Rh5CG119800

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013766
Physical Location & Seq
Forward (+)
9920474 .. 9922820
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG119800.1

Sequence Viewer

Length: 267 bp
ATGGAAGATCTCTACTCTTGTCGAACCCGATTCAACGTCCGGGCTGAGCATCTTGCCGAGTTTTATGAGTATGGAAAGGGCTTGAATCTTGCTAGAACTTTTCAATTTCCAACATGGCGGATCTCAGCCCCAGGTGTGAGATCTTATTCTTGCAGACGTTCTTGTGCACTGCCTTCATTGCTTGTTTCACTGAGGTGCTCTAGCTATCATGCCTATTTCACTATAGTGAGGCAGGAGCTCTATGGACTGGGGTGGGACCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

88

Amino Acids

10.34

Weight (kDa)

9.07

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 128
AgsI TTSAA 3 cut(s) 34, 85, 104
AjnI CCWGG 1 cut(s) 130
AleI CACNNNNGTG 2 cut(s) 193, 224
AluBI AGCT 2 cut(s) 204, 238
AluI AGCT 2 cut(s) 204, 238
Alw21I GWGCWC 3 cut(s) 169, 200, 240
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 3 cut(s) 169, 200, 240
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 93, 201
BfmI CTRYAG 1 cut(s) 222
BglII AGATCT 2 cut(s) 7, 140
BlpI GCTNAGC 1 cut(s) 45
Bme1390I CCNGG 2 cut(s) 41, 132
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 41, 132
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 3 cut(s) 36, 138, 182
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 169
BsiHKAI GWGCWC 3 cut(s) 169, 200, 240
BsiSI CCGG 1 cut(s) 40
Bsp1286I GDGCHC 3 cut(s) 169, 200, 240
Bsp143I GATC 3 cut(s) 7, 120, 140
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 1 cut(s) 118
BspCNI CTCAG 3 cut(s) 37, 137, 183
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 7, 120, 140
Bst2UI CCWGG 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 45, 124, 191
BstKTI GATC 3 cut(s) 10, 123, 143
BstMBI GATC 3 cut(s) 7, 120, 140
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 39, 130
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 169
BstX2I RGATCY 3 cut(s) 7, 120, 140
BstYI RGATCY 3 cut(s) 7, 120, 140
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 167, 188
Cfr13I GGNCC 1 cut(s) 256
CviAII CATG 2 cut(s) 114, 209
CviJI RGCY 5 cut(s) 44, 81, 128, 204, 238
CviKI_1 RGCY 5 cut(s) 44, 81, 128, 204, 238
DdeI CTNAG 3 cut(s) 45, 124, 191
DpnI GATC 3 cut(s) 9, 122, 142
DpnII GATC 3 cut(s) 7, 120, 140
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 117, 212
FaiI YATR 6 cut(s) 66, 72, 115, 210, 224, 243
FatI CATG 2 cut(s) 113, 208
FriOI GRGCYC 1 cut(s) 240
FspBI CTAG 2 cut(s) 93, 201
HapII CCGG 1 cut(s) 40
Hin1II CATG 2 cut(s) 117, 212
HinfI GANTC 2 cut(s) 30, 85
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 36, 157
HpyCH4V TGCA 2 cut(s) 153, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 45, 124, 191
HpySE526I ACGT 2 cut(s) 36, 157
Hsp92II CATG 2 cut(s) 117, 212
Kzo9I GATC 3 cut(s) 7, 120, 140
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 53, 117, 144, 218, 233
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 93, 201
MaeII ACGT 2 cut(s) 36, 157
MalI GATC 3 cut(s) 9, 122, 142
MboI GATC 3 cut(s) 7, 120, 140
MboII GAAGA 1 cut(s) 17
MflI RGATCY 3 cut(s) 7, 120, 140
MhlI GDGCHC 3 cut(s) 169, 200, 240
MluCI AATT 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 2 cut(s) 186, 222
MslI CAYNNNNRTG 2 cut(s) 193, 224
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 41, 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 41
NdeII GATC 3 cut(s) 7, 120, 140
NlaIII CATG 2 cut(s) 117, 212
NlaIV GGNNCC 1 cut(s) 257
NmeAIII GCCGAG 1 cut(s) 82
OliI CACNNNNGTG 2 cut(s) 193, 224
PfeI GAWTC 2 cut(s) 30, 85
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 3 cut(s) 7, 120, 140
RseI CAYNNNNRTG 2 cut(s) 193, 224
SacI GAGCTC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 7, 120, 140
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 41, 132
SduI GDGCHC 3 cut(s) 169, 200, 240
SetI ASST 6 cut(s) 39, 136, 160, 197, 206, 240
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 193, 224
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 118
SspMI CTAG 2 cut(s) 93, 201
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 39, 130
TaiI ACGT 2 cut(s) 39, 160
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 104
TfiI GAWTC 2 cut(s) 30, 85
TscAI CASTG 2 cut(s) 174, 195
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 174, 195
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 256
XspI CTAG 2 cut(s) 93, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.