Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Reverse (-)

26061405 .. 26078983

Gene Structure 17579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGATGGTATACAATGGTACATGCTGGTGGCTCTCTTTTCAAAACTTGGGATTACTTGAAACAAAATGGGCTGCAAAGTTTATTGACATATGGCCAAGACCTACAGTTATGGCAAATTTTGAGGCTGCACTTCAGCTGCCTTTACCTGAAAAAAAGGTTGAAGGACCAATATCTCCGGCTGCGTATCGGCCTGTCTACAAGAGTTGCCCAGCCCATAGCTCCCATCTTTTATTTCATCTCTTGTTATGTGTGTAAGAGTTTCCAACATGGTGGACCTCAGCCCCAGTTCTGTACCATTAAGTTGGACACCGCTACAGTGCTAGAGGTCTCTCCCTCAAAGTTTACTAGCCTGGAATTAAGGCCACATGCTATTGAGAGTTGTTATCTGTCAAAATATCAGGTTTGGGAATATCTAGTGAAATGTTGCCTAAAGAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009918 GO:0010817 GO:0012505 GO:0016020 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016627 GO:0031984 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

147

Amino Acids

17.27

Weight (kDa)

9.38

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	11, 197
AciI	CCGC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	21, 295
AgsI	TTSAA	3 cut(s)	43, 61, 163
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	2 cut(s)	138, 221
AluI	AGCT	2 cut(s)	138, 221
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	3 cut(s)	94, 190, 362
ApeKI	GCWGC	4 cut(s)	73, 127, 138, 181
ApoI	RAATTY	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	166, 275
AvaII	GGWCC	2 cut(s)	166, 275
BalI	TGGCCA	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	60, 114, 125, 168
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	323, 348, 416
BfmI	CTRYAG	2 cut(s)	104, 315
BisI	GCNGC	4 cut(s)	74, 128, 139, 182
BlsI	GCNGC	4 cut(s)	75, 129, 140, 183
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	166, 275
BmgT120I	GGNCC	2 cut(s)	166, 275
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	4 cut(s)	60, 114, 125, 168
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	96, 192, 364
BsiSI	CCGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	96, 192, 364
Bso31I	GGTCTC	1 cut(s)	334
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	3 cut(s)	96, 192, 364
BspCNI	CTCAG	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	286
BssNAI	GTATAC	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	108, 319
BstDEI	CTNAG	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	2 cut(s)	26, 371
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	104, 315
BstV1I	GCAGC	4 cut(s)	60, 114, 125, 168
BstXI	CCANNNNNNTGG	2 cut(s)	272, 304
BstZ17I	GTATAC	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	96, 192, 364
BtsIMutI	CAGTG	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	166, 275
Csp6I	GTAC	2 cut(s)	20, 294
CviAII	CATG	3 cut(s)	23, 269, 368
CviQI	GTAC	2 cut(s)	20, 294
DdeI	CTNAG	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	166, 275
Eco57I	CTGAAG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	26, 272, 371
FaiI	YATR	9 cut(s)	12, 24, 91, 93, 112, 218, 249, 270, 369
FatI	CATG	3 cut(s)	22, 268, 367
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	2 cut(s)	11, 197
Fnu4HI	GCNGC	4 cut(s)	74, 128, 139, 182
Fsp4HI	GCNGC	4 cut(s)	74, 128, 139, 182
FspBI	CTAG	3 cut(s)	323, 348, 416
GluI	GCNGC	4 cut(s)	74, 128, 139, 182
GsaI	CCCAGC	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	96, 192, 364
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	3 cut(s)	26, 272, 371
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	12, 198, 275, 345
Hpy8I	GTNNAC	4 cut(s)	12, 198, 275, 345
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	108, 319
HpyCH4V	TGCA	2 cut(s)	76, 130
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	26, 272, 371
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	12, 161, 191, 206, 224, 299, 338, 365, 386
Lsp1109I	GCAGC	4 cut(s)	60, 114, 125, 168
MaeI	CTAG	3 cut(s)	323, 348, 416
MaeIII	GTNAC	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	117, 356
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	285, 289
MnlI	CCTC	4 cut(s)	117, 288, 319, 346
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	2 cut(s)	300, 359
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
NdeI	CATATG	1 cut(s)	91
NlaIII	CATG	3 cut(s)	26, 272, 371
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	2 cut(s)	26, 371
PkrI	GCNGC	4 cut(s)	75, 129, 140, 183
Psp6I	CCWGG	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	166, 275
PvuII	CAGCTG	1 cut(s)	138
RsaI	GTAC	2 cut(s)	21, 295
RsaNI	GTAC	2 cut(s)	20, 294
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	300, 359
SatI	GCNGC	4 cut(s)	74, 128, 139, 182
Sau96I	GGNCC	2 cut(s)	166, 275
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	8 cut(s)	105, 140, 150, 161, 223, 280, 330, 405
SfcI	CTRYAG	2 cut(s)	104, 315
SinI	GGWCC	2 cut(s)	166, 275
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	117, 356
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	3 cut(s)	323, 348, 416
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	108, 319
TasI	AATT	2 cut(s)	117, 356
Tru1I	TTAA	2 cut(s)	300, 359
Tru9I	TTAA	2 cut(s)	300, 359
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	4 cut(s)	73, 127, 138, 181
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	166, 275
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	2 cut(s)	26, 371
XmiI	GTMKAC	2 cut(s)	11, 197
XspI	CTAG	3 cut(s)	323, 348, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.