RchiOBHm_Chr4g0394641

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008125
Physical Location & Seq
Forward (+)
10310421 .. 10312867
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36711

Sequence Viewer

Length: 1599 bp
ATGTTGCGTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTATGATTGCTGTCTCAATCGATCCTTTGTTTCTTTACATTGCATTTCTTGATCGTGATAAAGTGTGCCTCGGAACGGACAAAAGGCTGAGGACTGTAGTCCTCATTACGCGATCACTCACAGATTTCACGTTCCTATTTCATATTGTATATCAACTTCGTGAAGCTGTGAAAGCAGTGGCCGCTGTGTCCAAGCCCAAGCTGGTACAGAGAGGCAACTCAAAACTCTTCAACTGGTTTGGACACGCTAAGGCAATAGCTAAGAAGTTGTCATGGAGCTCTTTCCTAACTGACATTTTAGCTGTTCTTCCAATTCCTCACGTAATTGGAGCCTTTTGGTACTTCAGTACTGTTCAAATCGAGGCAGTATGTTGGAACATGGCCCTGGCTGGAAATGTCACTTTCCAATGTGATGACCCTCCTCTATCTCAAATCAATGGAGATTTATCATTTGATTATGGATCATTCCTAGAGACAATTCAAACCCGCTACACAGGACCTACAAGATTCCGCGAAAAGTTATTTTACTTTGTGTGGTGGGGACTTAAAAATCTAAGTAACTATGGTACAGACATTGATACAAGTGAGTTTATTTGGGAAAATTGCTTTGCAATATTCTCGTTTCTGGAGTGTATGCAATCCTCCGAGGAAAAGAAAGTGGCAACTGATAAGGTTCAAATGAAAGAGCAAGAACTACAAGAATGGATGGACAAAAATGGTCTTCCTGAGAAGTTGGGCAAAGACGCTGAGAAGTTGAGGATAGAGATCATGAAAAAGATAACAGAGAACTTGAAAGACGACAAAAATGCTGTAGTACAAAACCTGTTCTCTCTTCTTCCCTGGAATACCGTAAAAGATCTCAAACTTTCTATTTGCATGAGTATGCTAAAGAAAGTACGAAGGCTCGAAAATATGGATGAAAGAGGATTGAGACTGATCTGCCACTATCTCAAGCCAGTGACCTACACTGAGAAAACAATTGCTTTTCGAATGGGAGAACCACTTGATAGCATGCTCTTTATCATGGAAGGTATTATGTTGATCTACCCGACTAGTACTACTGCTACTACTACAACTGACCATCAAGTTGGAGCAGCAAATATACGTTCCCCATCAAAAATCCGCGGGTCCCTTGAGAACGGTGATGTTTATGGAGAAGAACAACTTCTGAGTTGGGCATCACCACCCGACATGTCTATCTCTTATGCAGAGCTTCCTATCTTAACCGAAAATGTAAAATGTCTTTCAGAAGTAGAAGGCTTTGTTCTAACTGCCAAGGACTTGAAAAATGTAGTCTCCTTGTACAAGTTACATGGGAATTACAATAGTTCCAGCCATCCAGTGGAGGAGGTGGAACGTTCTATCTCAAGAGGAACATCAATGGTTCGTCGTACCCGCATTAATCCTACTCATGGCCAGGCACAGATCAGGGCGGGAACGAGGAAACAGATATTCAAGATTCAAATAACTGAAATGTCCCATATTTTGTGTGAGATTGGTTCAATTCTTTGTAGTAATCAAACATTGTACGTTGTGTGTGTGAGAGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

532

Amino Acids

60.65

Weight (kDa)

8.56

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1387
AccII CGCG 3 cut(s) 157, 558, 1170
AciI CCGC 7 cut(s) 228, 532, 556, 1168, 1170, 1441, 1478
AclI AACGTT 1 cut(s) 1402
AclWI GGATC 2 cut(s) 62, 514
AcoI YGGCCR 2 cut(s) 225, 1459
AcuI CTGAAG 1 cut(s) 373
AfiI CCNNNNNNNGG 3 cut(s) 121, 1387, 1457
AflIII ACRYGT 1 cut(s) 1236
AgsI TTSAA 9 cut(s) 277, 401, 527, 722, 838, 1330, 1501, 1508, 1548
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 3 cut(s) 429, 884, 1461
AluBI AGCT 6 cut(s) 212, 247, 305, 324, 347, 1258
AluI AGCT 6 cut(s) 212, 247, 305, 324, 347, 1258
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 4 cut(s) 64, 512, 970, 1345
AlwI GGATC 2 cut(s) 62, 514
AoxI GGCC 3 cut(s) 225, 426, 1459
ApeKI GCWGC 1 cut(s) 1139
AseI ATTAAT 1 cut(s) 1446
Asp700I GAANNNNTTC 1 cut(s) 1209
AspS9I GGNCC 3 cut(s) 427, 542, 1173
AsuHPI GGTGA 2 cut(s) 1199, 1218
AsuII TTCGAA 1 cut(s) 1033
AvaII GGWCC 2 cut(s) 542, 1173
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BalI TGGCCA 1 cut(s) 1461
BanII GRGCYC 1 cut(s) 326
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 1151
BccI CCATC 4 cut(s) 745, 1134, 1165, 1389
BcgI CGANNNNNNTGC 4 cut(s) 645, 679, 833, 867
BciT130I CCWGG 3 cut(s) 431, 886, 1463
BcoDI GTCTC 4 cut(s) 64, 512, 970, 1345
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 2 cut(s) 515, 1098
BfmI CTRYAG 2 cut(s) 141, 855
BglII AGATCT 1 cut(s) 901
BisI GCNGC 2 cut(s) 228, 1140
BlsI GCNGC 2 cut(s) 229, 1141
BmcAI AGTACT 2 cut(s) 394, 1102
Bme1390I CCNGG 3 cut(s) 431, 886, 1463
Bme18I GGWCC 2 cut(s) 542, 1173
BmgT120I GGNCC 3 cut(s) 427, 542, 1173
BmiI GGNNCC 3 cut(s) 376, 1174, 1175
BmrFI CCNGG 3 cut(s) 431, 886, 1463
BmsI GCATC 1 cut(s) 1232
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 2 cut(s) 134, 294
Bpu14I TTCGAA 1 cut(s) 1033
BpuEI CTTGAG 3 cut(s) 980, 1199, 1396
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 809
BsaJI CCNNGG 6 cut(s) 115, 429, 690, 884, 1168, 1320
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 1387, 1457
Bse1I ACTGG 3 cut(s) 284, 1001, 1385
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 809
BseBI CCWGG 3 cut(s) 431, 886, 1463
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 6 cut(s) 115, 429, 690, 884, 1168, 1320
BseGI GGATG 3 cut(s) 756, 967, 1381
BseJI GATNNNNATC 1 cut(s) 809
BseLI CCNNNNNNNGG 3 cut(s) 121, 1387, 1457
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 5 cut(s) 125, 762, 783, 1005, 1205
BseNI ACTGG 3 cut(s) 284, 1001, 1385
BseRI GAGGAG 2 cut(s) 456, 1406
BseXI GCAGC 1 cut(s) 1151
Bsh1236I CGCG 3 cut(s) 157, 558, 1170
BshFI GGCC 3 cut(s) 227, 428, 1461
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 326
BslFI GGGAC 3 cut(s) 600, 1159, 1507
BslI CCNNNNNNNGG 3 cut(s) 121, 1387, 1457
BsmAI GTCTC 4 cut(s) 64, 512, 970, 1345
BsmFI GGGAC 3 cut(s) 600, 1159, 1507
BsnI GGCC 3 cut(s) 227, 428, 1461
Bsp119I TTCGAA 1 cut(s) 1033
Bsp1286I GDGCHC 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 1347
Bsp143I GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
BspACI CCGC 7 cut(s) 228, 532, 556, 1168, 1170, 1441, 1478
BspANI GGCC 3 cut(s) 227, 428, 1461
BspCNI CTCAG 5 cut(s) 126, 763, 784, 1006, 1206
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 3 cut(s) 157, 558, 1170
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 3 cut(s) 376, 1174, 1175
BspPI GGATC 2 cut(s) 62, 514
BspT104I TTCGAA 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 1347
BsrI ACTGG 3 cut(s) 284, 1001, 1385
BssECI CCNNGG 6 cut(s) 115, 429, 690, 884, 1168, 1320
BssMI GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
BssT1I CCWWGG 1 cut(s) 1320
Bst2UI CCWGG 3 cut(s) 431, 886, 1463
Bst4CI ACNGT 4 cut(s) 142, 397, 895, 1187
Bst6I CTCTTC 2 cut(s) 278, 882
BstAUI TGTACA 1 cut(s) 1347
BstBAI YACGTR 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 1033
BstC8I GCNNGC 2 cut(s) 42, 1058
BstDEI CTNAG 8 cut(s) 134, 294, 306, 599, 771, 792, 1014, 1214
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 3 cut(s) 756, 967, 1381
BstFNI CGCG 3 cut(s) 157, 558, 1170
BstKTI GATC 9 cut(s) 70, 100, 161, 509, 813, 904, 984, 1089, 1473
BstMAI GTCTC 4 cut(s) 64, 512, 970, 1345
BstMBI GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
BstMWI GCNNNNNNNGC 2 cut(s) 218, 227
BstNI CCWGG 3 cut(s) 431, 886, 1463
BstNSI RCATGY 3 cut(s) 48, 1060, 1240
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 3 cut(s) 429, 884, 1461
BstSFI CTRYAG 2 cut(s) 141, 855
BstUI CGCG 3 cut(s) 157, 558, 1170
BstV1I GCAGC 1 cut(s) 1151
BstV2I GAAGAC 1 cut(s) 758
BstX2I RGATCY 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 1133
BstYI RGATCY 1 cut(s) 901
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 3 cut(s) 227, 428, 1461
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 1168
BtsCI GGATG 3 cut(s) 756, 967, 1381
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 4 cut(s) 228, 1008, 1011, 1392
Cac8I GCNNGC 2 cut(s) 42, 1058
CciI TCATGA 1 cut(s) 813
Cfr13I GGNCC 3 cut(s) 427, 542, 1173
Cfr42I CCGCGG 1 cut(s) 1171
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 1 cut(s) 797
DdeI CTNAG 8 cut(s) 134, 294, 306, 599, 771, 792, 1014, 1214
DpnI GATC 9 cut(s) 69, 99, 160, 508, 812, 903, 983, 1088, 1472
DpnII GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
EaeI YGGCCR 2 cut(s) 225, 1459
Eam1104I CTCTTC 2 cut(s) 278, 882
EarI CTCTTC 2 cut(s) 278, 882
Ecl136II GAGCTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 1320
Eco24I GRGCYC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 542, 1173
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 2 cut(s) 542, 1173
EcoRII CCWGG 3 cut(s) 429, 884, 1461
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 1320
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 1320
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 3 cut(s) 600, 1159, 1507
FauI CCCGC 4 cut(s) 539, 1163, 1448, 1471
Fnu4HI GCNGC 2 cut(s) 228, 1140
FokI GGATG 3 cut(s) 763, 974, 1368
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 2 cut(s) 228, 1140
FspBI CTAG 2 cut(s) 515, 1098
GluI GCNGC 2 cut(s) 228, 1140
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 3 cut(s) 227, 428, 1461
HgaI GACGC 1 cut(s) 797
HinfI GANTC 2 cut(s) 552, 1504
HphI GGTGA 2 cut(s) 1199, 1218
Hpy188I TCNGA 4 cut(s) 119, 691, 1215, 1294
Hpy188III TCNNGA 9 cut(s) 95, 101, 206, 671, 770, 814, 1413, 1501, 1596
Hpy99I CGWCG 1 cut(s) 1437
HpyAV CCTTC 3 cut(s) 939, 1067, 1295
HpyCH4III ACNGT 4 cut(s) 142, 397, 895, 1187
HpyCH4IV ACGT 5 cut(s) 176, 366, 1150, 1402, 1575
HpyCH4V TGCA 6 cut(s) 44, 89, 656, 682, 921, 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 227
HpyF3I CTNAG 8 cut(s) 134, 294, 306, 599, 771, 792, 1014, 1214
HpySE526I ACGT 5 cut(s) 176, 366, 1150, 1402, 1575
KflI GGGWCCC 1 cut(s) 1173
KspI CCGCGG 1 cut(s) 1171
Kzo9I GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
LmnI GCTCC 3 cut(s) 321, 374, 1136
Lsp1109I GCAGC 1 cut(s) 1151
LweI GCATC 1 cut(s) 1232
MaeI CTAG 2 cut(s) 515, 1098
MaeII ACGT 5 cut(s) 176, 366, 1150, 1402, 1575
MaeIII GTNAC 4 cut(s) 442, 602, 1003, 1353
MalI GATC 9 cut(s) 69, 99, 160, 508, 812, 903, 983, 1088, 1472
MboI GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
MboII GAAGA 6 cut(s) 265, 344, 758, 869, 872, 1214
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 1461
MluCI AATT 7 cut(s) 357, 369, 522, 646, 1023, 1363, 1548
MluNI TGGCCA 1 cut(s) 1461
MmeI TCCRAC 2 cut(s) 398, 1114
Mox20I TGGCCA 1 cut(s) 1461
MroXI GAANNNNTTC 1 cut(s) 1209
MscI TGGCCA 1 cut(s) 1461
MseI TTAA 3 cut(s) 591, 1268, 1446
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 1461
MspA1I CMGCKG 2 cut(s) 230, 1170
MspR9I CCNGG 3 cut(s) 431, 886, 1463
MunI CAATTG 1 cut(s) 1023
MvaI CCWGG 3 cut(s) 431, 886, 1463
MvnI CGCG 3 cut(s) 157, 558, 1170
MwoI GCNNNNNNNGC 2 cut(s) 218, 227
NdeII GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
NlaIV GGNNCC 3 cut(s) 376, 1174, 1175
NmuCI GTSAC 2 cut(s) 442, 1003
NspI RCATGY 3 cut(s) 48, 1060, 1240
NspV TTCGAA 1 cut(s) 1033
PaeI GCATGC 1 cut(s) 1060
PagI TCATGA 1 cut(s) 813
PciI ACATGT 1 cut(s) 1236
PdmI GAANNNNTTC 1 cut(s) 1209
PfeI GAWTC 2 cut(s) 552, 1504
PflMI CCANNNNNTGG 1 cut(s) 1387
PkrI GCNGC 2 cut(s) 229, 1141
Ppu21I YACGTR 1 cut(s) 367
PpuMI RGGWCCY 2 cut(s) 542, 1173
PscI ACATGT 1 cut(s) 1236
PshAI GACNNNNGTC 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 1446
Psp124BI GAGCTC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 1402
Psp5II RGGWCCY 2 cut(s) 542, 1173
Psp6I CCWGG 3 cut(s) 429, 884, 1461
PspGI CCWGG 3 cut(s) 429, 884, 1461
PspN4I GGNNCC 3 cut(s) 376, 1174, 1175
PspPI GGNCC 3 cut(s) 427, 542, 1173
PspPPI RGGWCCY 2 cut(s) 542, 1173
PsuI RGATCY 1 cut(s) 901
RseI CAYNNNNRTG 1 cut(s) 926
SacI GAGCTC 1 cut(s) 326
SacII CCGCGG 1 cut(s) 1171
SaqAI TTAA 3 cut(s) 591, 1268, 1446
SatI GCNGC 2 cut(s) 228, 1140
Sau3AI GATC 9 cut(s) 67, 97, 158, 506, 810, 901, 981, 1086, 1470
Sau96I GGNCC 3 cut(s) 427, 542, 1173
ScaI AGTACT 2 cut(s) 394, 1102
ScrFI CCNGG 3 cut(s) 431, 886, 1463
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 1 cut(s) 1232
SfcI CTRYAG 2 cut(s) 141, 855
Sfr303I CCGCGG 1 cut(s) 1171
SfuI TTCGAA 1 cut(s) 1033
SgrBI CCGCGG 1 cut(s) 1171
SinI GGWCC 2 cut(s) 542, 1173
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 3 cut(s) 995, 1178, 1411
SmoI CTYRAG 3 cut(s) 995, 1178, 1411
SpeI ACTAGT 1 cut(s) 1097
SphI GCATGC 1 cut(s) 1060
Sse9I AATT 7 cut(s) 357, 369, 522, 646, 1023, 1363, 1548
SsiI CCGC 7 cut(s) 228, 532, 556, 1168, 1170, 1441, 1478
SspI AATATT 1 cut(s) 660
SspMI CTAG 2 cut(s) 515, 1098
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 429, 884, 1461
StyI CCWWGG 1 cut(s) 1320
TaaI ACNGT 4 cut(s) 142, 397, 895, 1187
TaiI ACGT 5 cut(s) 179, 369, 1153, 1405, 1578
TaqI TCGA 4 cut(s) 66, 405, 951, 1033
TasI AATT 7 cut(s) 357, 369, 522, 646, 1023, 1363, 1548
TatI WGTACW 4 cut(s) 392, 859, 1100, 1347
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 552, 1504
Tru1I TTAA 3 cut(s) 591, 1268, 1446
Tru9I TTAA 3 cut(s) 591, 1268, 1446
TscAI CASTG 4 cut(s) 228, 1008, 1018, 1392
TseFI GTSAC 2 cut(s) 442, 1003
TseI GCWGC 1 cut(s) 1139
Tsp45I GTSAC 2 cut(s) 442, 1003
TspDTI ATGAA 5 cut(s) 6, 176, 740, 830, 978
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 4 cut(s) 228, 1008, 1018, 1392
Van91I CCANNNNNTGG 1 cut(s) 1387
VpaK11BI GGWCC 2 cut(s) 542, 1173
VspI ATTAAT 1 cut(s) 1446
XceI RCATGY 3 cut(s) 48, 1060, 1240
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 1384
XmnI GAANNNNTTC 1 cut(s) 1209
XspI CTAG 2 cut(s) 515, 1098
ZrmI AGTACT 2 cut(s) 394, 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.