Rh6AG311200

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013766
Physical Location & Seq
Reverse (-)
50978526 .. 50985494
6969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG311200.1

Sequence Viewer

Length: 660 bp
ATGAAGTCATTCATGAATATGGTGGTGGTGGCCACAATGGTGGTTGTTCTTATGAACATGGACTCAAATGAGGCTTGCAGAATCTTAAACAACGATGTTCTGCAGAAGGGTGCTACAGTTAAGTTTCCCCAGTTCCCTTTGGTTATTAACCAAATAGTGGAGAGGACTATAGTCCGGTCGCCCAGTACTGGTCCTAATGAGAGGACAAAATTTATCCCTTCATCAACAGGCAATGGACTGCACTATGTTTCGGACGGGGGGATATACATTCCCTCGATTATCCGCCAAAGATTGCAGAAAGGTGGGGTGCCGCCCTCTGATGGTAATAAAGGTCAGAATACAATTGGCCACGCCAATCAATACCGGAGACTTGAAGGCGGCATGGCTGAGCATCTTGCTGAGTTTTATGACTATCGCAAGGGCTTGAATCTTGCTAGAACTTTTCAGTTTCCAACATGGCGGATCTCAGCCCCAGTAACTGGGAGGCAGAGTGAAGAAAAACCGTTGGGTGCAAATGGGCTTCTTATAAAGGACATCCAAGAGCAATTTAAGGCGAAGTCAGGGAAATCAGATGCAGGACCAACCATTTCAAGAAAAGCATTAAATTGTTGCATGTTGAATATGATTAAACAAAAGCTATTATCAATAGATTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

219

Amino Acids

24.3

Weight (kDa)

9.85

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 2 cut(s) 157, 479
AciI CCGC 4 cut(s) 283, 311, 378, 460
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 2 cut(s) 30, 346
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 4 cut(s) 157, 188, 320, 479
AgsI TTSAA 4 cut(s) 374, 427, 591, 619
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 1 cut(s) 637
AluI AGCT 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 2 cut(s) 30, 346
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 191, 578
AvaII GGWCC 2 cut(s) 191, 578
BalI TGGCCA 2 cut(s) 32, 348
BanI GGYRCC 1 cut(s) 307
BccI CCATC 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 3 cut(s) 101, 114, 168
BisI GCNGC 2 cut(s) 311, 379
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 312, 380
BmcAI AGTACT 1 cut(s) 187
Bme18I GGWCC 2 cut(s) 191, 578
BmgT120I GGNCC 2 cut(s) 191, 578
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 4 cut(s) 124, 177, 467, 489
BmsI GCATC 2 cut(s) 400, 562
BmuI ACTGGG 4 cut(s) 124, 177, 467, 489
BoxI GACNNNNGTC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 387
BsaWI WCCGGW 2 cut(s) 174, 363
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 188, 320, 479
Bse1I ACTGG 5 cut(s) 130, 183, 193, 473, 484
Bse3DI GCAATG 1 cut(s) 238
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 4 cut(s) 157, 188, 320, 479
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 378, 390, 480
BseNI ACTGG 5 cut(s) 130, 183, 193, 473, 484
BsgI GTGCAG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 32, 348
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 175, 364
BslI CCNNNNNNNGG 4 cut(s) 157, 188, 320, 479
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 32, 348
Bsp143I GATC 1 cut(s) 462
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 4 cut(s) 283, 311, 378, 460
BspANI GGCC 2 cut(s) 32, 348
BspCNI CTCAG 3 cut(s) 379, 391, 479
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 5 cut(s) 130, 183, 193, 473, 484
BssMI GATC 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 118, 504
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 387, 399, 466
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 1 cut(s) 465
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 1 cut(s) 462
BstMCI CGRYCG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 170
BstSFI CTRYAG 3 cut(s) 101, 114, 168
BstX2I RGATCY 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 2 cut(s) 32, 348
BtsCI GGATG 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 191, 578
Csp6I GTAC 1 cut(s) 186
CviAII CATG 5 cut(s) 13, 58, 382, 456, 613
CviJI RGCY 8 cut(s) 32, 74, 348, 386, 423, 470, 520, 637
CviKI_1 RGCY 8 cut(s) 32, 74, 348, 386, 423, 470, 520, 637
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 387, 399, 466
DpnI GATC 1 cut(s) 464
DpnII GATC 1 cut(s) 462
EaeI YGGCCR 2 cut(s) 30, 346
EciI GGCGGA 2 cut(s) 272, 475
Eco47I GGWCC 2 cut(s) 191, 578
FaeI CATG 5 cut(s) 16, 61, 385, 459, 616
FatI CATG 5 cut(s) 12, 57, 381, 455, 612
Fnu4HI GCNGC 2 cut(s) 311, 379
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 2 cut(s) 311, 379
FspBI CTAG 1 cut(s) 435
GluI GCNGC 2 cut(s) 311, 379
HaeIII GGCC 2 cut(s) 32, 348
HapII CCGG 2 cut(s) 175, 364
Hin1II CATG 5 cut(s) 16, 61, 385, 459, 616
HinfI GANTC 3 cut(s) 62, 81, 427
HpaII CCGG 2 cut(s) 175, 364
Hpy188I TCNGA 4 cut(s) 253, 319, 336, 571
Hpy188III TCNNGA 2 cut(s) 13, 591
HpyAV CCTTC 3 cut(s) 100, 228, 368
HpyCH4III ACNGT 2 cut(s) 118, 504
HpyCH4V TGCA 7 cut(s) 78, 103, 241, 295, 512, 575, 612
HpyF3I CTNAG 3 cut(s) 387, 399, 466
Hsp92II CATG 5 cut(s) 16, 61, 385, 459, 616
Kzo9I GATC 1 cut(s) 462
LweI GCATC 2 cut(s) 400, 562
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 464
MboI GATC 1 cut(s) 462
MboII GAAGA 1 cut(s) 506
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 462
MlsI TGGCCA 2 cut(s) 32, 348
MluCI AATT 4 cut(s) 209, 342, 545, 604
MluNI TGGCCA 2 cut(s) 32, 348
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 6 cut(s) 64, 156, 195, 283, 325, 477
Mox20I TGGCCA 2 cut(s) 32, 348
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 2 cut(s) 32, 348
MseI TTAA 7 cut(s) 86, 120, 147, 549, 602, 627, 653
MslI CAYNNNNRTG 2 cut(s) 17, 38
Msp20I TGGCCA 2 cut(s) 32, 348
MspI CCGG 2 cut(s) 175, 364
MunI CAATTG 1 cut(s) 342
NdeII GATC 1 cut(s) 462
NlaIII CATG 5 cut(s) 16, 61, 385, 459, 616
NlaIV GGNNCC 1 cut(s) 309
NspI RCATGY 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 38
PagI TCATGA 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 81, 427
PflMI CCANNNNNTGG 2 cut(s) 157, 479
PkrI GCNGC 2 cut(s) 312, 380
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 191, 578
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 17, 38
SaqAI TTAA 7 cut(s) 86, 120, 147, 549, 602, 627, 653
SatI GCNGC 2 cut(s) 311, 379
Sau3AI GATC 1 cut(s) 462
Sau96I GGNCC 2 cut(s) 191, 578
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 1 cut(s) 56
SetI ASST 4 cut(s) 304, 334, 639, 659
SfaNI GCATC 2 cut(s) 400, 562
SfcI CTRYAG 3 cut(s) 101, 114, 168
SinI GGWCC 2 cut(s) 191, 578
SmiMI CAYNNNNRTG 2 cut(s) 17, 38
Sse9I AATT 4 cut(s) 209, 342, 545, 604
SsiI CCGC 4 cut(s) 283, 311, 378, 460
SspMI CTAG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 118, 504
TaqI TCGA 1 cut(s) 275
TasI AATT 4 cut(s) 209, 342, 545, 604
TatI WGTACW 1 cut(s) 185
TauI GCSGC 2 cut(s) 313, 381
TfiI GAWTC 2 cut(s) 81, 427
Tru1I TTAA 7 cut(s) 86, 120, 147, 549, 602, 627, 653
Tru9I TTAA 7 cut(s) 86, 120, 147, 549, 602, 627, 653
TspDTI ATGAA 4 cut(s) 17, 29, 68, 210
Van91I CCANNNNNTGG 2 cut(s) 157, 479
VpaK11BI GGWCC 2 cut(s) 191, 578
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.