Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Reverse (-)

23776297 .. 23781160

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCAAAGTTTACTTATCTACATAATGCTGCAGATATGAGGCAAAAGAATGTTGACGCTGTGAAGATTGGGAATTTTGAGTTGAACCATGTATTTGCTCATAGCCAAAGCTTGAACAGTGAAGCCATAGTTGCTTTTGTGAAGTCCTTATGTAAAGTTTCCATGTCAGAATTGCAATCTCCAACAGATCCTCGTGTTTTCAGCCTCATTGAAATAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

74

Amino Acids

8.24

Weight (kDa)

6.82

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	85, 115, 212
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	73
BauI	CACGAG	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	182
BssMI	GATC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	119
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	124
CseI	GACGC	1 cut(s)	65
CviAII	CATG	2 cut(s)	89, 163
CviJI	RGCY	4 cut(s)	105, 111, 125, 204
CviKI_1	RGCY	4 cut(s)	105, 111, 125, 204
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
FaeI	CATG	2 cut(s)	92, 166
FaiI	YATR	7 cut(s)	24, 38, 90, 102, 128, 151, 164
FatI	CATG	2 cut(s)	88, 162
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	92, 166
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	12, 55
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	12, 55
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	32, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	92, 166
Kzo9I	GATC	1 cut(s)	187
Lsp1109I	GCAGC	1 cut(s)	16
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	2 cut(s)	73, 170
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	33, 201, 215
MseI	TTAA	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	92, 166
PkrI	GCNGC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	223
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	187
SetI	ASST	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	30
SgeI	CNNG	5 cut(s)	101, 124, 175, 204, 206
Sse9I	AATT	2 cut(s)	73, 170
TaaI	ACNGT	1 cut(s)	119
TasI	AATT	2 cut(s)	73, 170
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.