RLG00000009680

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
56363269 .. 56366044
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009680

Sequence Viewer

Length: 1473 bp
ATGGATCATGCTGTCGAAAATGCTAACGTGCCAGCAGGAGAAGTAAATGTAACAAAGAAGAAATGGGAAAGAATGCTGCTTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTATGATTGCGGTCTCAATCGATCCTTTGTTTCTTTACATTGCATTTCCTGATCGTGATAAAGTGTGGCTCGGAACGGACAAAAGGCTGAGGACTGTAGTCCTCATTACGCGATCACTCACAGATTTCACGTTCCTATTTCATATTGTATATCAACTTCGTGAAGCTGTGAAAGCAGTGGCCGCTGTGTCCAAGCCCAAGCTGGTACAGAGAGGCAACTCAAAACTCTTCAACTGGTTTGGACATGCACGCAAAGGCAATAGTAACTCGGAACTGGGAGCTGGAAATGTCAGTTTCCAATGTGACGACCCTCCTCTATCTATAACCACTCGGGAGAACATTAATGCCACTTGCATATATGGGACGTCAGATCGGTCATTTGATTATGGGTCATTTCTGGATACAATTCAAGCCGGCTACGCAGGACCTACAAGATTCCGCGAGAAAAAACTTGAAGAAGATTATGTATCTCACATATTCTTGTTCCCATCTGTTAAATTTATTGCAGAGTGTATGCAATCGTTGGAGGAAAAGAAAGTGGCAACTGATAAGGTTCAAATGAAAGAGCAAGAACTACAAGAATGGATGGACAAAAATGATCTCCCTGAGAAGTTGGGCAAAGACGCTGAGAAGTTGAGGATAGAGATCATGAAAAAAATAACAGAAAACTTGAAAGAGGACAAAAATGCTGAAGTACAAAACCTGTTCTCTCTTCTTCCATGGAATACCGTAAAAGATCTCAAACTTTCCATCTGCATGAGTATGCTAAAGAAAGTACGAAGGCTCGAAAATATGGATGAAAGAGGATTGAGACTGATCTGCCACTATCTCAAGCCAGTGACCTACACTGAGAAAACAATTGCTTTTCGAATGGGAGAACCACTTGATAGCATGCTCTTTATCATGGAAGGTATTATGTTGATCTACCCGAGTAGTAGTAGTACTACTACTACTACAACTGATCATCAAGTTGGAAGAGCAAATATACGTTCCCCATCAAAAATCAGCCGGTCCCTGGAGAACGGTGGTGTTTATGGAGAAGAACAACTTCTGAGTTGGGCATCACCACCGGACATGTCCTATATCTCTTATGCAGACCTTCCTATCTTGACCGAAAATGTAAAATGTCTTTCAGAAGTAGAAGGCTTTGTTCTCACTGCCAAGGACTTGAAAAATGTAGTCTCCGTGTACAAGTTACATGGGAATTACAATAGTTCCAGCCATCTAGTGGAGGAGATGGAACGTTCTATCTCAAGAGGAACATCAATGGTTCGTCGTAACCGCATTAATCCTACCCCATGGCCAGGCACAGATCAGGGCGGGAGCGAGGAAACAGATATTCAAGATTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

55.67

Weight (kDa)

6.74

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 1345
AccII CGCG 2 cut(s) 229, 558
AciI CCGC 5 cut(s) 128, 300, 556, 1399, 1437
AclI AACGTT 1 cut(s) 1360
AclWI GGATC 2 cut(s) 12, 134
AcoI YGGCCR 2 cut(s) 297, 1418
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 5 cut(s) 324, 813, 894, 1060, 1307
AfiI CCNNNNNNNGG 3 cut(s) 1132, 1345, 1421
AflIII ACRYGT 1 cut(s) 1191
AgsI TTSAA 8 cut(s) 349, 527, 572, 674, 790, 1288, 1460, 1467
AjnI CCWGG 2 cut(s) 1131, 1420
AluBI AGCT 3 cut(s) 284, 319, 398
AluI AGCT 3 cut(s) 284, 319, 398
Alw26I GTCTC 3 cut(s) 136, 922, 1303
AlwI GGATC 2 cut(s) 12, 134
Ama87I CYCGRG 2 cut(s) 447, 1045
AoxI GGCC 2 cut(s) 297, 1418
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 614
AseI ATTAAT 2 cut(s) 459, 1404
Asp700I GAANNNNTTC 1 cut(s) 1164
AspS9I GGNCC 2 cut(s) 542, 1128
AsuHPI GGTGA 1 cut(s) 1173
AsuII TTCGAA 1 cut(s) 985
AvaI CYCGRG 2 cut(s) 447, 1045
AvaII GGWCC 2 cut(s) 542, 1128
BalI TGGCCA 1 cut(s) 1420
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 63
BccI CCATC 6 cut(s) 613, 697, 875, 1120, 1347, 1348
BciT130I CCWGG 2 cut(s) 1133, 1422
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 3 cut(s) 136, 922, 1303
BfaI CTAG 1 cut(s) 1343
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 511
BglII AGATCT 1 cut(s) 853
BisI GCNGC 2 cut(s) 77, 300
BlsI GCNGC 2 cut(s) 78, 301
BmcAI AGTACT 1 cut(s) 1060
Bme1390I CCNGG 2 cut(s) 1133, 1422
Bme18I GGWCC 2 cut(s) 542, 1128
BmeT110I CYCGRG 2 cut(s) 447, 1045
BmgT120I GGNCC 2 cut(s) 542, 1128
BmiI GGNNCC 1 cut(s) 1130
BmrFI CCNGG 2 cut(s) 1133, 1422
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 1187
BmuI ACTGGG 1 cut(s) 401
BoxI GACNNNNGTC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 1154
Bpu10I CCTNAGC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 985
BpuEI CTTGAG 2 cut(s) 932, 1354
Bsa29I ATCGAT 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 4 cut(s) 836, 1131, 1278, 1415
BsaWI WCCGGW 1 cut(s) 1186
Bsc4I CCNNNNNNNGG 3 cut(s) 1132, 1345, 1421
Bse118I RCCGGY 2 cut(s) 530, 1125
Bse1I ACTGG 3 cut(s) 356, 396, 953
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 761
BseBI CCWGG 2 cut(s) 1133, 1422
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 4 cut(s) 836, 1131, 1278, 1415
BseGI GGATG 2 cut(s) 708, 919
BseJI GATNNNNATC 1 cut(s) 761
BseLI CCNNNNNNNGG 3 cut(s) 1132, 1345, 1421
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 5 cut(s) 197, 714, 735, 957, 1160
BseNI ACTGG 3 cut(s) 356, 396, 953
BseRI GAGGAG 2 cut(s) 420, 1364
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 229, 558
BshFI GGCC 2 cut(s) 299, 1420
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 447, 1045
BsiSI CCGG 3 cut(s) 531, 1126, 1187
BslFI GGGAC 2 cut(s) 493, 1114
BslI CCNNNNNNNGG 3 cut(s) 1132, 1345, 1421
BsmAI GTCTC 3 cut(s) 136, 922, 1303
BsmFI GGGAC 2 cut(s) 493, 1114
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 2 cut(s) 299, 1420
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 2 cut(s) 447, 1045
Bsp119I TTCGAA 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 1305
Bsp19I CCATGG 2 cut(s) 836, 1415
BspACI CCGC 5 cut(s) 128, 300, 556, 1399, 1437
BspANI GGCC 2 cut(s) 299, 1420
BspCNI CTCAG 5 cut(s) 198, 715, 736, 958, 1161
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 2 cut(s) 229, 558
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 1 cut(s) 1130
BspPI GGATC 2 cut(s) 12, 134
BspQI GCTCTTC 1 cut(s) 1087
BspT104I TTCGAA 1 cut(s) 985
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 2 cut(s) 530, 1125
BsrGI TGTACA 1 cut(s) 1305
BsrI ACTGG 3 cut(s) 356, 396, 953
BssAI RCCGGY 2 cut(s) 530, 1125
BssECI CCNNGG 4 cut(s) 836, 1131, 1278, 1415
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 3 cut(s) 836, 1278, 1415
Bst2UI CCWGG 2 cut(s) 1133, 1422
Bst4CI ACNGT 3 cut(s) 214, 847, 1142
Bst6I CTCTTC 3 cut(s) 350, 834, 1087
BstACI GRCGYC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 1305
BstBI TTCGAA 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 33, 114, 367, 532, 1010
BstDEI CTNAG 5 cut(s) 206, 723, 744, 966, 1169
BstDSI CCRYGG 2 cut(s) 836, 1415
BstF5I GGATG 2 cut(s) 708, 919
BstFNI CGCG 2 cut(s) 229, 558
BstMAI GTCTC 3 cut(s) 136, 922, 1303
BstMWI GCNNNNNNNGC 3 cut(s) 290, 299, 536
BstNI CCWGG 2 cut(s) 1133, 1422
BstNSI RCATGY 4 cut(s) 120, 365, 1012, 1195
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 1131, 1420
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 2 cut(s) 229, 558
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 299, 1420
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 2 cut(s) 836, 1415
BtsCI GGATG 2 cut(s) 708, 919
BtsI GCAGTG 2 cut(s) 300, 1272
BtsIMutI CAGTG 4 cut(s) 300, 960, 963, 1272
Cac8I GCNNGC 5 cut(s) 33, 114, 367, 532, 1010
CciI TCATGA 1 cut(s) 765
Cfr10I RCCGGY 2 cut(s) 530, 1125
Cfr13I GGNCC 2 cut(s) 542, 1128
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 749
Csp6I GTAC 5 cut(s) 323, 812, 893, 1059, 1306
CviQI GTAC 5 cut(s) 323, 812, 893, 1059, 1306
DdeI CTNAG 5 cut(s) 206, 723, 744, 966, 1169
EaeI YGGCCR 2 cut(s) 297, 1418
Eam1104I CTCTTC 3 cut(s) 350, 834, 1087
EarI CTCTTC 3 cut(s) 350, 834, 1087
Eco130I CCWWGG 3 cut(s) 836, 1278, 1415
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 542, 1128
Eco57I CTGAAG 1 cut(s) 828
Eco88I CYCGRG 2 cut(s) 447, 1045
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 1131, 1420
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 3 cut(s) 836, 1278, 1415
ErhI CCWWGG 3 cut(s) 836, 1278, 1415
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FaqI GGGAC 2 cut(s) 493, 1114
FauI CCCGC 1 cut(s) 1430
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 2 cut(s) 77, 300
FokI GGATG 2 cut(s) 715, 926
Fsp4HI GCNGC 2 cut(s) 77, 300
FspBI CTAG 1 cut(s) 1343
GluI GCNGC 2 cut(s) 77, 300
GsuI CTGGAG 1 cut(s) 1154
HaeIII GGCC 2 cut(s) 299, 1420
HapII CCGG 3 cut(s) 531, 1126, 1187
HgaI GACGC 1 cut(s) 749
Hin1I GRCGYC 1 cut(s) 482
HinfI GANTC 2 cut(s) 552, 1463
HpaII CCGG 3 cut(s) 531, 1126, 1187
HphI GGTGA 1 cut(s) 1173
Hpy166II GTNNAC 1 cut(s) 1306
Hpy188I TCNGA 5 cut(s) 191, 388, 487, 1170, 1252
Hpy188III TCNNGA 9 cut(s) 167, 173, 278, 449, 515, 766, 1225, 1371, 1460
Hpy8I GTNNAC 1 cut(s) 1306
Hpy99I CGWCG 1 cut(s) 1395
HpyAV CCTTC 4 cut(s) 891, 1019, 1226, 1253
HpyCH4III ACNGT 3 cut(s) 214, 847, 1142
HpyCH4IV ACGT 5 cut(s) 27, 248, 482, 1105, 1360
HpyCH4V TGCA 8 cut(s) 116, 161, 365, 471, 623, 634, 873, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 299, 536
HpyF3I CTNAG 5 cut(s) 206, 723, 744, 966, 1169
HpySE526I ACGT 5 cut(s) 27, 248, 482, 1105, 1360
Hsp92I GRCGYC 1 cut(s) 482
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 1078
LguI GCTCTTC 1 cut(s) 1087
LmnI GCTCC 2 cut(s) 395, 1440
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 1187
MaeI CTAG 1 cut(s) 1343
MaeII ACGT 5 cut(s) 27, 248, 482, 1105, 1360
MaeIII GTNAC 6 cut(s) 49, 380, 419, 955, 1311, 1394
MboII GAAGA 8 cut(s) 70, 337, 584, 587, 821, 824, 1104, 1169
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 1420
MluCI AATT 5 cut(s) 522, 614, 975, 1321, 1468
MluNI TGGCCA 1 cut(s) 1420
MmeI TCCRAC 2 cut(s) 621, 1069
Mox20I TGGCCA 1 cut(s) 1420
MroNI GCCGGC 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 1164
MscI TGGCCA 1 cut(s) 1420
MseI TTAA 3 cut(s) 459, 612, 1404
MslI CAYNNNNRTG 2 cut(s) 872, 878
Msp20I TGGCCA 1 cut(s) 1420
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 531, 1126, 1187
MspR9I CCNGG 2 cut(s) 1133, 1422
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 2 cut(s) 1133, 1422
MvnI CGCG 2 cut(s) 229, 558
MwoI GCNNNNNNNGC 3 cut(s) 290, 299, 536
NaeI GCCGGC 1 cut(s) 532
NcoI CCATGG 2 cut(s) 836, 1415
NgoMIV GCCGGC 1 cut(s) 530
NlaIV GGNNCC 1 cut(s) 1130
NmuCI GTSAC 2 cut(s) 419, 955
NspI RCATGY 4 cut(s) 120, 365, 1012, 1195
NspV TTCGAA 1 cut(s) 985
PaeI GCATGC 1 cut(s) 1012
PagI TCATGA 1 cut(s) 765
PciI ACATGT 1 cut(s) 1191
PciSI GCTCTTC 1 cut(s) 1087
PctI GAATGC 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 1164
PfeI GAWTC 2 cut(s) 552, 1463
PflMI CCANNNNNTGG 1 cut(s) 1345
PkrI GCNGC 2 cut(s) 78, 301
PpuMI RGGWCCY 1 cut(s) 542
PscI ACATGT 1 cut(s) 1191
PshAI GACNNNNGTC 1 cut(s) 215
PshBI ATTAAT 2 cut(s) 459, 1404
Psp1406I AACGTT 1 cut(s) 1360
Psp5II RGGWCCY 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 1131, 1420
PspGI CCWGG 2 cut(s) 1131, 1420
PspN4I GGNNCC 1 cut(s) 1130
PspPI GGNCC 2 cut(s) 542, 1128
PspPPI RGGWCCY 1 cut(s) 542
PsuI RGATCY 1 cut(s) 853
RsaI GTAC 5 cut(s) 324, 813, 894, 1060, 1307
RsaNI GTAC 5 cut(s) 323, 812, 893, 1059, 1306
RseI CAYNNNNRTG 2 cut(s) 872, 878
SapI GCTCTTC 1 cut(s) 1087
SaqAI TTAA 3 cut(s) 459, 612, 1404
SatI GCNGC 2 cut(s) 77, 300
Sau96I GGNCC 2 cut(s) 542, 1128
ScaI AGTACT 1 cut(s) 1060
ScrFI CCNGG 2 cut(s) 1133, 1422
SfaNI GCATC 1 cut(s) 1187
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 985
SinI GGWCC 2 cut(s) 542, 1128
SmiMI CAYNNNNRTG 2 cut(s) 872, 878
SmlI CTYRAG 2 cut(s) 947, 1369
SmoI CTYRAG 2 cut(s) 947, 1369
SphI GCATGC 1 cut(s) 1012
Sse9I AATT 5 cut(s) 522, 614, 975, 1321, 1468
SsiI CCGC 5 cut(s) 128, 300, 556, 1399, 1437
SspMI CTAG 1 cut(s) 1343
StyD4I CCNGG 2 cut(s) 1131, 1420
StyI CCWWGG 3 cut(s) 836, 1278, 1415
TaaI ACNGT 3 cut(s) 214, 847, 1142
TaiI ACGT 5 cut(s) 30, 251, 485, 1108, 1363
TaqI TCGA 4 cut(s) 15, 138, 903, 985
TaqII GACCGA 2 cut(s) 480, 1244
TasI AATT 5 cut(s) 522, 614, 975, 1321, 1468
TatI WGTACW 3 cut(s) 811, 1058, 1305
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 552, 1463
Tru1I TTAA 3 cut(s) 459, 612, 1404
Tru9I TTAA 3 cut(s) 459, 612, 1404
TscAI CASTG 4 cut(s) 300, 960, 970, 1279
TseFI GTSAC 2 cut(s) 419, 955
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 2 cut(s) 419, 955
TspDTI ATGAA 5 cut(s) 78, 248, 692, 782, 930
TspGWI ACGGA 2 cut(s) 209, 1291
TspRI CASTG 4 cut(s) 300, 960, 970, 1279
Van91I CCANNNNNTGG 1 cut(s) 1345
VpaK11BI GGWCC 2 cut(s) 542, 1128
VspI ATTAAT 2 cut(s) 459, 1404
XapI RAATTY 1 cut(s) 614
XceI RCATGY 4 cut(s) 120, 365, 1012, 1195
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 1342
XmnI GAANNNNTTC 1 cut(s) 1164
XspI CTAG 1 cut(s) 1343
ZraI GACGTC 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.