Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013766

Physical Location & Seq

Genomic Coordinates Reverse (-)

22850232 .. 22852159

Gene Structure 1928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGAATCTCAGCCCTATGTGTGAGATCTCATTCTTGCAGACGTTCTTGTGCATTGCCTTCGCTGCTTGTTTCACTGAGTTCTATACCATTAAGTTGGACACCGCTACAGTTGGTGCACCTAAGTATAGGGGCTTATTGGGTACTATGGCTACCATTGCTAGAGAAGAAGGTTTAGCAGCACTTTGGAATGGTATAATTCTAGGGTTACAACGACAATGCATCTATATATGGAGGCTTAAGAATTGGACAGTTTTGAAAATTCCAAGGTTCACTGACAATATTTTCACTCATCTCCTAGCTGGTCTGGGTGCTGGTTTCTTTGCAGTTTCTATTGGCTATCCTGTTGATGTGGTATGCATTCTGAAACCTATTAGCCTTAATAATAAGTTTGCTGCTTCTATTTATCATTATAAGGAGGTAAATTTGTGTAGCAGTTTAAATTTCAATGATAGTGACTTGCATACGCATACAAAAACATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

8.54

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014261 RchiOBHm_Chr5g0020911 RchiOBHm_Chr6g0266461 RchiOBHm_Chr6g0280331
rosa_multiflora	Rmu_sc0001179.1_g000036
rosa_roxburghii	Rroxscaffold_1G00019480 Rroxscaffold_5G00370150
rosa_rugosa	Rorug07G0231500
rosa_samantha	Rh1AG137500 Rh2CG563900 Rh5BG312300 Rh5CG119800 Rh5CG164800 Rh5CG549700 Rh5DG323000 Rh6AG311200 Rh7CG188700
rosa_wichuraiana	Rw4G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AciI	CCGC	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	261, 424, 442
AfaI	GTAC	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	259, 448
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	117
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	65, 179, 395
ApoI	RAATTY	3 cut(s)	261, 424, 442
BaeGI	GKGCMC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	52, 191, 382
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BfaI	CTAG	3 cut(s)	162, 203, 299
BfmI	CTRYAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	3 cut(s)	66, 180, 396
BlsI	GCNGC	3 cut(s)	67, 181, 397
BmsI	GCATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	266
Bse3DI	GCAATG	2 cut(s)	54, 156
BseDI	CCNNGG	1 cut(s)	266
BseMI	GCAATG	2 cut(s)	54, 156
BseMII	CTCAG	2 cut(s)	25, 69
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	52, 191, 382
BsiHKAI	GWGCWC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	24, 70
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	54, 156
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	112, 253
BstAFI	CTTAAG	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	11, 78, 123
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 158
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	52, 191, 382
BstX2I	RGATCY	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	75, 273
Csp6I	GTAC	1 cut(s)	144
CviJI	RGCY	7 cut(s)	15, 135, 152, 238, 302, 339, 378
CviKI_1	RGCY	7 cut(s)	15, 135, 152, 238, 302, 339, 378
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	3 cut(s)	11, 78, 123
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DraI	TTTAAA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	266
EcoT22I	ATGCAT	2 cut(s)	224, 362
ErhI	CCWWGG	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	66, 180, 396
Fsp4HI	GCNGC	3 cut(s)	66, 180, 396
FspBI	CTAG	3 cut(s)	162, 203, 299
GluI	GCNGC	3 cut(s)	66, 180, 396
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	119, 273
Hpy188I	TCNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	119, 273
HpyAV	CCTTC	2 cut(s)	70, 164
HpyCH4III	ACNGT	2 cut(s)	112, 253
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	40, 54, 119, 222, 326, 360, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 158
HpyF3I	CTNAG	3 cut(s)	11, 78, 123
HpySE526I	ACGT	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	288, 293, 300, 357
Lsp1109I	GCAGC	3 cut(s)	52, 191, 382
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	3 cut(s)	162, 203, 299
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	207, 455
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	5 cut(s)	198, 244, 261, 424, 442
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	2 cut(s)	228, 412
Mph1103I	ATGCAT	2 cut(s)	224, 362
MseI	TTAA	4 cut(s)	93, 240, 381, 440
MspCI	CTTAAG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	65, 158
NdeII	GATC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	2 cut(s)	224, 362
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	67, 181, 397
PsiI	TTATAA	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	93, 240, 381, 440
SatI	GCNGC	3 cut(s)	66, 180, 396
Sau3AI	GATC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	7 cut(s)	47, 124, 175, 272, 304, 373, 423
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	198, 244, 261, 424, 442
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	3 cut(s)	162, 203, 299
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	112, 253
TaiI	ACGT	1 cut(s)	47
TasI	AATT	5 cut(s)	198, 244, 261, 424, 442
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	4 cut(s)	93, 240, 381, 440
Tru9I	TTAA	4 cut(s)	93, 240, 381, 440
TscAI	CASTG	2 cut(s)	82, 280
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	3 cut(s)	65, 179, 395
Tsp45I	GTSAC	1 cut(s)	455
TspRI	CASTG	2 cut(s)	82, 280
Vha464I	CTTAAG	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	117
XapI	RAATTY	3 cut(s)	261, 424, 442
XspI	CTAG	3 cut(s)	162, 203, 299
Zsp2I	ATGCAT	2 cut(s)	224, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.