Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Forward (+)

76629800 .. 76630415

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG549700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTGTAAAAGTTCTATGCAGACACTCTTGAAAATTCCCGGGTTTAACGACAATGTTGTTACTCATCTTTTTGCTGGTACGGGGGCAGGTTTCTTTGCCGTCTGCATTGGCTCACCAGTTGATGTGGTTAAGTCAAGAATGGTGGGAGATTCTTCTGCTTACAAAAATAGGATCGATTGCTTCGTTAAAACTTTGAAGATTGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

69

Amino Acids

7.43

Weight (kDa)

8.96

Isoelectric Point (pI)

14.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	17 - 66	5.2e-09	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	31, 196
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	83
BcnI	CCSGG	2 cut(s)	39, 40
BfuAI	ACCTGC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	39, 40
BmeT110I	CYCGRG	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	39, 40
BpuMI	CCSGG	2 cut(s)	39, 40
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	37, 38
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	77
Cfr9I	CCCGGG	1 cut(s)	38
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	78
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviJI	RGCY	1 cut(s)	111
CviKI_1	RGCY	1 cut(s)	111
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	38
FaiI	YATR	2 cut(s)	17, 208
HapII	CCGG	1 cut(s)	39
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	28, 135
HpyCH4V	TGCA	2 cut(s)	19, 105
Kzo9I	GATC	1 cut(s)	171
LpnPI	CCDG	4 cut(s)	52, 60, 72, 129
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	144, 208
MluCI	AATT	1 cut(s)	33
MseI	TTAA	3 cut(s)	45, 129, 186
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	39, 40
NciI	CCSGG	2 cut(s)	39, 40
NdeII	GATC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	45, 129, 186
Sau3AI	GATC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	39, 40
SetI	ASST	1 cut(s)	91
SgeI	CNNG	9 cut(s)	40, 50, 51, 52, 87, 93, 99, 128, 147
SmaI	CCCGGG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	37, 38
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	45, 129, 186
Tru9I	TTAA	3 cut(s)	45, 129, 186
TspMI	CCCGGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.