Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Forward (+)

24996607 .. 25009891

Gene Structure 13285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAACGACCTGCAGCCAGCCAATGATGCAGTAGCAATTGGGCTAAGCTTTCACCCAGAAATAGATCCGGACTGCAGTCTTGATGAACAAAATGGAGAAGAACATTCAGCAAAGACAAATTCGGCAGAAATTCTTTCAGTGGTATCTGTAATTGCTTGTGTGATTGCAGTCTTGATGGATCCTTTGTTCTTTTTCATTCCATTCATCGATGAAAAGAGGATGTGTGTTGGAACTGATGAAGCGGTGAGGATTACAGCTCTTATTTCGCGAGCACTTACAGATTTCACTTTCTTAGTGCAAATTATATATCAAATTCGTGGAGCAATGGTGGCGTCCTCCACAGTACAAATAGACGGAAATTCAAAAAGTTTTGGTTGGTTGCAACGGACAAAAGCAATGGCTACAGAATTATCATGTCGCTCTTTCATCACAGACATTTTCGCCATTCTTCCGATTCCACAAGTGCTGATAGTATATTTGTTTTATCAATCTGAACAAGGATTCTCATCTTTGAAAATGGCTATGAATTTCATTCTACTGATCCAATATTTTCCGAGGATGTATCGAGTTTTCCTATCATCTAAGCAGTTGAGAAAGAATAGTGAACTGTGGTTTAAAGGAGTATTCTATTTCTTTATGTACATACTGACGAGTTATGTGCTTGGAGCCTTTTGGTATTTCAGTTCCATTCAAAGACAAACATCATGCTGGCAGCGAGCTATTCACCAACTTTGCCAAGAGGGAATGAACGTTGAAGAATGCACATCTAGATCTACATCTAGATATAGTTATAGTTATAAATGTAAACGCTTCCCGAGGACTGAATTCATGGTGAAGTTCCTTGGTGATTCATGCCCAGTGGATCCACTAAATGCCACGGTATTCAACTTTGGAGTGTTCGGAGATGTCCTGGGCTCCGGTAACATGGGGGATGATGGTTTCCGAAAAAAGTTATTTTACTTCATGTGGTGGGGCCTTAAAAACTTGAGTAATTTTGGTACGAGTCTCAATACAACTGCATACGTGTGGGAAAACTGCTTTGCAATTCTTATTTGTGCTACCGGCTTGATACTGTTTGCTTATCTAATTGGAAATATGCAGGAATGTATGCAATCGGCGGAGGAAAAGAAAGTGGTTAGAGATAAGGTTCAAAAGAAACAACGAGATCTACTAGAGTGGATGAACGCAAATGGTCTCCCTGAGAATTTGGGGAAGGAAATCGTATCAAACATAAAGCAAAAATTGGAAGACGACAAGGATGCTGATCTTGAAAATCTATTCTTACTTCTTCCGTGGAATAGCGTAAAATCACTAAAGCCCTTTTTTTTGCAAGAGAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

447

Amino Acids

51.19

Weight (kDa)

5.83

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	18
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	2 cut(s)	242, 1118
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	6 cut(s)	59, 173, 186, 535, 857, 870
AcsI	RAATTY	7 cut(s)	118, 129, 312, 358, 526, 824, 1204
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	345, 641, 1000
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	7 cut(s)	363, 514, 692, 755, 886, 1151, 1271
AjnI	CCWGG	1 cut(s)	909
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	48, 257, 719
AluI	AGCT	3 cut(s)	48, 257, 719
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	1010, 1199
AlwI	GGATC	6 cut(s)	59, 173, 186, 535, 857, 870
Ama87I	CYCGRG	1 cut(s)	814
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	973
ApeKI	GCWGC	2 cut(s)	13, 712
ApoI	RAATTY	7 cut(s)	118, 129, 312, 358, 526, 824, 1204
AspS9I	GGNCC	1 cut(s)	973
AsuHPI	GGTGA	5 cut(s)	44, 256, 716, 844, 857
AvaI	CYCGRG	1 cut(s)	814
BamHI	GGATCC	2 cut(s)	178, 862
BanII	GRGCYC	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	1254
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	25, 724
BccI	CCATC	2 cut(s)	169, 929
BcgI	CGANNNNNNTGC	4 cut(s)	640, 674, 1241, 1275
BciT130I	CCWGG	1 cut(s)	911
BcoDI	GTCTC	2 cut(s)	1010, 1199
BfaI	CTAG	3 cut(s)	768, 780, 1172
BfmI	CTRYAG	3 cut(s)	11, 73, 402
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	2 cut(s)	770, 1165
BisI	GCNGC	2 cut(s)	14, 713
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	2 cut(s)	15, 714
Bme1390I	CCNGG	1 cut(s)	911
BmeT110I	CYCGRG	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	973
BmiI	GGNNCC	5 cut(s)	180, 667, 864, 916, 974
BmrFI	CCNGG	1 cut(s)	911
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	2 cut(s)	16, 1249
BmuI	ACTGGG	1 cut(s)	851
BoxI	GACNNNNGTC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	1254
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	1006
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	1024
BsaBI	GATNNNNATC	3 cut(s)	505, 775, 1263
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	1199
BsaJI	CCNNGG	6 cut(s)	554, 815, 841, 876, 910, 1292
BsaWI	WCCGGW	2 cut(s)	67, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse118I	RCCGGY	1 cut(s)	1061
Bse1I	ACTGG	1 cut(s)	857
Bse3DI	GCAATG	2 cut(s)	330, 402
Bse8I	GATNNNNATC	3 cut(s)	505, 775, 1263
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	911
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	6 cut(s)	554, 815, 841, 876, 910, 1292
BseGI	GGATG	5 cut(s)	225, 564, 937, 1185, 1264
BseJI	GATNNNNATC	3 cut(s)	505, 775, 1263
BseMI	GCAATG	2 cut(s)	330, 402
BseMII	CTCAG	1 cut(s)	1191
BseNI	ACTGG	1 cut(s)	857
BseXI	GCAGC	2 cut(s)	25, 724
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	975
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	814
BsiSI	CCGG	3 cut(s)	68, 918, 1062
BsmAI	GTCTC	2 cut(s)	1010, 1199
BsmI	GAATGC	2 cut(s)	764, 1342
BsnI	GGCC	1 cut(s)	975
Bso31I	GGTCTC	1 cut(s)	1199
BsoBI	CYCGRG	1 cut(s)	814
Bsp1286I	GDGCHC	2 cut(s)	274, 917
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp68I	TCGCGA	1 cut(s)	268
BspACI	CCGC	2 cut(s)	242, 1118
BspANI	GGCC	1 cut(s)	975
BspCNI	CTCAG	1 cut(s)	1192
BspDI	ATCGAT	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	5 cut(s)	180, 667, 864, 916, 974
BspMAI	CTGCAG	2 cut(s)	15, 77
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	6 cut(s)	59, 173, 186, 535, 857, 870
BspTNI	GGTCTC	1 cut(s)	1199
BsrDI	GCAATG	2 cut(s)	330, 402
BsrFI	RCCGGY	1 cut(s)	1061
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	857
BssAI	RCCGGY	1 cut(s)	1061
BssECI	CCNNGG	6 cut(s)	554, 815, 841, 876, 910, 1292
BssMI	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	4 cut(s)	343, 609, 880, 1074
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	1024
BstC8I	GCNNGC	4 cut(s)	18, 270, 710, 717
BstDEI	CTNAG	4 cut(s)	44, 292, 582, 1200
BstDSI	CCRYGG	2 cut(s)	876, 1292
BstF5I	GGATG	5 cut(s)	225, 564, 937, 1185, 1264
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	7 cut(s)	67, 181, 543, 773, 865, 1168, 1267
BstMAI	GTCTC	2 cut(s)	1010, 1199
BstMBI	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 329
BstNI	CCWGG	1 cut(s)	911
BstPAI	GACNNNNGTC	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	909
BstSFI	CTRYAG	3 cut(s)	11, 73, 402
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	25, 724
BstV2I	GAAGAC	1 cut(s)	1254
BstX2I	RGATCY	5 cut(s)	64, 178, 770, 862, 1165
BstYI	RGATCY	5 cut(s)	64, 178, 770, 862, 1165
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	975
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	876, 1292
BtsCI	GGATG	5 cut(s)	225, 564, 937, 1185, 1264
BtsIMutI	CAGTG	2 cut(s)	144, 864
BtuMI	TCGCGA	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	18, 270, 710, 717
Cfr10I	RCCGGY	1 cut(s)	1061
Cfr13I	GGNCC	1 cut(s)	973
ClaI	ATCGAT	1 cut(s)	207
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	344, 640, 999
CviAII	CATG	6 cut(s)	414, 705, 829, 852, 925, 964
CviQI	GTAC	3 cut(s)	344, 640, 999
DdeI	CTNAG	4 cut(s)	44, 292, 582, 1200
DpnI	GATC	7 cut(s)	66, 180, 542, 772, 864, 1167, 1266
DpnII	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
DraI	TTTAAA	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	1133
Eco130I	CCWWGG	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	917
Eco31I	GGTCTC	1 cut(s)	1199
Eco88I	CYCGRG	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	973
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	909
EcoT14I	CCWWGG	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	917
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	6 cut(s)	417, 708, 832, 855, 928, 967
FatI	CATG	6 cut(s)	413, 704, 828, 851, 924, 963
Fnu4HI	GCNGC	2 cut(s)	14, 713
FokI	GGATG	5 cut(s)	232, 571, 944, 1192, 1271
FriOI	GRGCYC	1 cut(s)	917
Fsp4HI	GCNGC	2 cut(s)	14, 713
FspBI	CTAG	3 cut(s)	768, 780, 1172
GluI	GCNGC	2 cut(s)	14, 713
HaeIII	GGCC	1 cut(s)	975
HapII	CCGG	3 cut(s)	68, 918, 1062
HgaI	GACGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	417, 708, 832, 855, 928, 967
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	454, 501, 848, 1003
HpaII	CCGG	3 cut(s)	68, 918, 1062
HphI	GGTGA	5 cut(s)	44, 256, 716, 844, 857
Hpy166II	GTNNAC	2 cut(s)	605, 806
Hpy188I	TCNGA	5 cut(s)	453, 493, 555, 902, 944
Hpy188III	TCNNGA	8 cut(s)	68, 80, 172, 267, 768, 780, 814, 1268
Hpy8I	GTNNAC	2 cut(s)	605, 806
HpyAV	CCTTC	1 cut(s)	1207
HpyCH4III	ACNGT	4 cut(s)	343, 609, 880, 1074
HpyCH4IV	ACGT	2 cut(s)	750, 1023
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 329
HpyF3I	CTNAG	4 cut(s)	44, 292, 582, 1200
HpySE526I	ACGT	2 cut(s)	750, 1023
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	417, 708, 832, 855, 928, 967
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
LmnI	GCTCC	3 cut(s)	320, 665, 920
Lsp1109I	GCAGC	2 cut(s)	25, 724
LweI	GCATC	2 cut(s)	16, 1249
MaeI	CTAG	3 cut(s)	768, 780, 1172
MaeII	ACGT	2 cut(s)	750, 1023
MaeIII	GTNAC	1 cut(s)	920
MalI	GATC	7 cut(s)	66, 180, 542, 772, 864, 1167, 1266
MboI	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
MboII	GAAGA	5 cut(s)	110, 440, 767, 1259, 1280
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	5 cut(s)	64, 178, 770, 862, 1165
MhlI	GDGCHC	2 cut(s)	274, 917
MlyI	GAGTC	1 cut(s)	1012
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	7 cut(s)	210, 240, 346, 549, 733, 810, 1114
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	2 cut(s)	615, 978
MslI	CAYNNNNRTG	1 cut(s)	1024
MspI	CCGG	3 cut(s)	68, 918, 1062
MspR9I	CCNGG	1 cut(s)	911
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	2 cut(s)	764, 1342
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	26, 329
NdeII	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
NlaIII	CATG	6 cut(s)	417, 708, 832, 855, 928, 967
NlaIV	GGNNCC	5 cut(s)	180, 667, 864, 916, 974
NruI	TCGCGA	1 cut(s)	268
PctI	GAATGC	2 cut(s)	764, 1342
PfeI	GAWTC	3 cut(s)	454, 501, 848
PkrI	GCNGC	2 cut(s)	15, 714
PleI	GAGTC	1 cut(s)	1011
PpsI	GAGTC	1 cut(s)	1011
Ppu21I	YACGTR	1 cut(s)	1024
PshAI	GACNNNNGTC	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	798
Psp1406I	AACGTT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	5 cut(s)	180, 667, 864, 916, 974
PspPI	GGNCC	1 cut(s)	973
PstI	CTGCAG	2 cut(s)	15, 77
PsuI	RGATCY	5 cut(s)	64, 178, 770, 862, 1165
RruI	TCGCGA	1 cut(s)	268
RsaI	GTAC	3 cut(s)	345, 641, 1000
RsaNI	GTAC	3 cut(s)	344, 640, 999
RseI	CAYNNNNRTG	1 cut(s)	1024
SaqAI	TTAA	2 cut(s)	615, 978
SatI	GCNGC	2 cut(s)	14, 713
Sau3AI	GATC	7 cut(s)	64, 178, 540, 770, 862, 1165, 1264
Sau96I	GGNCC	1 cut(s)	973
SchI	GAGTC	1 cut(s)	1012
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	2 cut(s)	274, 917
SetI	ASST	7 cut(s)	12, 50, 259, 721, 753, 1026, 1149
SfaNI	GCATC	2 cut(s)	16, 1249
SfcI	CTRYAG	3 cut(s)	11, 73, 402
SmiMI	CAYNNNNRTG	1 cut(s)	1024
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SsiI	CCGC	2 cut(s)	242, 1118
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	3 cut(s)	768, 780, 1172
StyD4I	CCNGG	1 cut(s)	909
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	4 cut(s)	343, 609, 880, 1074
TaiI	ACGT	2 cut(s)	753, 1026
TaqI	TCGA	2 cut(s)	207, 565
TatI	WGTACW	2 cut(s)	343, 639
TfiI	GAWTC	3 cut(s)	454, 501, 848
Tru1I	TTAA	2 cut(s)	615, 978
Tru9I	TTAA	2 cut(s)	615, 978
TscAI	CASTG	2 cut(s)	144, 864
TseI	GCWGC	2 cut(s)	13, 712
TspGWI	ACGGA	3 cut(s)	369, 400, 1281
TspRI	CASTG	2 cut(s)	144, 864
XapI	RAATTY	7 cut(s)	118, 129, 312, 358, 526, 824, 1204
XbaI	TCTAGA	2 cut(s)	767, 779
XspI	CTAG	3 cut(s)	768, 780, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.