Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006945.1

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Reverse (-)

117055 .. 119372

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006945.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtgcctctatatggacaaaaggatgaggaacgcagtcctcattacgcgatcagtcacagatatcacgttcctatttcatattgtatatcaaattcgtgaagctgtgaaagcagcggcctatgtgtccaaggccaagctggtacagagaggccactcaaaactcttcaactggtttggacacgctaaggcaataactaagaagttgtcatggagctgtgtcctaactgacattctcgctgttcttccaattccacatgtaggaaggatcgaaaatatggatgaaagaggattgagagtcatctgccactatctcaagccagtgacctatactgagaaatcaattgcttttcgaatgggagaaccacttgacagcatgctctttatcatggaaggcattatgttgatatacccgactagtactagtactagtactactgatcatcaagttggaagagcagatataggttccccatcaacaatccgcggcttcctagagaacggtgatgtttatggagctgaacaacttctgagttgggcatcaccaccggacatgtcctatgtctcttacgcagaccttcctatcttaaccgaaaatgtaaaatgtctttcagaagtagaagggtttgttctcactgccaaggacttgaaaaatgtactctcggtgtacaagttacaggggaattacaatagttccagccatctggtgaaggtggaacgttctatatcaagaggaacatcaatgattcgtcgtaaccgcattaatcctactccacggccaggcacagatcagggcgggaatgaggaaacagatattcaagattcaaataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

277

Amino Acids

31.08

Weight (kDa)

8.79

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	49, 486
AciI	CCGC	5 cut(s)	116, 484, 486, 757, 795
AclI	AACGTT	1 cut(s)	718
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	776
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	6 cut(s)	144, 421, 427, 433, 657, 668
AfiI	CCNNNNNNNGG	3 cut(s)	13, 260, 779
AflIII	ACRYGT	2 cut(s)	256, 552
AgsI	TTSAA	4 cut(s)	169, 649, 818, 825
AhlI	ACTAGT	3 cut(s)	416, 422, 428
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	4 cut(s)	104, 139, 216, 518
AluI	AGCT	4 cut(s)	104, 139, 216, 518
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	4 cut(s)	117, 132, 151, 776
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	515, 534, 718
AsuII	TTCGAA	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	481, 708
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	780
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	568
BcuI	ACTAGT	3 cut(s)	416, 422, 428
BfaI	CTAG	4 cut(s)	417, 423, 429, 494
BisI	GCNGC	3 cut(s)	114, 117, 487
BlsI	GCNGC	3 cut(s)	115, 118, 488
BmcAI	AGTACT	3 cut(s)	421, 427, 433
Bme1390I	CCNGG	1 cut(s)	780
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	780
BmsI	GCATC	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	129, 484, 639, 773
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 260, 779
Bse1I	ACTGG	2 cut(s)	176, 320
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	4 cut(s)	129, 484, 639, 773
BseGI	GGATG	2 cut(s)	30, 286
BseLI	CCNNNNNNNGG	3 cut(s)	13, 260, 779
BseMII	CTCAG	2 cut(s)	324, 521
BseNI	ACTGG	2 cut(s)	176, 320
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	49, 486
BshFI	GGCC	4 cut(s)	119, 134, 153, 778
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	13, 260, 779
BsmAI	GTCTC	1 cut(s)	568
BsnI	GGCC	4 cut(s)	119, 134, 153, 778
Bsp119I	TTCGAA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	4 cut(s)	50, 267, 439, 787
BspACI	CCGC	5 cut(s)	116, 484, 486, 757, 795
BspANI	GGCC	4 cut(s)	119, 134, 153, 778
BspCNI	CTCAG	2 cut(s)	325, 522
BspFNI	CGCG	2 cut(s)	49, 486
BspLI	GGNNCC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	176, 320
BssECI	CCNNGG	4 cut(s)	129, 484, 639, 773
BssMI	GATC	4 cut(s)	50, 267, 439, 787
BssT1I	CCWWGG	2 cut(s)	129, 639
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	170, 448
BstAUI	TGTACA	1 cut(s)	666
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	186, 198, 333, 530
BstDSI	CCRYGG	2 cut(s)	484, 773
BstF5I	GGATG	2 cut(s)	30, 286
BstFNI	CGCG	2 cut(s)	49, 486
BstKTI	GATC	4 cut(s)	53, 270, 442, 790
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	4 cut(s)	50, 267, 439, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	3 cut(s)	260, 379, 556
BstSCI	CCNGG	1 cut(s)	778
BstUI	CGCG	2 cut(s)	49, 486
BstV1I	GCAGC	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	703
BsuRI	GGCC	4 cut(s)	119, 134, 153, 778
BtgI	CCRYGG	2 cut(s)	484, 773
BtsCI	GGATG	2 cut(s)	30, 286
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	327, 633
Cac8I	GCNNGC	1 cut(s)	377
Cfr42I	CCGCGG	1 cut(s)	487
Csp6I	GTAC	6 cut(s)	143, 420, 426, 432, 656, 667
CviAII	CATG	5 cut(s)	210, 257, 376, 388, 553
CviQI	GTAC	6 cut(s)	143, 420, 426, 432, 656, 667
DdeI	CTNAG	4 cut(s)	186, 198, 333, 530
DpnI	GATC	4 cut(s)	52, 269, 441, 789
DpnII	GATC	4 cut(s)	50, 267, 439, 787
EaeI	YGGCCR	1 cut(s)	776
Eam1104I	CTCTTC	2 cut(s)	170, 448
EarI	CTCTTC	2 cut(s)	170, 448
Eco130I	CCWWGG	2 cut(s)	129, 639
Eco32I	GATATC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	778
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	129, 639
ErhI	CCWWGG	2 cut(s)	129, 639
FaeI	CATG	5 cut(s)	213, 260, 379, 391, 556
FatI	CATG	5 cut(s)	209, 256, 375, 387, 552
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	114, 117, 487
FokI	GGATG	2 cut(s)	37, 293
Fsp4HI	GCNGC	3 cut(s)	114, 117, 487
FspBI	CTAG	4 cut(s)	417, 423, 429, 494
GluI	GCNGC	3 cut(s)	114, 117, 487
HaeIII	GGCC	4 cut(s)	119, 134, 153, 778
HapII	CCGG	1 cut(s)	548
Hin1II	CATG	5 cut(s)	213, 260, 379, 391, 556
HinfI	GANTC	3 cut(s)	297, 745, 821
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	3 cut(s)	515, 534, 718
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	2 cut(s)	531, 613
Hpy188III	TCNNGA	3 cut(s)	98, 729, 818
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	5 cut(s)	258, 386, 587, 614, 703
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	2 cut(s)	68, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	4 cut(s)	186, 198, 333, 530
HpySE526I	ACGT	2 cut(s)	68, 718
Hsp92II	CATG	5 cut(s)	213, 260, 379, 391, 556
Ksp22I	TGATCA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	50, 267, 439, 787
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	213, 515
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	4 cut(s)	417, 423, 429, 494
MaeII	ACGT	2 cut(s)	68, 718
MaeIII	GTNAC	4 cut(s)	55, 322, 672, 752
MalI	GATC	4 cut(s)	52, 269, 441, 789
MboI	GATC	4 cut(s)	50, 267, 439, 787
MboII	GAAGA	3 cut(s)	157, 236, 465
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	4 cut(s)	93, 249, 342, 682
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	7 cut(s)	17, 21, 50, 143, 281, 725, 796
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	587, 762
MspA1I	CMGCKG	2 cut(s)	116, 486
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	780
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	2 cut(s)	49, 486
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	4 cut(s)	50, 267, 439, 787
NlaIII	CATG	5 cut(s)	213, 260, 379, 391, 556
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	55, 322
NspI	RCATGY	3 cut(s)	260, 379, 556
NspV	TTCGAA	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	379
PciI	ACATGT	2 cut(s)	256, 552
PciSI	GCTCTTC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	745, 821
PkrI	GCNGC	3 cut(s)	115, 118, 488
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	2 cut(s)	256, 552
PshBI	ATTAAT	1 cut(s)	762
Psp1406I	AACGTT	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	469
RsaI	GTAC	6 cut(s)	144, 421, 427, 433, 657, 668
RsaNI	GTAC	6 cut(s)	143, 420, 426, 432, 656, 667
SacII	CCGCGG	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	587, 762
SatI	GCNGC	3 cut(s)	114, 117, 487
Sau3AI	GATC	4 cut(s)	50, 267, 439, 787
ScaI	AGTACT	3 cut(s)	421, 427, 433
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	780
SfaNI	GCATC	1 cut(s)	548
Sfr303I	CCGCGG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SpeI	ACTAGT	3 cut(s)	416, 422, 428
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	4 cut(s)	93, 249, 342, 682
SsiI	CCGC	5 cut(s)	116, 484, 486, 757, 795
SspMI	CTAG	4 cut(s)	417, 423, 429, 494
StyD4I	CCNGG	1 cut(s)	778
StyI	CCWWGG	2 cut(s)	129, 639
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	2 cut(s)	71, 721
TaqI	TCGA	2 cut(s)	270, 352
TasI	AATT	4 cut(s)	93, 249, 342, 682
TatI	WGTACW	5 cut(s)	419, 425, 431, 655, 666
TauI	GCSGC	2 cut(s)	119, 489
TfiI	GAWTC	2 cut(s)	745, 821
Tru1I	TTAA	2 cut(s)	587, 762
Tru9I	TTAA	2 cut(s)	587, 762
TscAI	CASTG	2 cut(s)	327, 640
TseFI	GTSAC	2 cut(s)	55, 322
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	55, 322
TspDTI	ATGAA	2 cut(s)	68, 297
TspRI	CASTG	2 cut(s)	327, 640
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	3 cut(s)	260, 379, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	4 cut(s)	417, 423, 429, 494
ZrmI	AGTACT	3 cut(s)	421, 427, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.