Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001179.1

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Reverse (-)

166486 .. 168645

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001179.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgctggccgcattcagtgtgactctgaaccaaagtgatgacaggcttgctactgctcaatgcttactgggtttccgacatgcaattcatgttactgctctgatgggaatgcagacccagagagatgcttttgtcacatcaatggcaaagtttacttatctacataatgctgcagatatgaggcaaaagaatgttgatactgtgaaggcaataatagcaatcgccgttgaagatggtaatcatcttcaggaagcatgggagcacatattaacatcccttcccgaattgagcatctgcaactattggaacttaagccaccctcctctctcccctctcaccccagggttcactaacaatattttcactcatctcctagctggtctgggtgctggtttctttgcagtttctattggttctcctgttgatctgctaatgctgtcgacaggctgccagcatgctgccgacatgctgtcgagcccttcacacgacggttctctacaatcgactttcatcagacggcgcctcgatatacgacggtttgccttcatatcagacgacggtttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

188

Amino Acids

20.65

Weight (kDa)

6.09

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	440
AciI	CCGC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	520
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	230
AhdI	GACNNNNNGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw21I	GWGCWC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	170, 447, 458
AspLEI	GCGC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	157, 434, 445
BccI	CCATC	2 cut(s)	97, 227
BceAI	ACGGC	2 cut(s)	209, 533
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	523
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	4 cut(s)	9, 171, 448, 459
BlsI	GCNGC	4 cut(s)	10, 172, 449, 460
Bme1390I	CCNGG	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	115, 300
BmuI	ACTGGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	340, 341
Bse1I	ACTGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	340, 341
BseGI	GGATG	1 cut(s)	272
BseJI	GATNNNNATC	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	157, 434, 445
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	264
BsmI	GAATGC	2 cut(s)	11, 114
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	264, 479
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	519
BspTI	CTTAAG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	340, 341
BssMI	GATC	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	202, 491, 537, 560
BstACI	GRCGYC	1 cut(s)	520
BstAFI	CTTAAG	1 cut(s)	310
BstC8I	GCNNGC	4 cut(s)	6, 48, 452, 456
BstF5I	GGATG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	3 cut(s)	83, 458, 469
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	157, 434, 445
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	6, 48, 452, 456
CfoI	GCGC	1 cut(s)	522
CviAII	CATG	5 cut(s)	80, 89, 255, 455, 466
CviJI	RGCY	6 cut(s)	8, 46, 315, 377, 447, 477
CviKI_1	RGCY	6 cut(s)	8, 46, 315, 377, 447, 477
DinI	GGCGCC	1 cut(s)	521
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DriI	GACNNNNNGTC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	521
EheI	GGCGCC	1 cut(s)	521
FaeI	CATG	5 cut(s)	83, 92, 258, 458, 469
FatI	CATG	5 cut(s)	79, 88, 254, 454, 465
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	4 cut(s)	9, 171, 448, 459
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	9, 171, 448, 459
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	9, 171, 448, 459
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	5 cut(s)	83, 92, 258, 458, 469
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	153, 348, 441
Hpy188I	TCNGA	5 cut(s)	27, 77, 102, 515, 553
Hpy188III	TCNNGA	2 cut(s)	248, 281
Hpy8I	GTNNAC	3 cut(s)	153, 348, 441
Hpy99I	CGWCG	3 cut(s)	491, 537, 560
HpyAV	CCTTC	4 cut(s)	199, 287, 489, 553
HpyCH4III	ACNGT	4 cut(s)	202, 491, 537, 560
HpyCH4V	TGCA	5 cut(s)	83, 112, 173, 297, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	5 cut(s)	83, 92, 258, 458, 469
HspAI	GCGC	1 cut(s)	520
KasI	GGCGCC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	3 cut(s)	157, 434, 445
LweI	GCATC	2 cut(s)	115, 300
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	3 cut(s)	19, 91, 133
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	2 cut(s)	236, 242
MhlI	GDGCHC	2 cut(s)	264, 479
MluCI	AATT	2 cut(s)	84, 284
Mly113I	GGCGCC	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	174, 330, 333, 342, 533
MseI	TTAA	2 cut(s)	269, 311
MslI	CAYNNNNRTG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	11, 114
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	215
NarI	GGCGCC	1 cut(s)	520
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	5 cut(s)	83, 92, 258, 458, 469
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	2 cut(s)	19, 133
NspI	RCATGY	3 cut(s)	83, 458, 469
PaeI	GCATGC	1 cut(s)	458
PasI	CCCWGGG	1 cut(s)	341
PctI	GAATGC	2 cut(s)	11, 114
PkrI	GCNGC	4 cut(s)	10, 172, 449, 460
PleI	GAGTC	1 cut(s)	16
PluTI	GGCGCC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	269, 311
SatI	GCNGC	4 cut(s)	9, 171, 448, 459
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	264, 479
SetI	ASST	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	115, 300
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	84, 284
SsiI	CCGC	1 cut(s)	9
SspDI	GGCGCC	1 cut(s)	519
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	202, 491, 537, 560
TaqI	TCGA	4 cut(s)	440, 473, 503, 525
TasI	AATT	2 cut(s)	84, 284
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	269, 311
Tru9I	TTAA	2 cut(s)	269, 311
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	19, 133
TseI	GCWGC	3 cut(s)	170, 447, 458
Tsp45I	GTSAC	2 cut(s)	19, 133
TspDTI	ATGAA	3 cut(s)	77, 499, 535
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	310
XceI	RCATGY	3 cut(s)	83, 458, 469
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.