Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Forward (+)

9211363 .. 9224715

Gene Structure 13353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATCACTCAAAGGAGGAGGTGTTCCGCATCGAAATGAGCTCTCACCCAGATATAGTTCACGCTGTCGAAAATGCTAACGCGCCACCCGGAGAAGTAAATGGAACAAAGAAGAAATGGGAAACAATGCTGCTTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTACGATTGCAGTCTCAACGGATCCTTTGTTTTTTTACATTGCATTCTTTGATCGCAAGAAAATGTGCCTCTATATGGACAAAAGGATGAGGAACGCAGTCCTCATTACGCGATCAGTCACAGATATCACGTTCCTATTTCATATTGTATATCAAATTCGTGAAGCTGTGAAAGCAGCGGCCTATGTGTCCAAGGCCAAGCTGGTACAGAGAGGCCACTCAAAACTCTTCAACTGGTTTGGACACGCTAAGGCAATAACTAAGAAGTTGTCATGGAGCTCTGTCCTAACTGACATTCTCGCTGTTCTTCCAATTCCACATATTACTGGTATTGCCAAGCACATAATATATAGCATCGCCTGGGGTCAGGTAACTTGTCCTTCATGCAAAAGGGTGAGCGCTGAAAATGACAAGCAGGAAGGGAAGATATTCAAAGCTGATAATGAAGGTAACAAGCTCAAAGCCAATTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

215

Amino Acids

24.33

Weight (kDa)

9.53

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 283
AciI	CCGC	2 cut(s)	28, 350
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	2 cut(s)	175, 378
AfeI	AGCGCT	1 cut(s)	571
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	403, 604
AjnI	CCWGG	1 cut(s)	530
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	6 cut(s)	42, 338, 373, 450, 608, 628
AluI	AGCT	6 cut(s)	42, 338, 373, 450, 608, 628
Alw21I	GWGCWC	2 cut(s)	44, 452
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	188, 201
Aor51HI	AGCGCT	1 cut(s)	571
AoxI	GGCC	3 cut(s)	351, 366, 385
ApeKI	GCWGC	2 cut(s)	130, 347
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	85, 572
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	38, 577
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	44, 452
Bbv12I	GWGCWC	2 cut(s)	44, 452
BbvI	GCAGC	2 cut(s)	117, 359
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	573
BisI	GCNGC	3 cut(s)	131, 348, 351
BlsI	GCNGC	3 cut(s)	132, 349, 352
Bme1390I	CCNGG	2 cut(s)	90, 532
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	90, 532
BmsI	GCATC	2 cut(s)	39, 534
Bpu10I	CCTNAGC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	363, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	410, 502
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	363, 531
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	410, 502
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	117, 359
Bsh1236I	CGCG	2 cut(s)	83, 283
BshFI	GGCC	3 cut(s)	353, 368, 387
BsiHKAI	GWGCWC	2 cut(s)	44, 452
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	353, 368, 387
Bsp1286I	GDGCHC	2 cut(s)	44, 452
Bsp143I	GATC	3 cut(s)	193, 223, 284
BspACI	CCGC	2 cut(s)	28, 350
BspANI	GGCC	3 cut(s)	353, 368, 387
BspFNI	CGCG	2 cut(s)	83, 283
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	188, 201
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	410, 502
BssECI	CCNNGG	2 cut(s)	363, 531
BssMI	GATC	3 cut(s)	193, 223, 284
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	420, 432
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	2 cut(s)	83, 283
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	2 cut(s)	85, 572
BstKTI	GATC	3 cut(s)	196, 226, 287
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	3 cut(s)	193, 223, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	88, 530
BstUI	CGCG	2 cut(s)	83, 283
BstV1I	GCAGC	2 cut(s)	117, 359
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	353, 368, 387
BtgZI	GCGATG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	2 cut(s)	85, 572
Csp6I	GTAC	2 cut(s)	174, 377
CviAII	CATG	3 cut(s)	171, 444, 555
CviQI	GTAC	2 cut(s)	174, 377
DdeI	CTNAG	2 cut(s)	420, 432
DpnI	GATC	3 cut(s)	195, 225, 286
DpnII	GATC	3 cut(s)	193, 223, 284
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	42, 450
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	44, 452
Eco32I	GATATC	2 cut(s)	159, 298
Eco47III	AGCGCT	1 cut(s)	571
Eco53kI	GAGCTC	2 cut(s)	42, 450
EcoICRI	GAGCTC	2 cut(s)	42, 450
EcoRII	CCWGG	1 cut(s)	530
EcoRV	GATATC	2 cut(s)	159, 298
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	44, 452
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	174, 447, 558
FatI	CATG	3 cut(s)	170, 443, 554
Fnu4HI	GCNGC	3 cut(s)	131, 348, 351
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	2 cut(s)	44, 452
Fsp4HI	GCNGC	3 cut(s)	131, 348, 351
GlaI	GCGC	2 cut(s)	84, 571
GluI	GCNGC	3 cut(s)	131, 348, 351
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	353, 368, 387
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	2 cut(s)	85, 572
Hin1II	CATG	3 cut(s)	174, 447, 558
Hin6I	GCGC	2 cut(s)	83, 570
HinP1I	GCGC	2 cut(s)	83, 570
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	38, 577
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	561, 584, 611
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	170, 182, 215, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	420, 432
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	174, 447, 558
HspAI	GCGC	2 cut(s)	83, 570
Kzo9I	GATC	3 cut(s)	193, 223, 284
LmnI	GCTCC	1 cut(s)	447
LpnPI	CCDG	9 cut(s)	63, 103, 359, 391, 483, 517, 524, 544, 572
Lsp1109I	GCAGC	2 cut(s)	117, 359
LweI	GCATC	2 cut(s)	39, 534
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	289, 541, 620
MalI	GATC	3 cut(s)	195, 225, 286
MboI	GATC	3 cut(s)	193, 223, 284
MboII	GAAGA	4 cut(s)	124, 391, 470, 607
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	44, 452
MluCI	AATT	3 cut(s)	327, 483, 637
MnlI	CCTC	6 cut(s)	10, 13, 251, 255, 284, 377
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	90, 532
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	2 cut(s)	83, 283
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	193, 223, 284
NlaIII	CATG	3 cut(s)	174, 447, 558
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	174
PctI	GAATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	132, 349, 352
Psp124BI	GAGCTC	2 cut(s)	44, 452
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	175, 378
RsaNI	GTAC	2 cut(s)	174, 377
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	2 cut(s)	44, 452
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	3 cut(s)	131, 348, 351
Sau3AI	GATC	3 cut(s)	193, 223, 284
ScrFI	CCNGG	2 cut(s)	90, 532
SduI	GDGCHC	2 cut(s)	44, 452
SfaNI	GCATC	2 cut(s)	39, 534
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	327, 483, 637
SsiI	CCGC	2 cut(s)	28, 350
SstI	GAGCTC	2 cut(s)	44, 452
StyD4I	CCNGG	2 cut(s)	88, 530
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	33, 69
TasI	AATT	3 cut(s)	327, 483, 637
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	130, 347
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	5 cut(s)	17, 132, 302, 543, 630
TspGWI	ACGGA	1 cut(s)	206
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.