Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g36500 FvH4_4g04180 |
| rosa_chinensis | RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671 |
| rosa_laevigata | RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682 |
| rosa_multiflora | Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032 |
| rosa_roxburghii | Rroxscaffold_4G00304330 Rroxscaffold_5G00339680 |
| rosa_rugosa | Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1 |
| rosa_samantha | Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800 |
| rosa_wichuraiana | Rw1G019920 Rw4G004170 Rw4G004310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1387 |
| AccII | CGCG | 3 cut(s) | 157, 558, 1170 |
| AciI | CCGC | 7 cut(s) | 228, 532, 556, 1168, 1170, 1441, 1478 |
| AclI | AACGTT | 1 cut(s) | 1402 |
| AclWI | GGATC | 2 cut(s) | 62, 514 |
| AcoI | YGGCCR | 2 cut(s) | 225, 1459 |
| AcuI | CTGAAG | 1 cut(s) | 373 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 121, 1387, 1457 |
| AflIII | ACRYGT | 1 cut(s) | 1236 |
| AgsI | TTSAA | 9 cut(s) | 277, 401, 527, 722, 838, 1330, 1501, 1508, 1548 |
| AhlI | ACTAGT | 1 cut(s) | 1097 |
| AjnI | CCWGG | 3 cut(s) | 429, 884, 1461 |
| AluBI | AGCT | 6 cut(s) | 212, 247, 305, 324, 347, 1258 |
| AluI | AGCT | 6 cut(s) | 212, 247, 305, 324, 347, 1258 |
| Alw21I | GWGCWC | 1 cut(s) | 326 |
| Alw26I | GTCTC | 4 cut(s) | 64, 512, 970, 1345 |
| AlwI | GGATC | 2 cut(s) | 62, 514 |
| AoxI | GGCC | 3 cut(s) | 225, 426, 1459 |
| ApeKI | GCWGC | 1 cut(s) | 1139 |
| AseI | ATTAAT | 1 cut(s) | 1446 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1209 |
| AspS9I | GGNCC | 3 cut(s) | 427, 542, 1173 |
| AsuHPI | GGTGA | 2 cut(s) | 1199, 1218 |
| AsuII | TTCGAA | 1 cut(s) | 1033 |
| AvaII | GGWCC | 2 cut(s) | 542, 1173 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 376, 409 |
| BalI | TGGCCA | 1 cut(s) | 1461 |
| BanII | GRGCYC | 1 cut(s) | 326 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 186, 218 |
| BbsI | GAAGAC | 1 cut(s) | 758 |
| Bbv12I | GWGCWC | 1 cut(s) | 326 |
| BbvCI | CCTCAGC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 1151 |
| BccI | CCATC | 4 cut(s) | 745, 1134, 1165, 1389 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 645, 679, 833, 867 |
| BciT130I | CCWGG | 3 cut(s) | 431, 886, 1463 |
| BcoDI | GTCTC | 4 cut(s) | 64, 512, 970, 1345 |
| BcuI | ACTAGT | 1 cut(s) | 1097 |
| BfaI | CTAG | 2 cut(s) | 515, 1098 |
| BfmI | CTRYAG | 2 cut(s) | 141, 855 |
| BglII | AGATCT | 1 cut(s) | 901 |
| BisI | GCNGC | 2 cut(s) | 228, 1140 |
| BlsI | GCNGC | 2 cut(s) | 229, 1141 |
| BmcAI | AGTACT | 2 cut(s) | 394, 1102 |
| Bme1390I | CCNGG | 3 cut(s) | 431, 886, 1463 |
| Bme18I | GGWCC | 2 cut(s) | 542, 1173 |
| BmgT120I | GGNCC | 3 cut(s) | 427, 542, 1173 |
| BmiI | GGNNCC | 3 cut(s) | 376, 1174, 1175 |
| BmrFI | CCNGG | 3 cut(s) | 431, 886, 1463 |
| BmsI | GCATC | 1 cut(s) | 1232 |
| BoxI | GACNNNNGTC | 1 cut(s) | 143 |
| BpiI | GAAGAC | 1 cut(s) | 758 |
| BpmI | CTGGAG | 1 cut(s) | 692 |
| Bpu10I | CCTNAGC | 2 cut(s) | 134, 294 |
| Bpu14I | TTCGAA | 1 cut(s) | 1033 |
| BpuEI | CTTGAG | 3 cut(s) | 980, 1199, 1396 |
| Bsa29I | ATCGAT | 1 cut(s) | 66 |
| BsaAI | YACGTR | 1 cut(s) | 367 |
| BsaBI | GATNNNNATC | 1 cut(s) | 809 |
| BsaJI | CCNNGG | 6 cut(s) | 115, 429, 690, 884, 1168, 1320 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 121, 1387, 1457 |
| Bse1I | ACTGG | 3 cut(s) | 284, 1001, 1385 |
| Bse3DI | GCAATG | 1 cut(s) | 84 |
| Bse8I | GATNNNNATC | 1 cut(s) | 809 |
| BseBI | CCWGG | 3 cut(s) | 431, 886, 1463 |
| BseCI | ATCGAT | 1 cut(s) | 66 |
| BseDI | CCNNGG | 6 cut(s) | 115, 429, 690, 884, 1168, 1320 |
| BseGI | GGATG | 3 cut(s) | 756, 967, 1381 |
| BseJI | GATNNNNATC | 1 cut(s) | 809 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 121, 1387, 1457 |
| BseMI | GCAATG | 1 cut(s) | 84 |
| BseMII | CTCAG | 5 cut(s) | 125, 762, 783, 1005, 1205 |
| BseNI | ACTGG | 3 cut(s) | 284, 1001, 1385 |
| BseRI | GAGGAG | 2 cut(s) | 456, 1406 |
| BseXI | GCAGC | 1 cut(s) | 1151 |
| Bsh1236I | CGCG | 3 cut(s) | 157, 558, 1170 |
| BshFI | GGCC | 3 cut(s) | 227, 428, 1461 |
| BshVI | ATCGAT | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 1 cut(s) | 326 |
| BslFI | GGGAC | 3 cut(s) | 600, 1159, 1507 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 121, 1387, 1457 |
| BsmAI | GTCTC | 4 cut(s) | 64, 512, 970, 1345 |
| BsmFI | GGGAC | 3 cut(s) | 600, 1159, 1507 |
| BsnI | GGCC | 3 cut(s) | 227, 428, 1461 |
| Bsp119I | TTCGAA | 1 cut(s) | 1033 |
| Bsp1286I | GDGCHC | 1 cut(s) | 326 |
| Bsp1407I | TGTACA | 1 cut(s) | 1347 |
| Bsp143I | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| BspACI | CCGC | 7 cut(s) | 228, 532, 556, 1168, 1170, 1441, 1478 |
| BspANI | GGCC | 3 cut(s) | 227, 428, 1461 |
| BspCNI | CTCAG | 5 cut(s) | 126, 763, 784, 1006, 1206 |
| BspDI | ATCGAT | 1 cut(s) | 66 |
| BspFNI | CGCG | 3 cut(s) | 157, 558, 1170 |
| BspHI | TCATGA | 1 cut(s) | 813 |
| BspLI | GGNNCC | 3 cut(s) | 376, 1174, 1175 |
| BspPI | GGATC | 2 cut(s) | 62, 514 |
| BspT104I | TTCGAA | 1 cut(s) | 1033 |
| BsrDI | GCAATG | 1 cut(s) | 84 |
| BsrGI | TGTACA | 1 cut(s) | 1347 |
| BsrI | ACTGG | 3 cut(s) | 284, 1001, 1385 |
| BssECI | CCNNGG | 6 cut(s) | 115, 429, 690, 884, 1168, 1320 |
| BssMI | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| BssT1I | CCWWGG | 1 cut(s) | 1320 |
| Bst2UI | CCWGG | 3 cut(s) | 431, 886, 1463 |
| Bst4CI | ACNGT | 4 cut(s) | 142, 397, 895, 1187 |
| Bst6I | CTCTTC | 2 cut(s) | 278, 882 |
| BstAUI | TGTACA | 1 cut(s) | 1347 |
| BstBAI | YACGTR | 1 cut(s) | 367 |
| BstBI | TTCGAA | 1 cut(s) | 1033 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 1058 |
| BstDEI | CTNAG | 8 cut(s) | 134, 294, 306, 599, 771, 792, 1014, 1214 |
| BstDSI | CCRYGG | 1 cut(s) | 1168 |
| BstF5I | GGATG | 3 cut(s) | 756, 967, 1381 |
| BstFNI | CGCG | 3 cut(s) | 157, 558, 1170 |
| BstKTI | GATC | 9 cut(s) | 70, 100, 161, 509, 813, 904, 984, 1089, 1473 |
| BstMAI | GTCTC | 4 cut(s) | 64, 512, 970, 1345 |
| BstMBI | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| BstNI | CCWGG | 3 cut(s) | 431, 886, 1463 |
| BstNSI | RCATGY | 3 cut(s) | 48, 1060, 1240 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 143 |
| BstSCI | CCNGG | 3 cut(s) | 429, 884, 1461 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 855 |
| BstUI | CGCG | 3 cut(s) | 157, 558, 1170 |
| BstV1I | GCAGC | 1 cut(s) | 1151 |
| BstV2I | GAAGAC | 1 cut(s) | 758 |
| BstX2I | RGATCY | 1 cut(s) | 901 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1133 |
| BstYI | RGATCY | 1 cut(s) | 901 |
| Bsu15I | ATCGAT | 1 cut(s) | 66 |
| BsuRI | GGCC | 3 cut(s) | 227, 428, 1461 |
| BsuTUI | ATCGAT | 1 cut(s) | 66 |
| BtgI | CCRYGG | 1 cut(s) | 1168 |
| BtsCI | GGATG | 3 cut(s) | 756, 967, 1381 |
| BtsI | GCAGTG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 4 cut(s) | 228, 1008, 1011, 1392 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 1058 |
| CciI | TCATGA | 1 cut(s) | 813 |
| Cfr13I | GGNCC | 3 cut(s) | 427, 542, 1173 |
| Cfr42I | CCGCGG | 1 cut(s) | 1171 |
| ClaI | ATCGAT | 1 cut(s) | 66 |
| CseI | GACGC | 1 cut(s) | 797 |
| DdeI | CTNAG | 8 cut(s) | 134, 294, 306, 599, 771, 792, 1014, 1214 |
| DpnI | GATC | 9 cut(s) | 69, 99, 160, 508, 812, 903, 983, 1088, 1472 |
| DpnII | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| EaeI | YGGCCR | 2 cut(s) | 225, 1459 |
| Eam1104I | CTCTTC | 2 cut(s) | 278, 882 |
| EarI | CTCTTC | 2 cut(s) | 278, 882 |
| Ecl136II | GAGCTC | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 1 cut(s) | 1320 |
| Eco24I | GRGCYC | 1 cut(s) | 326 |
| Eco32I | GATATC | 1 cut(s) | 33 |
| Eco47I | GGWCC | 2 cut(s) | 542, 1173 |
| Eco53kI | GAGCTC | 1 cut(s) | 324 |
| Eco57I | CTGAAG | 1 cut(s) | 373 |
| EcoICRI | GAGCTC | 1 cut(s) | 324 |
| EcoO109I | RGGNCCY | 2 cut(s) | 542, 1173 |
| EcoRII | CCWGG | 3 cut(s) | 429, 884, 1461 |
| EcoRV | GATATC | 1 cut(s) | 33 |
| EcoT14I | CCWWGG | 1 cut(s) | 1320 |
| EcoT38I | GRGCYC | 1 cut(s) | 326 |
| ErhI | CCWWGG | 1 cut(s) | 1320 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1194, 1226 |
| FaqI | GGGAC | 3 cut(s) | 600, 1159, 1507 |
| FauI | CCCGC | 4 cut(s) | 539, 1163, 1448, 1471 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 1140 |
| FokI | GGATG | 3 cut(s) | 763, 974, 1368 |
| FriOI | GRGCYC | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 1140 |
| FspBI | CTAG | 2 cut(s) | 515, 1098 |
| GluI | GCNGC | 2 cut(s) | 228, 1140 |
| GsuI | CTGGAG | 1 cut(s) | 692 |
| HaeIII | GGCC | 3 cut(s) | 227, 428, 1461 |
| HgaI | GACGC | 1 cut(s) | 797 |
| HinfI | GANTC | 2 cut(s) | 552, 1504 |
| HphI | GGTGA | 2 cut(s) | 1199, 1218 |
| Hpy188I | TCNGA | 4 cut(s) | 119, 691, 1215, 1294 |
| Hpy188III | TCNNGA | 9 cut(s) | 95, 101, 206, 671, 770, 814, 1413, 1501, 1596 |
| Hpy99I | CGWCG | 1 cut(s) | 1437 |
| HpyAV | CCTTC | 3 cut(s) | 939, 1067, 1295 |
| HpyCH4III | ACNGT | 4 cut(s) | 142, 397, 895, 1187 |
| HpyCH4IV | ACGT | 5 cut(s) | 176, 366, 1150, 1402, 1575 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 89, 656, 682, 921, 1253 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| HpyF3I | CTNAG | 8 cut(s) | 134, 294, 306, 599, 771, 792, 1014, 1214 |
| HpySE526I | ACGT | 5 cut(s) | 176, 366, 1150, 1402, 1575 |
| KflI | GGGWCCC | 1 cut(s) | 1173 |
| KspI | CCGCGG | 1 cut(s) | 1171 |
| Kzo9I | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| LmnI | GCTCC | 3 cut(s) | 321, 374, 1136 |
| Lsp1109I | GCAGC | 1 cut(s) | 1151 |
| LweI | GCATC | 1 cut(s) | 1232 |
| MaeI | CTAG | 2 cut(s) | 515, 1098 |
| MaeII | ACGT | 5 cut(s) | 176, 366, 1150, 1402, 1575 |
| MaeIII | GTNAC | 4 cut(s) | 442, 602, 1003, 1353 |
| MalI | GATC | 9 cut(s) | 69, 99, 160, 508, 812, 903, 983, 1088, 1472 |
| MboI | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| MboII | GAAGA | 6 cut(s) | 265, 344, 758, 869, 872, 1214 |
| MfeI | CAATTG | 1 cut(s) | 1023 |
| MflI | RGATCY | 1 cut(s) | 901 |
| MhlI | GDGCHC | 1 cut(s) | 326 |
| MlsI | TGGCCA | 1 cut(s) | 1461 |
| MluCI | AATT | 7 cut(s) | 357, 369, 522, 646, 1023, 1363, 1548 |
| MluNI | TGGCCA | 1 cut(s) | 1461 |
| MmeI | TCCRAC | 2 cut(s) | 398, 1114 |
| Mox20I | TGGCCA | 1 cut(s) | 1461 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1209 |
| MscI | TGGCCA | 1 cut(s) | 1461 |
| MseI | TTAA | 3 cut(s) | 591, 1268, 1446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 926 |
| Msp20I | TGGCCA | 1 cut(s) | 1461 |
| MspA1I | CMGCKG | 2 cut(s) | 230, 1170 |
| MspR9I | CCNGG | 3 cut(s) | 431, 886, 1463 |
| MunI | CAATTG | 1 cut(s) | 1023 |
| MvaI | CCWGG | 3 cut(s) | 431, 886, 1463 |
| MvnI | CGCG | 3 cut(s) | 157, 558, 1170 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| NdeII | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| NlaIV | GGNNCC | 3 cut(s) | 376, 1174, 1175 |
| NmuCI | GTSAC | 2 cut(s) | 442, 1003 |
| NspI | RCATGY | 3 cut(s) | 48, 1060, 1240 |
| NspV | TTCGAA | 1 cut(s) | 1033 |
| PaeI | GCATGC | 1 cut(s) | 1060 |
| PagI | TCATGA | 1 cut(s) | 813 |
| PciI | ACATGT | 1 cut(s) | 1236 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1209 |
| PfeI | GAWTC | 2 cut(s) | 552, 1504 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1387 |
| PkrI | GCNGC | 2 cut(s) | 229, 1141 |
| Ppu21I | YACGTR | 1 cut(s) | 367 |
| PpuMI | RGGWCCY | 2 cut(s) | 542, 1173 |
| PscI | ACATGT | 1 cut(s) | 1236 |
| PshAI | GACNNNNGTC | 1 cut(s) | 143 |
| PshBI | ATTAAT | 1 cut(s) | 1446 |
| Psp124BI | GAGCTC | 1 cut(s) | 326 |
| Psp1406I | AACGTT | 1 cut(s) | 1402 |
| Psp5II | RGGWCCY | 2 cut(s) | 542, 1173 |
| Psp6I | CCWGG | 3 cut(s) | 429, 884, 1461 |
| PspGI | CCWGG | 3 cut(s) | 429, 884, 1461 |
| PspN4I | GGNNCC | 3 cut(s) | 376, 1174, 1175 |
| PspPI | GGNCC | 3 cut(s) | 427, 542, 1173 |
| PspPPI | RGGWCCY | 2 cut(s) | 542, 1173 |
| PsuI | RGATCY | 1 cut(s) | 901 |
| RseI | CAYNNNNRTG | 1 cut(s) | 926 |
| SacI | GAGCTC | 1 cut(s) | 326 |
| SacII | CCGCGG | 1 cut(s) | 1171 |
| SaqAI | TTAA | 3 cut(s) | 591, 1268, 1446 |
| SatI | GCNGC | 2 cut(s) | 228, 1140 |
| Sau3AI | GATC | 9 cut(s) | 67, 97, 158, 506, 810, 901, 981, 1086, 1470 |
| Sau96I | GGNCC | 3 cut(s) | 427, 542, 1173 |
| ScaI | AGTACT | 2 cut(s) | 394, 1102 |
| ScrFI | CCNGG | 3 cut(s) | 431, 886, 1463 |
| SduI | GDGCHC | 1 cut(s) | 326 |
| SfaNI | GCATC | 1 cut(s) | 1232 |
| SfcI | CTRYAG | 2 cut(s) | 141, 855 |
| Sfr303I | CCGCGG | 1 cut(s) | 1171 |
| SfuI | TTCGAA | 1 cut(s) | 1033 |
| SgrBI | CCGCGG | 1 cut(s) | 1171 |
| SinI | GGWCC | 2 cut(s) | 542, 1173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 926 |
| SmlI | CTYRAG | 3 cut(s) | 995, 1178, 1411 |
| SmoI | CTYRAG | 3 cut(s) | 995, 1178, 1411 |
| SpeI | ACTAGT | 1 cut(s) | 1097 |
| SphI | GCATGC | 1 cut(s) | 1060 |
| Sse9I | AATT | 7 cut(s) | 357, 369, 522, 646, 1023, 1363, 1548 |
| SsiI | CCGC | 7 cut(s) | 228, 532, 556, 1168, 1170, 1441, 1478 |
| SspI | AATATT | 1 cut(s) | 660 |
| SspMI | CTAG | 2 cut(s) | 515, 1098 |
| SstI | GAGCTC | 1 cut(s) | 326 |
| StyD4I | CCNGG | 3 cut(s) | 429, 884, 1461 |
| StyI | CCWWGG | 1 cut(s) | 1320 |
| TaaI | ACNGT | 4 cut(s) | 142, 397, 895, 1187 |
| TaiI | ACGT | 5 cut(s) | 179, 369, 1153, 1405, 1578 |
| TaqI | TCGA | 4 cut(s) | 66, 405, 951, 1033 |
| TasI | AATT | 7 cut(s) | 357, 369, 522, 646, 1023, 1363, 1548 |
| TatI | WGTACW | 4 cut(s) | 392, 859, 1100, 1347 |
| TauI | GCSGC | 1 cut(s) | 230 |
| TfiI | GAWTC | 2 cut(s) | 552, 1504 |
| Tru1I | TTAA | 3 cut(s) | 591, 1268, 1446 |
| Tru9I | TTAA | 3 cut(s) | 591, 1268, 1446 |
| TscAI | CASTG | 4 cut(s) | 228, 1008, 1018, 1392 |
| TseFI | GTSAC | 2 cut(s) | 442, 1003 |
| TseI | GCWGC | 1 cut(s) | 1139 |
| Tsp45I | GTSAC | 2 cut(s) | 442, 1003 |
| TspDTI | ATGAA | 5 cut(s) | 6, 176, 740, 830, 978 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 4 cut(s) | 228, 1008, 1018, 1392 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1387 |
| VpaK11BI | GGWCC | 2 cut(s) | 542, 1173 |
| VspI | ATTAAT | 1 cut(s) | 1446 |
| XceI | RCATGY | 3 cut(s) | 48, 1060, 1240 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 244, 1384 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1209 |
| XspI | CTAG | 2 cut(s) | 515, 1098 |
| ZrmI | AGTACT | 2 cut(s) | 394, 1102 |