RchiOBHm_Chr6g0280331

Brefeldin A-inhibited guanine nucleotide-exchange protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
43752168 .. 43755957
3790 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25137

Sequence Viewer

Length: 366 bp
ATGTTGGCCGCATTCAGTGTGACTCTGAACCAAAGTGATGACAGGCTTGCTACTGCTCAATGCTTATTGGGTTTCCGACATACGATTCATGTTACTACTCTGATGGGAATGCAGACCCAGAGAGATGCTTTTGTCACATCAATGGCAATGTTTACTTATCTACATAATGCTGCAGATATGAGGCAAAAGAATGTTGATGCTGTGAAGATTGGGAATTTTGAGTTGAACCATGTATTTGCTCATAGCCAAAGCTTGAACAGTGAAGCCATAGTTGCTTTTGTGAAGTCCTTATGTAAAGTTTCCATGTCAGAATTGCAGTCTCCAACAGATCCTCGTGTTTTCAGCCTCATTGAAATAGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

6.49

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 3 cut(s) 226, 256, 353
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 214
BauI CACGAG 1 cut(s) 333
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 9, 171
BlsI GCNGC 2 cut(s) 10, 172
BmsI GCATC 2 cut(s) 115, 187
Bse3DI GCAATG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 324
BsmI GAATGC 2 cut(s) 11, 114
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 153
BssMI GATC 1 cut(s) 328
BssSI CACGAG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 1 cut(s) 8
BtsIMutI CAGTG 2 cut(s) 22, 265
Cac8I GCNNGC 1 cut(s) 48
CviAII CATG 3 cut(s) 89, 230, 304
CviJI RGCY 6 cut(s) 8, 46, 246, 252, 266, 345
CviKI_1 RGCY 6 cut(s) 8, 46, 246, 252, 266, 345
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 6
FaeI CATG 3 cut(s) 92, 233, 307
FaiI YATR 9 cut(s) 81, 90, 165, 179, 231, 243, 269, 292, 305
FatI CATG 3 cut(s) 88, 229, 303
Fnu4HI GCNGC 2 cut(s) 9, 171
Fsp4HI GCNGC 2 cut(s) 9, 171
GluI GCNGC 2 cut(s) 9, 171
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 3 cut(s) 92, 233, 307
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 2 cut(s) 22, 85
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 4 cut(s) 27, 77, 102, 310
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 112, 173, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
Hsp92II CATG 3 cut(s) 92, 233, 307
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 2 cut(s) 28, 131
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 115, 187
MaeIII GTNAC 3 cut(s) 19, 91, 133
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 217
MflI RGATCY 1 cut(s) 328
MluCI AATT 2 cut(s) 214, 311
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 2 cut(s) 100, 347
MnlI CCTC 3 cut(s) 174, 342, 356
MseI TTAA 1 cut(s) 364
MslI CAYNNNNRTG 1 cut(s) 140
Mva1269I GAATGC 2 cut(s) 11, 114
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 1 cut(s) 328
NlaIII CATG 3 cut(s) 92, 233, 307
NmuCI GTSAC 2 cut(s) 19, 133
PctI GAATGC 2 cut(s) 11, 114
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 10, 172
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 2 cut(s) 9, 171
Sau3AI GATC 1 cut(s) 328
SchI GAGTC 1 cut(s) 16
SetI ASST 1 cut(s) 254
SfaNI GCATC 2 cut(s) 115, 187
SfcI CTRYAG 1 cut(s) 171
SgeI CNNG 9 cut(s) 55, 59, 101, 130, 242, 265, 316, 345, 347
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 2 cut(s) 214, 311
SsiI CCGC 1 cut(s) 9
TaaI ACNGT 1 cut(s) 260
TasI AATT 2 cut(s) 214, 311
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 2 cut(s) 22, 265
TseFI GTSAC 2 cut(s) 19, 133
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 2 cut(s) 19, 133
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 2 cut(s) 22, 265
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.