Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Forward (+)

21191914 .. 21193391

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGAGGAACACTGCTGAAATTGTTACGAAAGCAGGGTCTGAGGCTATGAAGGAAGGTCAATGCAAAAAATCCCTCTTTGCTTCTATATACAAACCAACAATAGAAGATGGCAGACCAAGAAGTATGGTTATCAAGAAAGTACATACCATGATTCCGCCTCACATTATTGCTGAAGCCATATCAACACTCCATGGTGATGGCCTAGATCTGAGATGGTCAGGCCCCATTACACCAGCTGAAAGGGAATATGTTCAGCAATATGTGTTGGCAAAGTACCCACATTATGCGGGTCTTGTTGAAGGAGAAAAGTTCGACTACTCTAGCATTTGCATCAATGAAGAATCTCCTGATCCGCTCACTCCTGATGATAAGAAAAAGTCACCATGGGGCACCACTTTGAGGGAGTCCCCATCACCATTCTCTGGAAGCAATCTTCCTGACTTGGACAGGACTCAGTTGGAGACATCAAGGTTGCTTGACATCCTCACCAAGAAATCCTCCTTTCCCGGAAGCTTCATCTCAATCCCTGAGGTGCAAGCTCGAAACAAGGTCTTGAAGCACTGTGGATTGCCTGATGATGAGTACCTTGTTCTCTTCACCCCAAACTATAGAGACGCCAAGGTGTTGGTAGCGGAGAGCTATCCATTCTATAGGGGGAACTACTACATGACTGTTATTGGAGGAGATGAAGAAGAAGAAGAAGTCATAAAGGACTTTGCTGGTTACAAGGATTCCAAAGTGATTGTGGCACCAGAGTCTTGGTTGGATTTGAGGATCAAGGGTTCACAACTAAGCCAGTATTTCAGGAAGAAAAGCAAGCACAAGCTGAAAGGGCTCTTTTCTTATCCAGCATTTATAAATGGGATTCATCACTCATTGCATTGGATTTCAGAAGCTCACCGCAACTCATGGCATGTTCTTCTTGATGCAACTGCACTGGTCATTGGGGAGGACCACTTGAATCTCATGCTCCACAGGCCTGACTTTGTTCTGTGTAGTCTGGACAACTCTCATGGCCAGACTTCAAAGATCACCTGCCTTCTGGTCAGGAAGAAATCCTTCGATACTACAATGCCTCCACCACAGATCAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

366

Amino Acids

41.36

Weight (kDa)

6.71

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	860
AarI	CACCTGC	1 cut(s)	1046
Acc36I	ACCTGC	1 cut(s)	1046
AccB1I	GGYRCC	2 cut(s)	392, 751
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	358
AciI	CCGC	5 cut(s)	158, 290, 356, 635, 904
AclWI	GGATC	2 cut(s)	347, 785
AcoI	YGGCCR	1 cut(s)	1018
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	3 cut(s)	144, 278, 587
AfiI	CCNNNNNNNGG	2 cut(s)	402, 425
AgsI	TTSAA	4 cut(s)	302, 559, 964, 1029
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	6 cut(s)	239, 516, 542, 642, 829, 899
AluI	AGCT	6 cut(s)	239, 516, 542, 642, 829, 899
Alw26I	GTCTC	2 cut(s)	458, 609
AlwI	GGATC	2 cut(s)	347, 785
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	4 cut(s)	202, 223, 980, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	2 cut(s)	252, 1061
AspS9I	GGNCC	2 cut(s)	224, 955
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	7 cut(s)	209, 375, 408, 481, 592, 893, 1027
AvaII	GGWCC	1 cut(s)	955
AxyI	CCTNAGG	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	1020
BanI	GGYRCC	2 cut(s)	392, 751
BanII	GRGCYC	1 cut(s)	840
BccI	CCATC	4 cut(s)	104, 194, 210, 421
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	458, 609
BfaI	CTAG	2 cut(s)	206, 324
BfmI	CTRYAG	2 cut(s)	610, 652
BfuAI	ACCTGC	1 cut(s)	1046
BglII	AGATCT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	955
BmgT120I	GGNCC	2 cut(s)	224, 955
BmiI	GGNNCC	3 cut(s)	226, 394, 753
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	342, 919
BpuMI	CCSGG	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	193, 386, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	1063, 1093
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 425
Bse1I	ACTGG	2 cut(s)	799, 945
Bse21I	CCTNAGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	193, 386, 621
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	402, 425
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	4 cut(s)	33, 203, 470, 522
BseNI	ACTGG	2 cut(s)	799, 945
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	4 cut(s)	204, 225, 982, 1020
BshNI	GGYRCC	2 cut(s)	392, 751
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	402, 425
BsmAI	GTCTC	2 cut(s)	458, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	4 cut(s)	204, 225, 982, 1020
Bsp1286I	GDGCHC	2 cut(s)	395, 840
Bsp143I	GATC	5 cut(s)	208, 352, 777, 1032, 1089
Bsp19I	CCATGG	2 cut(s)	193, 386
BspACI	CCGC	5 cut(s)	158, 290, 356, 635, 904
BspANI	GGCC	4 cut(s)	204, 225, 982, 1020
BspCNI	CTCAG	4 cut(s)	34, 204, 469, 523
BspLI	GGNNCC	3 cut(s)	226, 394, 753
BspMI	ACCTGC	1 cut(s)	1046
BspPI	GGATC	2 cut(s)	347, 785
BspT107I	GGYRCC	2 cut(s)	392, 751
BsrBI	CCGCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	799, 945
BssECI	CCNNGG	3 cut(s)	193, 386, 621
BssMI	GATC	5 cut(s)	208, 352, 777, 1032, 1089
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	3 cut(s)	193, 386, 621
Bst4CI	ACNGT	2 cut(s)	566, 676
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	540, 821
BstDEI	CTNAG	5 cut(s)	42, 212, 456, 531, 794
BstDSI	CCRYGG	2 cut(s)	193, 386
BstF5I	GGATG	1 cut(s)	483
BstKTI	GATC	5 cut(s)	211, 355, 780, 1035, 1092
BstMAI	GTCTC	2 cut(s)	458, 609
BstMBI	GATC	5 cut(s)	208, 352, 777, 1032, 1089
BstMWI	GCNNNNNNNGC	2 cut(s)	835, 979
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	2 cut(s)	610, 652
BstSLI	GKGCMC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	3 cut(s)	200, 628, 762
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	4 cut(s)	204, 225, 982, 1020
BtgI	CCRYGG	2 cut(s)	193, 386
BtsCI	GGATG	1 cut(s)	483
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 562, 938
BveI	ACCTGC	1 cut(s)	1046
Cac8I	GCNNGC	2 cut(s)	540, 821
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	224, 955
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	143, 277, 586
CviAII	CATG	8 cut(s)	151, 194, 387, 670, 912, 917, 970, 1016
CviQI	GTAC	3 cut(s)	143, 277, 586
DdeI	CTNAG	5 cut(s)	42, 212, 456, 531, 794
DpnI	GATC	5 cut(s)	210, 354, 779, 1034, 1091
DpnII	GATC	5 cut(s)	208, 352, 777, 1032, 1089
EaeI	YGGCCR	1 cut(s)	1018
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	193, 386, 621
Eco147I	AGGCCT	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	3 cut(s)	193, 386, 621
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	3 cut(s)	193, 386, 621
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	8 cut(s)	154, 197, 390, 673, 915, 920, 973, 1019
FalI	AAGNNNNNCTT	2 cut(s)	1046, 1078
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	8 cut(s)	150, 193, 386, 669, 911, 916, 969, 1015
FauI	CCCGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	840
FspBI	CTAG	2 cut(s)	206, 324
HaeIII	GGCC	4 cut(s)	204, 225, 982, 1020
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	1 cut(s)	626
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	8 cut(s)	154, 197, 390, 673, 915, 920, 973, 1019
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	8 cut(s)	154, 344, 407, 454, 734, 758, 868, 964
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	7 cut(s)	209, 375, 408, 481, 592, 893, 1027
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	3 cut(s)	43, 213, 895
Hpy8I	GTNNAC	1 cut(s)	788
HpyAV	CCTTC	5 cut(s)	46, 50, 296, 1052, 1072
HpyCH4III	ACNGT	2 cut(s)	566, 676
HpyCH4V	TGCA	6 cut(s)	66, 333, 538, 883, 932, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	835, 979
HpyF3I	CTNAG	5 cut(s)	42, 212, 456, 531, 794
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	8 cut(s)	154, 197, 390, 673, 915, 920, 973, 1019
Kzo9I	GATC	5 cut(s)	208, 352, 777, 1032, 1089
LmnI	GCTCC	1 cut(s)	978
LweI	GCATC	2 cut(s)	342, 919
MaeI	CTAG	2 cut(s)	206, 324
MaeIII	GTNAC	3 cut(s)	25, 381, 725
MalI	GATC	5 cut(s)	210, 354, 779, 1034, 1091
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	5 cut(s)	208, 352, 777, 1032, 1089
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	395, 840
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	1020
MlyI	GAGTC	3 cut(s)	416, 448, 767
MmeI	TCCRAC	2 cut(s)	441, 747
Mox20I	TGGCCA	1 cut(s)	1020
MroXI	GAANNNNTTC	2 cut(s)	252, 1061
MscI	TGGCCA	1 cut(s)	1020
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	1020
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	835, 979
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	2 cut(s)	193, 386
NdeII	GATC	5 cut(s)	208, 352, 777, 1032, 1089
NlaIII	CATG	8 cut(s)	154, 197, 390, 673, 915, 920, 973, 1019
NlaIV	GGNNCC	3 cut(s)	226, 394, 753
NmuCI	GTSAC	1 cut(s)	381
NspI	RCATGY	1 cut(s)	920
PaqCI	CACCTGC	1 cut(s)	1046
PceI	AGGCCT	1 cut(s)	982
PdmI	GAANNNNTTC	2 cut(s)	252, 1061
PfeI	GAWTC	5 cut(s)	154, 344, 734, 868, 964
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	508
PleI	GAGTC	3 cut(s)	415, 448, 766
PpsI	GAGTC	3 cut(s)	415, 448, 766
PsiI	TTATAA	1 cut(s)	860
PspN4I	GGNNCC	3 cut(s)	226, 394, 753
PspPI	GGNCC	2 cut(s)	224, 955
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	144, 278, 587
RsaNI	GTAC	3 cut(s)	143, 277, 586
RseI	CAYNNNNRTG	1 cut(s)	198
Sau3AI	GATC	5 cut(s)	208, 352, 777, 1032, 1089
Sau96I	GGNCC	2 cut(s)	224, 955
SchI	GAGTC	3 cut(s)	416, 448, 767
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	395, 840
SfaNI	GCATC	2 cut(s)	342, 919
SfcI	CTRYAG	2 cut(s)	610, 652
SinI	GGWCC	1 cut(s)	955
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	21
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	5 cut(s)	158, 290, 356, 635, 904
SspMI	CTAG	2 cut(s)	206, 324
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	3 cut(s)	193, 386, 621
TaaI	ACNGT	2 cut(s)	566, 676
TaqI	TCGA	3 cut(s)	315, 544, 1065
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	5 cut(s)	154, 344, 734, 868, 964
TscAI	CASTG	3 cut(s)	19, 569, 945
TseFI	GTSAC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	5 cut(s)	65, 354, 508, 705, 860
TspRI	CASTG	3 cut(s)	19, 569, 945
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	955
XceI	RCATGY	1 cut(s)	920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmnI	GAANNNNTTC	2 cut(s)	252, 1061
XspI	CTAG	2 cut(s)	206, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.