Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Reverse (-)

56374329 .. 56376070

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTACATCCTCTCAAGTCATGTAATCGGAGCGTTTTGGTACTTCAGTTCTGTTCAAATCGAAGCAGTATGTTGGCACTTGGCCCTGGGAGCTGGAAATGTCAGTTTCCAATGTGATGACCCTCCTCTATCTGTAACCAATCGGGAGAAAATTAATGCCACTTGCATATATGGGACGTCGGATCGGTCATTTGATTATGGGTCATTTTTGGATACAATTCAAGCCGGCTACACAGGACCTACAAGATTCCGAGAAAAGTTATTTTACTTTGCCAATCGTTTTTTTTTTTTTTTTTTTTTGTCTCTCTCTCTAGATGATAACAGAAAACTTGAAGAAGATTATGAATGTATGCAATCCTCGGAGGAAAAGAAAGTGGCAACTGATAAGGTTCAGATGAAAGAGCAAGAGCTACAAGAATGGATGAACAAAAATGAAGTTGAAGTAGAGATCATGACAAAGATAACAGAAAACTTGAAAGACGACAAAAATGCTGAAGTACAGAATCTATTCTCTCTTCTTCCCTGGAATACCATAAAGGATCTCAAGCTTACTGTCTGCATGAGTATGCTAAAGAAAGTACGAAGGCTCGAAAATATGGATGAAAGAGGATTGAGACTGATCTGCCACTATCTCAAGCCAGTTACCTACAATGAGAAAACAATTGCTTTTCGAATGGGAGAACCACTTGATAGCATGCTCTTTATCATGGAAGACCTTCCTATCTTGACCGAAAATGTAAAATGTCTTTCACAAGTAGAAGGCTTTGTTCTCACTGCCAAGGACTTGAAAAATGTAGTCTCCGTGTACAAGTTACAAGGGAATTACAATAGTCGTTCCAGCCATCTGGTGGAGGAGGTGGAACGTTCTATCTCAAGCGGAACATCAATGATTCATCGTAACCGCATTAATCCTACTCCACGGCCAGGCACATGGGGCGGGGATGAGGAAACAGATATTCAAGATTCAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

325

Amino Acids

37.48

Weight (kDa)

5.18

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	847
AciI	CCGC	3 cut(s)	876, 901, 936
AclI	AACGTT	1 cut(s)	862
AclWI	GGATC	2 cut(s)	189, 546
AcoI	YGGCCR	1 cut(s)	920
AcuI	CTGAAG	2 cut(s)	28, 513
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	5 cut(s)	5, 41, 498, 579, 806
AfiI	CCNNNNNNNGG	2 cut(s)	847, 923
AgsI	TTSAA	8 cut(s)	56, 221, 332, 440, 475, 787, 959, 966
AjnI	CCWGG	3 cut(s)	84, 521, 922
AluBI	AGCT	3 cut(s)	92, 409, 547
AluI	AGCT	3 cut(s)	92, 409, 547
Alw26I	GTCTC	3 cut(s)	306, 607, 802
AlwI	GGATC	2 cut(s)	189, 546
AoxI	GGCC	2 cut(s)	81, 920
AseI	ATTAAT	2 cut(s)	153, 906
Asp700I	GAANNNNTTC	2 cut(s)	506, 714
AspS9I	GGNCC	2 cut(s)	82, 236
AsuII	TTCGAA	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbsI	GAAGAC	1 cut(s)	717
BccI	CCATC	1 cut(s)	849
BceAI	ACGGC	1 cut(s)	935
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	3 cut(s)	86, 523, 924
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	3 cut(s)	306, 607, 802
BfaI	CTAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	86, 523, 924
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	82, 236
BmrFI	CCNGG	3 cut(s)	86, 523, 924
BpiI	GAAGAC	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	670
BpuEI	CTTGAG	3 cut(s)	527, 617, 856
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	6 cut(s)	84, 85, 357, 521, 777, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	847, 923
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	86, 523, 924
BseDI	CCNNGG	6 cut(s)	84, 85, 357, 521, 777, 917
BseGI	GGATG	4 cut(s)	6, 426, 604, 946
BseLI	CCNNNNNNNGG	2 cut(s)	847, 923
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	2 cut(s)	114, 866
BshFI	GGCC	2 cut(s)	83, 922
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	847, 923
BsmAI	GTCTC	3 cut(s)	306, 607, 802
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	83, 922
Bsp119I	TTCGAA	1 cut(s)	670
Bsp1407I	TGTACA	2 cut(s)	3, 804
Bsp143I	GATC	4 cut(s)	181, 447, 538, 618
BspACI	CCGC	3 cut(s)	876, 901, 936
BspANI	GGCC	2 cut(s)	83, 922
BspHI	TCATGA	1 cut(s)	450
BspPI	GGATC	2 cut(s)	189, 546
BspT104I	TTCGAA	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	2 cut(s)	3, 804
BsrI	ACTGG	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	6 cut(s)	84, 85, 357, 521, 777, 917
BssMI	GATC	4 cut(s)	181, 447, 538, 618
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	86, 523, 924
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	176
BstAUI	TGTACA	2 cut(s)	3, 804
BstBI	TTCGAA	1 cut(s)	670
BstC8I	GCNNGC	2 cut(s)	226, 695
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	4 cut(s)	6, 426, 604, 946
BstKTI	GATC	4 cut(s)	184, 450, 541, 621
BstMAI	GTCTC	3 cut(s)	306, 607, 802
BstMBI	GATC	4 cut(s)	181, 447, 538, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 933
BstNI	CCWGG	3 cut(s)	86, 523, 924
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	3 cut(s)	84, 521, 922
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	2 cut(s)	844, 930
BstYI	RGATCY	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	83, 922
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	4 cut(s)	6, 426, 604, 946
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	226, 695
CciI	TCATGA	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	82, 236
Csp6I	GTAC	5 cut(s)	4, 40, 497, 578, 805
CviAII	CATG	6 cut(s)	20, 451, 559, 694, 706, 930
CviQI	GTAC	5 cut(s)	4, 40, 497, 578, 805
DpnI	GATC	4 cut(s)	183, 449, 540, 620
DpnII	GATC	4 cut(s)	181, 447, 538, 618
EaeI	YGGCCR	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	28, 513
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	84, 521, 922
EcoT14I	CCWWGG	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	6 cut(s)	23, 454, 562, 697, 709, 933
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	6 cut(s)	19, 450, 558, 693, 705, 929
FauI	CCCGC	1 cut(s)	929
FokI	GGATG	3 cut(s)	433, 611, 953
FspBI	CTAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	83, 922
HapII	CCGG	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	6 cut(s)	23, 454, 562, 697, 709, 933
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	4 cut(s)	246, 502, 889, 962
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	5 cut(s)	29, 181, 251, 361, 393
Hpy188III	TCNNGA	5 cut(s)	143, 311, 451, 724, 959
Hpy8I	GTNNAC	1 cut(s)	805
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	576, 725, 752
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	2 cut(s)	176, 862
HpyCH4V	TGCA	3 cut(s)	165, 352, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 933
HpySE526I	ACGT	2 cut(s)	176, 862
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	6 cut(s)	23, 454, 562, 697, 709, 933
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	181, 447, 538, 618
LmnI	GCTCC	2 cut(s)	29, 89
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	176, 862
MaeIII	GTNAC	4 cut(s)	133, 640, 810, 896
MalI	GATC	4 cut(s)	183, 449, 540, 620
MboI	GATC	4 cut(s)	181, 447, 538, 618
MboII	GAAGA	5 cut(s)	344, 347, 506, 509, 722
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	4 cut(s)	150, 216, 660, 820
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	9 cut(s)	20, 132, 135, 355, 367, 599, 844, 847, 937
MroNI	GCCGGC	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	506, 714
MseI	TTAA	2 cut(s)	153, 906
MslI	CAYNNNNRTG	1 cut(s)	563
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	3 cut(s)	86, 523, 924
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	3 cut(s)	86, 523, 924
MwoI	GCNNNNNNNGC	2 cut(s)	89, 933
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	4 cut(s)	181, 447, 538, 618
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	6 cut(s)	23, 454, 562, 697, 709, 933
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	670
PaeI	GCATGC	1 cut(s)	697
PagI	TCATGA	1 cut(s)	450
PasI	CCCWGGG	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	506, 714
PfeI	GAWTC	4 cut(s)	246, 502, 889, 962
PflMI	CCANNNNNTGG	1 cut(s)	847
PpuMI	RGGWCCY	1 cut(s)	236
PshBI	ATTAAT	2 cut(s)	153, 906
Psp1406I	AACGTT	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	84, 521, 922
PspGI	CCWGG	3 cut(s)	84, 521, 922
PspPI	GGNCC	2 cut(s)	82, 236
PspPPI	RGGWCCY	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	5 cut(s)	5, 41, 498, 579, 806
RsaNI	GTAC	5 cut(s)	4, 40, 497, 578, 805
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	153, 906
Sau3AI	GATC	4 cut(s)	181, 447, 538, 618
Sau96I	GGNCC	2 cut(s)	82, 236
ScrFI	CCNGG	3 cut(s)	86, 523, 924
SfuI	TTCGAA	1 cut(s)	670
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	4 cut(s)	13, 542, 632, 871
SmoI	CTYRAG	4 cut(s)	13, 542, 632, 871
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	4 cut(s)	150, 216, 660, 820
SsiI	CCGC	3 cut(s)	876, 901, 936
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	84, 521, 922
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	2 cut(s)	179, 865
TaqI	TCGA	3 cut(s)	60, 588, 670
TaqII	GACCGA	2 cut(s)	174, 743
TasI	AATT	4 cut(s)	150, 216, 660, 820
TatI	WGTACW	3 cut(s)	3, 496, 804
TfiI	GAWTC	4 cut(s)	246, 502, 889, 962
Tru1I	TTAA	2 cut(s)	153, 906
Tru9I	TTAA	2 cut(s)	153, 906
TscAI	CASTG	1 cut(s)	778
TspDTI	ATGAA	6 cut(s)	357, 410, 437, 447, 615, 881
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	1 cut(s)	778
Van91I	CCANNNNNTGG	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	2 cut(s)	153, 906
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmnI	GAANNNNTTC	2 cut(s)	506, 714
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.