Rw1G019920

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
43200171 .. 43212679
12509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019920.1

Sequence Viewer

Length: 1812 bp
ATGAACGACCTGCTGCCAGCCAATGATGCAGTAGCAATTGGGCTAAGCTGTCACCCAGAAATAGATCCTGACAGCAGTCTTGATGAACAAAATGGAGAAGAACATTCAGCAAAGACAAATTCGGCAGAAATTCTTTCAGTGGTATCTGTAATTGCTTGTGTGATTGCAGTCTTAATGGATCCTTTGTTCTTTTTCATTCCATTCATCGATGAAAAGAGGATGTGTGTTGGAACTGATGAAGCGGTGAGGATTACAGCTCTTATTTCGCGAGCGCTTACAGATTTCACTTTCTTAGTGCAAATTATATATCAAATTCGTGGAGCAATGGTGGCGTCCTCCACAGTACAAATAGACGGAAATTCAAAAAGTTTTGGTTGGTTGCAACGGATAAAAGCAATGGCTACAGAATTATCATGTCGCTCTTTCATCACAGACATTTTCGCTATTCTTCCCATTCCACAAGTGCTGATAGTATGTTTGTTTTATAAATCTGAACAAGGATTCTCATCTTTGAAAATGGCTATGAATTTCATTCTACTGATCCAATATTTTCCGAGGATGTATCGAGTTTTCCTATCATCTAAGCAGTTGAGAAAGAATAGTGAACTGTGGTTTAAAGGGGTATTCTATTTCTTTATGTACATACTGACGAGTTATGTGCTTGGAGCCTTTTGGTATTTCAGTTCTATTCAAAGACAAACATCATGCTGGCAGCGAGCTATTCACCAACTTTGCCAAGAGGGAACGAACGTTGAAGAATGCCGATCTAGATCTACATCTAGATATAGTTATAGTTATAAATGTAAACGCTTCCCTAGGACTGAATTCATGGTGAAGTTCCTTGGTGATTCATGCCCTGTGAATCCACTAAATGCTACGGTATTCAACTTTGGAGTGTTTGGAGATGTCCTGGGGTCCGGTAACATGGGGGATGATGGTTTCCGAAAAAAGTTATTTTACTTCATGTGGTGGGGCCTTAAAAATTTGAGTAATTTTGGTACGAGTCTCAATACAACTGCATACGTGTGGGAAAACTGCTTTGCAATTCTTATTTGTGCTACCGGCTTGATACTGTTTGCTTATCTAATTGGAAATATGCAGGAATGTATGCAATCGGCGGAGGAAAAGAAAGTGGTTAGAGATAAGGTTCAAAAGAAACAACGAGATCTACAAGAGTGGATGAACGCAAATGGTCTCCCTGAGAATTTGAGGAAGAAAATCGTATCAAACATAAAGCAACAATTGGAAGACGACAAGGATGCTGATCTTGAAAATCTATTCTCACTTCTTCCATGGAATAGCGTAAAATCACTAAAGCATGTTTTGTGCATGAGGATGCTTGAAAAGGTACCGAGGCTTCAAAACATGGATGCAAAAGGGCTGAAAATGATCTGCCACTTTCTTAAGCCAGTGATCTACTCTGAGAAAACTATCCTTTTTGGAGTTGGAGAACCACTTGATAGCATGCTCTTCATTGTAGAAGGCATAGTGTTGATTTACTCGACGAGTAGAAGTAGTGATAGTATTTGTCAAGCTGCTGGGAAAGCAATCACAGTCGGTTCGCCAGCGATGATCCATAGATCTCTTGAGAATGGCGATGTTTATGGAGACGAACAACTTTTGAGTTGGGCATCATCAACAGACGTGCCTATCTCTTATGCAGCTCTTCCTATCTCGACTGAAACTGTGAGATGTCATACAAAAGTGGAAGGCTTTGCTCTCATAGCCAAGGACTTGAAAAGCGTAGTCTCTTCATACAAGTTACACTCGAATTACAGTAATTCTGATAATAAGGTCGAATGTTCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

68.2

Weight (kDa)

7.76

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 486, 798
Acc36I ACCTGC 1 cut(s) 18
Acc65I GGTACC 1 cut(s) 1348
AccB1I GGYRCC 1 cut(s) 1348
AccII CGCG 1 cut(s) 268
AciI CCGC 2 cut(s) 242, 1118
AclI AACGTT 1 cut(s) 750
AclWI GGATC 5 cut(s) 59, 173, 186, 535, 1567
AcsI RAATTY 8 cut(s) 118, 129, 312, 358, 526, 824, 982, 1204
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 4 cut(s) 345, 641, 1000, 1350
AfeI AGCGCT 1 cut(s) 273
AflII CTTAAG 1 cut(s) 1403
AflIII ACRYGT 1 cut(s) 1023
AjiI CACGTC 1 cut(s) 1645
AjnI CCWGG 1 cut(s) 909
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 5 cut(s) 48, 257, 719, 1535, 1664
AluI AGCT 5 cut(s) 48, 257, 719, 1535, 1664
Alw26I GTCTC 4 cut(s) 1010, 1199, 1602, 1753
AlwI GGATC 5 cut(s) 59, 173, 186, 535, 1567
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 1 cut(s) 973
ApeKI GCWGC 4 cut(s) 13, 712, 1535, 1661
ApoI RAATTY 8 cut(s) 118, 129, 312, 358, 526, 824, 982, 1204
Asp718I GGTACC 1 cut(s) 1348
AspA2I CCTAGG 1 cut(s) 815
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 915, 973
AsuHPI GGTGA 5 cut(s) 44, 256, 716, 844, 857
AvaII GGWCC 1 cut(s) 915
AvrII CCTAGG 1 cut(s) 815
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 1348
BarI GAAGNNNNNNTAC 2 cut(s) 1341, 1373
BbsI GAAGAC 1 cut(s) 1254
BbvI GCAGC 3 cut(s) 724, 1522, 1673
BccI CCATC 1 cut(s) 929
BcgI CGANNNNNNTGC 4 cut(s) 640, 674, 1241, 1275
BciT130I CCWGG 1 cut(s) 911
BcoDI GTCTC 4 cut(s) 1010, 1199, 1602, 1753
BfaI CTAG 4 cut(s) 768, 780, 816, 1810
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 1403
BfuAI ACCTGC 1 cut(s) 18
BglII AGATCT 3 cut(s) 770, 1165, 1580
BisI GCNGC 4 cut(s) 14, 713, 1536, 1662
BlnI CCTAGG 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 4 cut(s) 15, 714, 1537, 1663
Bme1390I CCNGG 1 cut(s) 911
Bme18I GGWCC 1 cut(s) 915
BmgBI CACGTC 1 cut(s) 1645
BmgT120I GGNCC 2 cut(s) 915, 973
BmiI GGNNCC 5 cut(s) 180, 667, 916, 974, 1350
BmrFI CCNGG 1 cut(s) 911
BmsI GCATC 5 cut(s) 16, 1249, 1326, 1360, 1640
BoxI GACNNNNGTC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 1254
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 1607
Bsa29I ATCGAT 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 1024
BsaBI GATNNNNATC 4 cut(s) 505, 769, 775, 1263
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 1199
BsaJI CCNNGG 7 cut(s) 554, 815, 841, 910, 1292, 1352, 1728
BsaWI WCCGGW 1 cut(s) 917
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse118I RCCGGY 1 cut(s) 1061
Bse1I ACTGG 1 cut(s) 1409
Bse3DI GCAATG 2 cut(s) 330, 402
Bse8I GATNNNNATC 4 cut(s) 505, 769, 775, 1263
BseBI CCWGG 1 cut(s) 911
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 7 cut(s) 554, 815, 841, 910, 1292, 1352, 1728
BseGI GGATG 7 cut(s) 225, 564, 937, 1185, 1264, 1341, 1375
BseJI GATNNNNATC 4 cut(s) 505, 769, 775, 1263
BseMI GCAATG 2 cut(s) 330, 402
BseMII CTCAG 2 cut(s) 1191, 1413
BseNI ACTGG 1 cut(s) 1409
BseXI GCAGC 3 cut(s) 724, 1522, 1673
BseYI CCCAGC 1 cut(s) 1538
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 975
BshNI GGYRCC 1 cut(s) 1348
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 2 cut(s) 918, 1062
BsmAI GTCTC 4 cut(s) 1010, 1199, 1602, 1753
BsmBI CGTCTC 1 cut(s) 1602
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 1 cut(s) 975
Bso31I GGTCTC 1 cut(s) 1199
Bsp1407I TGTACA 1 cut(s) 639
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 1292
Bsp68I TCGCGA 1 cut(s) 268
BspACI CCGC 2 cut(s) 242, 1118
BspANI GGCC 1 cut(s) 975
BspCNI CTCAG 2 cut(s) 1192, 1414
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 5 cut(s) 180, 667, 916, 974, 1350
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 5 cut(s) 59, 173, 186, 535, 1567
BspQI GCTCTTC 2 cut(s) 1475, 1671
BspT107I GGYRCC 1 cut(s) 1348
BspTI CTTAAG 1 cut(s) 1403
BspTNI GGTCTC 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 330, 402
BsrFI RCCGGY 1 cut(s) 1061
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 1409
BssAI RCCGGY 1 cut(s) 1061
BssECI CCNNGG 7 cut(s) 554, 815, 841, 910, 1292, 1352, 1728
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 4 cut(s) 815, 841, 1292, 1728
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 7 cut(s) 343, 609, 880, 1074, 1555, 1687, 1778
Bst6I CTCTTC 3 cut(s) 1475, 1671, 1756
BstACI GRCGYC 1 cut(s) 332
BstAFI CTTAAG 1 cut(s) 1403
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 1024
BstC8I GCNNGC 6 cut(s) 18, 270, 710, 717, 1466, 1566
BstDEI CTNAG 5 cut(s) 44, 292, 582, 1200, 1422
BstDSI CCRYGG 1 cut(s) 1292
BstF5I GGATG 7 cut(s) 225, 564, 937, 1185, 1264, 1341, 1375
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstMAI GTCTC 4 cut(s) 1010, 1199, 1602, 1753
BstMWI GCNNNNNNNGC 4 cut(s) 26, 329, 1544, 1724
BstNI CCWGG 1 cut(s) 911
BstNSI RCATGY 2 cut(s) 1322, 1468
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 909
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 724, 1522, 1673
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 5 cut(s) 64, 178, 770, 1165, 1580
BstYI RGATCY 5 cut(s) 64, 178, 770, 1165, 1580
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 1 cut(s) 975
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 1292
BtgZI GCGATG 2 cut(s) 1583, 1611
BtrI CACGTC 1 cut(s) 1645
BtsCI GGATG 7 cut(s) 225, 564, 937, 1185, 1264, 1341, 1375
BtsIMutI CAGTG 2 cut(s) 144, 1416
BtuMI TCGCGA 1 cut(s) 268
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 6 cut(s) 18, 270, 710, 717, 1466, 1566
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 1061
Cfr13I GGNCC 2 cut(s) 915, 973
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 321
Csp6I GTAC 4 cut(s) 344, 640, 999, 1349
CviQI GTAC 4 cut(s) 344, 640, 999, 1349
DdeI CTNAG 5 cut(s) 44, 292, 582, 1200, 1422
DraI TTTAAA 1 cut(s) 616
Eam1104I CTCTTC 3 cut(s) 1475, 1671, 1756
EarI CTCTTC 3 cut(s) 1475, 1671, 1756
EciI GGCGGA 1 cut(s) 1133
Eco130I CCWWGG 4 cut(s) 815, 841, 1292, 1728
Eco31I GGTCTC 1 cut(s) 1199
Eco47I GGWCC 1 cut(s) 915
Eco47III AGCGCT 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 973
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 909
EcoT14I CCWWGG 4 cut(s) 815, 841, 1292, 1728
ErhI CCWWGG 4 cut(s) 815, 841, 1292, 1728
Esp3I CGTCTC 1 cut(s) 1602
Fnu4HI GCNGC 4 cut(s) 14, 713, 1536, 1662
FokI GGATG 7 cut(s) 232, 571, 944, 1192, 1271, 1348, 1382
Fsp4HI GCNGC 4 cut(s) 14, 713, 1536, 1662
FspBI CTAG 4 cut(s) 768, 780, 816, 1810
GlaI GCGC 1 cut(s) 273
GluI GCNGC 4 cut(s) 14, 713, 1536, 1662
GsaI CCCAGC 1 cut(s) 1542
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 975
HapII CCGG 2 cut(s) 918, 1062
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 332
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 4 cut(s) 501, 848, 862, 1003
HpaII CCGG 2 cut(s) 918, 1062
HphI GGTGA 5 cut(s) 44, 256, 716, 844, 857
Hpy166II GTNNAC 2 cut(s) 605, 806
Hpy188I TCNGA 5 cut(s) 493, 555, 944, 1423, 1786
Hpy188III TCNNGA 8 cut(s) 68, 80, 267, 768, 780, 1268, 1586, 1675
Hpy8I GTNNAC 2 cut(s) 605, 806
Hpy99I CGWCG 1 cut(s) 1507
HpyAV CCTTC 2 cut(s) 1475, 1703
HpyCH4III ACNGT 7 cut(s) 343, 609, 880, 1074, 1555, 1687, 1778
HpyCH4IV ACGT 3 cut(s) 750, 1023, 1644
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 329, 1544, 1724
HpyF3I CTNAG 5 cut(s) 44, 292, 582, 1200, 1422
HpySE526I ACGT 3 cut(s) 750, 1023, 1644
Hsp92I GRCGYC 1 cut(s) 332
HspAI GCGC 1 cut(s) 272
KpnI GGTACC 1 cut(s) 1352
LguI GCTCTTC 2 cut(s) 1475, 1671
LmnI GCTCC 2 cut(s) 320, 665
Lsp1109I GCAGC 3 cut(s) 724, 1522, 1673
LweI GCATC 5 cut(s) 16, 1249, 1326, 1360, 1640
MaeI CTAG 4 cut(s) 768, 780, 816, 1810
MaeII ACGT 3 cut(s) 750, 1023, 1644
MaeIII GTNAC 3 cut(s) 50, 920, 1761
MboII GAAGA 9 cut(s) 110, 440, 767, 1225, 1259, 1280, 1462, 1658, 1743
MfeI CAATTG 2 cut(s) 36, 1241
MflI RGATCY 5 cut(s) 64, 178, 770, 1165, 1580
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 2 cut(s) 208, 1426
MnlI CCTC 9 cut(s) 210, 240, 346, 549, 733, 1114, 1203, 1326, 1347
MseI TTAA 4 cut(s) 173, 615, 978, 1404
MslI CAYNNNNRTG 2 cut(s) 1024, 1334
MspCI CTTAAG 1 cut(s) 1403
MspI CCGG 2 cut(s) 918, 1062
MspR9I CCNGG 1 cut(s) 911
MunI CAATTG 2 cut(s) 36, 1241
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 1 cut(s) 911
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 4 cut(s) 26, 329, 1544, 1724
NcoI CCATGG 1 cut(s) 1292
NlaIV GGNNCC 5 cut(s) 180, 667, 916, 974, 1350
NmuCI GTSAC 1 cut(s) 50
NruI TCGCGA 1 cut(s) 268
NspI RCATGY 2 cut(s) 1322, 1468
PaeI GCATGC 1 cut(s) 1468
PciSI GCTCTTC 2 cut(s) 1475, 1671
PctI GAATGC 1 cut(s) 764
PfeI GAWTC 3 cut(s) 501, 848, 862
PkrI GCNGC 4 cut(s) 15, 714, 1537, 1663
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
Ppu21I YACGTR 1 cut(s) 1024
PshAI GACNNNNGTC 1 cut(s) 75
PsiI TTATAA 2 cut(s) 486, 798
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 909
PspFI CCCAGC 1 cut(s) 1538
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 5 cut(s) 180, 667, 916, 974, 1350
PspPI GGNCC 2 cut(s) 915, 973
PsuI RGATCY 5 cut(s) 64, 178, 770, 1165, 1580
RruI TCGCGA 1 cut(s) 268
RsaI GTAC 4 cut(s) 345, 641, 1000, 1350
RsaNI GTAC 4 cut(s) 344, 640, 999, 1349
RseI CAYNNNNRTG 2 cut(s) 1024, 1334
SapI GCTCTTC 2 cut(s) 1475, 1671
SaqAI TTAA 4 cut(s) 173, 615, 978, 1404
SatI GCNGC 4 cut(s) 14, 713, 1536, 1662
Sau96I GGNCC 2 cut(s) 915, 973
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 1 cut(s) 911
SfaNI GCATC 5 cut(s) 16, 1249, 1326, 1360, 1640
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 915
SmiMI CAYNNNNRTG 2 cut(s) 1024, 1334
SmlI CTYRAG 2 cut(s) 1403, 1586
SmoI CTYRAG 2 cut(s) 1403, 1586
SphI GCATGC 1 cut(s) 1468
SsiI CCGC 2 cut(s) 242, 1118
SspI AATATT 1 cut(s) 548
SspMI CTAG 4 cut(s) 768, 780, 816, 1810
StyD4I CCNGG 1 cut(s) 909
StyI CCWWGG 4 cut(s) 815, 841, 1292, 1728
TaaI ACNGT 7 cut(s) 343, 609, 880, 1074, 1555, 1687, 1778
TaiI ACGT 3 cut(s) 753, 1026, 1647
TaqI TCGA 6 cut(s) 207, 565, 1502, 1676, 1769, 1797
TatI WGTACW 2 cut(s) 343, 639
TfiI GAWTC 3 cut(s) 501, 848, 862
Tru1I TTAA 4 cut(s) 173, 615, 978, 1404
Tru9I TTAA 4 cut(s) 173, 615, 978, 1404
TscAI CASTG 2 cut(s) 144, 1416
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 4 cut(s) 13, 712, 1535, 1661
Tsp45I GTSAC 1 cut(s) 50
TspGWI ACGGA 2 cut(s) 369, 400
TspRI CASTG 2 cut(s) 144, 1416
Vha464I CTTAAG 1 cut(s) 1403
VpaK11BI GGWCC 1 cut(s) 915
XapI RAATTY 8 cut(s) 118, 129, 312, 358, 526, 824, 982, 1204
XbaI TCTAGA 2 cut(s) 767, 779
XceI RCATGY 2 cut(s) 1322, 1468
XmaJI CCTAGG 1 cut(s) 815
XspI CTAG 4 cut(s) 768, 780, 816, 1810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.