Rh7CG188700

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013766
Physical Location & Seq
Reverse (-)
16627779 .. 16655041
27263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG188700.1

Sequence Viewer

Length: 831 bp
ATGTTTAAGTCGAAAATAGGTATGTACATGAGTGGCTCTGAGCTTGATTGTGAAGAAACCAGACCTGTAGAGGCAGTTATGTGGTATATGGAAGTTGATGAATACCCATTTCAGGTTGTACGTATGCTTGAAGCTGATGAATACCCATTTCATGAGAGCAAGCAAGAAAACAGCTTTAACAGATTATTGGGCCTGGATGGTATCCTGAATCTAGTAACTGGGAAGCAGACTGAAGAAAAAGCGTTGGGTGCAAATGGGCTTGTTATAAAGGACATCCAAGAGCAATTTAAGGCGAAGTCAGGGAAATCAGAGACTGTTTATCATTCTGTGACAGATGTGGCCATATTGAGGCTTGCTACTGCTCAATGCTTACTGGGTTTCCGACATGCAATTCATGTTACTGCTCTGATGGGAATGCAGACCCAGATAGATGCTTTTGTCACATCAATGGCAAAGTTTACTTATCTACATAATGCTGCAGATATGAGGCAAAAGAATGTTGATACTGTGAAGGCAATAATAGCAATCGCCGTTGAAGATGGTAATCATCTTCAGGAAGCATGGGAACACATATTAACATGCCTTTCCCGAATTGAGCATCTGCAACTATTGGGGTTCACTAACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCTGGTTTCTTTGCAGTTTCTATTGGTTCTCCTGTTGATGTGGTATGCATTCTGAAACCTATTAGCCTTAATAATAAGTTGGCTGCTTCTATTTATCATTATAAGGAGGTAAATTTGTGTAGCAGTTTAAATTTCAATGACAGTGACTTGCATAAGCATAAGAAAAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

276

Amino Acids

30.99

Weight (kDa)

6.05

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 266, 759
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 769, 787
AcuI CTGAAG 2 cut(s) 252, 536
AfaI GTAC 2 cut(s) 26, 120
AfiI CCNNNNNNNGG 2 cut(s) 112, 348
AgsI TTSAA 3 cut(s) 131, 536, 793
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 4 cut(s) 43, 134, 174, 647
AluI AGCT 4 cut(s) 43, 134, 174, 647
Alw26I GTCTC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 2 cut(s) 190, 339
ApeKI GCWGC 2 cut(s) 476, 740
ApoI RAATTY 2 cut(s) 769, 787
AspS9I GGNCC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 341
BbvI GCAGC 2 cut(s) 463, 727
BccI CCATC 3 cut(s) 191, 403, 533
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 1 cut(s) 194
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 212, 644
BfmI CTRYAG 2 cut(s) 66, 477
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 2 cut(s) 477, 741
BlsI GCNGC 2 cut(s) 478, 742
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 194
BmrI ACTGGG 2 cut(s) 228, 383
BmsI GCATC 2 cut(s) 421, 607
BmuI ACTGGG 2 cut(s) 228, 383
BsaAI YACGTR 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 543
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 348
Bse1I ACTGG 2 cut(s) 223, 378
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 202, 273
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 112, 348
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 223, 378
BseXI GCAGC 2 cut(s) 463, 727
BshFI GGCC 2 cut(s) 192, 341
BslI CCNNNNNNNGG 2 cut(s) 112, 348
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 420, 705
BsnI GGCC 2 cut(s) 192, 341
Bsp1407I TGTACA 1 cut(s) 24
BspANI GGCC 2 cut(s) 192, 341
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 2 cut(s) 223, 378
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 316, 508, 800
BstAUI TGTACA 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 161, 354
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 202, 273
BstMAI GTCTC 1 cut(s) 305
BstMWI GCNNNNNNNGC 2 cut(s) 248, 521
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 389, 582
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 66, 477
BstSNI TACGTA 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 463, 727
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 192, 341
BtsCI GGATG 2 cut(s) 202, 273
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 161, 354
CaiI CAGNNNCTG 1 cut(s) 314
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 25, 119
CviAII CATG 6 cut(s) 28, 152, 386, 395, 561, 579
CviQI GTAC 2 cut(s) 25, 119
DdeI CTNAG 1 cut(s) 39
DraI TTTAAA 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 339
Eco105I TACGTA 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 252, 536
EcoRII CCWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 707
FaeI CATG 6 cut(s) 31, 155, 389, 398, 564, 582
FatI CATG 6 cut(s) 27, 151, 385, 394, 560, 578
Fnu4HI GCNGC 2 cut(s) 477, 741
FokI GGATG 2 cut(s) 209, 260
Fsp4HI GCNGC 2 cut(s) 477, 741
FspBI CTAG 2 cut(s) 212, 644
GluI GCNGC 2 cut(s) 477, 741
HaeIII GGCC 2 cut(s) 192, 341
Hin1II CATG 6 cut(s) 31, 155, 389, 398, 564, 582
HinfI GANTC 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 459, 618
Hpy188I TCNGA 5 cut(s) 40, 310, 383, 408, 711
Hpy188III TCNNGA 4 cut(s) 152, 205, 554, 588
Hpy8I GTNNAC 2 cut(s) 459, 618
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 3 cut(s) 316, 508, 800
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 8 cut(s) 251, 389, 418, 479, 604, 671, 705, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 521
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 6 cut(s) 31, 155, 389, 398, 564, 582
Lsp1109I GCAGC 2 cut(s) 463, 727
LweI GCATC 2 cut(s) 421, 607
MaeI CTAG 2 cut(s) 212, 644
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 5 cut(s) 214, 328, 397, 439, 800
MboII GAAGA 4 cut(s) 65, 245, 542, 548
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 5 cut(s) 284, 390, 591, 769, 787
MluNI TGGCCA 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 4 cut(s) 64, 342, 480, 757
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 707
MscI TGGCCA 1 cut(s) 341
MseI TTAA 6 cut(s) 6, 177, 288, 575, 726, 785
MslI CAYNNNNRTG 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 2 cut(s) 420, 705
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 248, 521
NlaIII CATG 6 cut(s) 31, 155, 389, 398, 564, 582
NmuCI GTSAC 3 cut(s) 328, 439, 800
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 2 cut(s) 389, 582
PagI TCATGA 1 cut(s) 151
PctI GAATGC 2 cut(s) 420, 705
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 478, 742
Ppu21I YACGTR 1 cut(s) 122
PsiI TTATAA 2 cut(s) 266, 759
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 26, 120
RsaNI GTAC 2 cut(s) 25, 119
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 6 cut(s) 6, 177, 288, 575, 726, 785
SatI GCNGC 2 cut(s) 477, 741
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 194
SfaNI GCATC 2 cut(s) 421, 607
SfcI CTRYAG 2 cut(s) 66, 477
SmiMI CAYNNNNRTG 1 cut(s) 446
SnaBI TACGTA 1 cut(s) 122
Sse9I AATT 5 cut(s) 284, 390, 591, 769, 787
SspI AATATT 1 cut(s) 628
SspMI CTAG 2 cut(s) 212, 644
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 316, 508, 800
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 11
TasI AATT 5 cut(s) 284, 390, 591, 769, 787
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 6 cut(s) 6, 177, 288, 575, 726, 785
Tru9I TTAA 6 cut(s) 6, 177, 288, 575, 726, 785
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 3 cut(s) 328, 439, 800
TseI GCWGC 2 cut(s) 476, 740
Tsp45I GTSAC 3 cut(s) 328, 439, 800
TspDTI ATGAA 4 cut(s) 114, 140, 153, 383
TspRI CASTG 1 cut(s) 805
XapI RAATTY 2 cut(s) 769, 787
XceI RCATGY 2 cut(s) 389, 582
XspI CTAG 2 cut(s) 212, 644
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.