s) 237, 386
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 2 cut(s) 30, 75
Hin1II CATG 7 cut(s) 74, 97, 177, 434, 443, 686, 760
HincII GTYRAC 2 cut(s) 25, 34
HindII GTYRAC 2 cut(s) 25, 34
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 5 cut(s) 145, 253, 356, 436, 563
Hpy166II GTNNAC 3 cut(s) 25, 34, 504
Hpy188I TCNGA 5 cut(s) 355, 428, 453, 660, 763
Hpy188III TCNNGA 3 cut(s) 88, 250, 614
Hpy8I GTNNAC 3 cut(s) 25, 34, 504
Hpy99I CGWCG 4 cut(s) 17, 32, 35, 80
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 296, 463, 524, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 293, 725
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 2 cut(s) 30, 75
Hsp92II CATG 7 cut(s) 74, 97, 177, 434, 443, 686, 760
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 106, 180, 655, 781
LmnI GCTCC 2 cut(s) 67, 90
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 466, 538
MaeI CTAG 2 cut(s) 153, 257
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 4 cut(s) 259, 373, 442, 484
MalI GATC 4 cut(s) 108, 182, 657, 783
MboI GATC 4 cut(s) 106, 180, 655, 781
MboII GAAGA 1 cut(s) 290
MflI RGATCY 2 cut(s) 180, 781
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 7 cut(s) 227, 329, 628, 640, 646, 667, 764
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 2 cut(s) 365, 557
MmeI TCCRAC 3 cut(s) 194, 451, 800
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 3 cut(s) 222, 333, 624
MslI CAYNNNNRTG 2 cut(s) 98, 491
Msp20I TGGCCA 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 194, 293, 725
NdeII GATC 4 cut(s) 106, 180, 655, 781
NlaIII CATG 7 cut(s) 74, 97, 177, 434, 443, 686, 760
NmuCI GTSAC 2 cut(s) 373, 484
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 27
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 145, 253, 436
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 364, 557
PpsI GAGTC 2 cut(s) 364, 557
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 180, 781
RseI CAYNNNNRTG 2 cut(s) 98, 491
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 222, 333, 624
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 4 cut(s) 106, 180, 655, 781
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 365, 557
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 33, 221, 592, 598, 609, 707
SfaNI GCATC 2 cut(s) 466, 538
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 638
SmiMI CAYNNNNRTG 2 cut(s) 98, 491
Sse9I AATT 7 cut(s) 227, 329, 628, 640, 646, 667, 764
SsiI CCGC 1 cut(s) 178
SspMI CTAG 2 cut(s) 153, 257
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 33, 638
TasI AATT 7 cut(s) 227, 329, 628, 640, 646, 667, 764
TfiI GAWTC 3 cut(s) 145, 253, 436
Tru1I TTAA 3 cut(s) 222, 333, 624
Tru9I TTAA 3 cut(s) 222, 333, 624
TscAI CASTG 2 cut(s) 573, 718
TseFI GTSAC 2 cut(s) 373, 484
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 373, 484
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 2 cut(s) 573, 718
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 3 cut(s) 640, 646, 667
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 153, 257
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.