Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Forward (+)

9264441 .. 9270066

Gene Structure 5626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG051800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGCTCTCACCCAGGTCACGCTGTTGAAGATGCCAACGTGCCAGCCGGAAAAGTAAATGAAACAGAGAAGAAATGGGAAACAATGCTGCATTCAGTTTCATTTTGGAATAACATATCTGGGCTTGCATGCATGATTGCTGTCTCAATGGATCCTTTGTTCTTTTACATTGCATTCCTTGATAAAATTAACTTGTGCCTCGGAATGGAGGAAGGGCTGAGTGCTCCTTTCCAATTTTCAAAGAACTGTCAGCGTTTCCAACACTACCGCCGTCTGCACAATAGAAGCAAGTCACTCCCTGAGGGAGTCGCGGCAGCAAGACTAAGGGAGTCAAAGCTGACTCTCAAAGGATTCTCAGACAGTGAGACGAGCAGGTCTGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

128

Amino Acids

14.46

Weight (kDa)

7.77

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	363
AccII	CGCG	1 cut(s)	311
AciI	CCGC	2 cut(s)	268, 311
AclWI	GGATC	2 cut(s)	146, 159
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	29, 240
AjnI	CCWGG	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	6, 337
AluI	AGCT	2 cut(s)	6, 337
Alw21I	GWGCWC	2 cut(s)	8, 226
Alw26I	GTCTC	2 cut(s)	148, 359
AlwI	GGATC	2 cut(s)	146, 159
ApeKI	GCWGC	2 cut(s)	88, 314
AxyI	CCTNAGG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 226
BbvI	GCAGC	2 cut(s)	75, 326
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	148, 359
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	89, 312, 315
BlsI	GCNGC	3 cut(s)	90, 313, 316
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	13, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	13, 199
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	4 cut(s)	209, 291, 369, 369
BseXI	GCAGC	2 cut(s)	75, 326
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	8, 226
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	148, 359
BsmBI	CGTCTC	1 cut(s)	359
BsmI	GAATGC	2 cut(s)	91, 173
Bsp1286I	GDGCHC	2 cut(s)	8, 226
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	2 cut(s)	268, 311
BspCNI	CTCAG	4 cut(s)	210, 292, 368, 370
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	146, 159
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	13, 199
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	248, 362
BstC8I	GCNNGC	3 cut(s)	45, 126, 130
BstDEI	CTNAG	5 cut(s)	218, 300, 323, 355, 378
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	2 cut(s)	148, 359
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	75, 326
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	45, 126, 130
CviAII	CATG	2 cut(s)	129, 133
CviJI	RGCY	5 cut(s)	6, 47, 124, 217, 337
CviKI_1	RGCY	5 cut(s)	6, 47, 124, 217, 337
DdeI	CTNAG	5 cut(s)	218, 300, 323, 355, 378
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	132, 136
FaiI	YATR	3 cut(s)	116, 130, 134
FatI	CATG	2 cut(s)	128, 132
Fnu4HI	GCNGC	3 cut(s)	89, 312, 315
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	89, 312, 315
GluI	GCNGC	3 cut(s)	89, 312, 315
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	132, 136
HinfI	GANTC	4 cut(s)	306, 329, 340, 351
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	203, 358, 379
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	248, 362
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	91, 128, 132, 173, 277
HpyF3I	CTNAG	5 cut(s)	218, 300, 323, 355, 378
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	132, 136
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	27, 57, 61, 105, 312, 358
Lsp1109I	GCAGC	2 cut(s)	75, 326
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	17, 291
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	41, 82
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	8, 226
MluCI	AATT	2 cut(s)	186, 233
MlyI	GAGTC	3 cut(s)	315, 334, 338
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	202, 209, 295
Mph1103I	ATGCAT	1 cut(s)	134
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	91, 173
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	311
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	132, 136
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	17, 291
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PctI	GAATGC	2 cut(s)	91, 173
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	90, 313, 316
PleI	GAGTC	3 cut(s)	314, 334, 337
PpsI	GAGTC	3 cut(s)	314, 334, 337
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	89, 312, 315
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	3 cut(s)	315, 334, 338
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	2 cut(s)	8, 226
SetI	ASST	5 cut(s)	8, 19, 42, 339, 377
SfaNI	GCATC	1 cut(s)	22
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	186, 233
SsiI	CCGC	2 cut(s)	268, 311
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	248, 362
TaiI	ACGT	1 cut(s)	42
TasI	AATT	2 cut(s)	186, 233
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	17, 291
TseI	GCWGC	2 cut(s)	88, 314
Tsp45I	GTSAC	2 cut(s)	17, 291
TspDTI	ATGAA	2 cut(s)	75, 90
TspRI	CASTG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.