Rw4G004310

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
8606223 .. 8609101
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004310.1

Sequence Viewer

Length: 1773 bp
ATGGGCTCTCACCCAGATATAGTTCACGCTGTCGAAATTGCTAACGCGCCACCCGGAGAAGTAAATGGAACAAAGAAGAAATGGGAAACAATGCTGCTTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTACGATTGCAGTCTCAACGGATCCTTTGTTTTTTTACATTGCATTCTTTGATCGCAAGAAAATGTGCCTCTATATGGACAAAAGGATGAGGAACGCAGTCCTCATTACGCGATCAGTCACAGATATCACGTTCCTATTTCATATTGTATATCAAATTCGTGAAGCTGTGAAAGCAGCGGCCTATGTGTCCAAGCCCAAGCTGGTACAGAGAGGCCAGTCAAAACTCTTCAATTGGTTTGGACACGCTAAGGCAATAACTAAGAAGTTGTCATGGAGCTCTGTCCTAACTGACATTCTCGCTGTTCTTCCAATTCCACATGTGCTGATTTTAGTTATGATTTATGCCCCCAATTATGGATTTTCAGAGAACAAAATATCTCTGAATTATATGCTTCTCGCGCAATATGTTCCAAGGATGTATCGAATCTTCATTTCGTCTAAGCTAATTAGAAAAAATAGTAGCATGTGGCTCAAAGCTGCATTCTATTTTTTTATGTACATCCTCTCAAGTCATGTAATTGGAGCATTTTGGCACTTTAGTTCTGTTCAAATCGAAGTCGTATGTTGGCAATGGGCACTCGGAGAGAAACGGAAAGTGACATGTGATGACCCTCCTTTACCTGTAAGCAGTAATGATCATTTGAATGCAACTTGCATAAATGGGACGGCGGAGACGCCAAATTTCTTTAATTATGGACCCTTTTCGGAAACAATTAAAACCGGCTTCACAGGACGTGCAACATTCCGCGGAAAGTTAATTTACTTTTTGTGGTGGGGACTTAAAAATCTGAGTAACTTTGGTACAGACATCGATGCAACTGTCTACACTTGGAATAATATATTTGCAATTTTTGTTTCTGGCATTGGCTTGGTACTGTTTTCGTTGTTTATTGGAAATATGCAGCAATGTATGCAATCCTCGGAGCAAAATAAAGTGGCAACTGATACGGTACAGATGAAAGAGCAAGAAGTACAAGAATGGATGGACAAAAATCGTCTCCCTGAGAAGTGCAGAGACGCTGAGAAGCTGAGGATAGAGATAATGAAAAAGATAACAGAAAACTTGAAAGACGACAAAAATGCAGAAGTACAAACCCTGTTCTCCCTTCTTCCCTGGAATACCGTAAAAGATCTCAAGCTTGCTATCTGCATGAGTATGCTAAAGAAAGACGAAAATATGGATGAAAGAGGATTGAGAGTCATCTGCCACTATCTCAAGCCAGTGACCTATACTGAGAAATCAATTGCTTTTCGAATGGGAGAACCACTTGACAGCATGCTCTTTATCATGGAAGGCATTAACGGTGATGTTTATGGAGCTGAACAACTTCTGAGTTGGGCATCACCACCGGACATGTCCTATGTCTCTTACGCAGACCTTCCTATCTTAACCGAAAATGTAAAATGTCTTTCAGAAGTAGAAGGGTTTGTTCTCACTGCCAAGGACTTGAAAAATGTACTCTCGGTGTACAAGTTACAGGGGAATTACAATAGTTCCAGCCATCTGGTGAAGGTGGAACGTTCTATATCAAGAGGAACATCAATGATTCGTCGTAACCGCATTAATCCTACTCCACGGCCAGGCACAGATCAGGGCGGGAATGAGGAAACAGATATTCAAGATTCAAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

67.35

Weight (kDa)

8.89

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 960
AccII CGCG 4 cut(s) 47, 247, 536, 885
AciI CCGC 6 cut(s) 314, 806, 883, 885, 1696, 1734
AclI AACGTT 1 cut(s) 1657
AclWI GGATC 2 cut(s) 152, 165
AcoI YGGCCR 1 cut(s) 1715
AcsI RAATTY 2 cut(s) 291, 817
AcyI GRCGYC 1 cut(s) 812
AfiI CCNNNNNNNGG 3 cut(s) 211, 491, 1718
AflIII ACRYGT 3 cut(s) 454, 737, 1491
AgsI TTSAA 7 cut(s) 367, 686, 781, 1204, 1588, 1757, 1764
AjiI CACGTC 1 cut(s) 872
AjnI CCWGG 2 cut(s) 1250, 1717
AluBI AGCT 8 cut(s) 302, 337, 414, 580, 614, 1165, 1276, 1457
AluI AGCT 8 cut(s) 302, 337, 414, 580, 614, 1165, 1276, 1457
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 5 cut(s) 154, 803, 1139, 1146, 1507
AlwI GGATC 2 cut(s) 152, 165
AoxI GGCC 3 cut(s) 315, 349, 1715
ApeKI GCWGC 4 cut(s) 94, 311, 614, 1039
ApoI RAATTY 2 cut(s) 291, 817
AseI ATTAAT 1 cut(s) 1701
Asp700I GAANNNNTTC 1 cut(s) 1464
AspLEI GCGC 2 cut(s) 49, 538
AspS9I GGNCC 1 cut(s) 833
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 3 cut(s) 1454, 1473, 1657
AsuII TTCGAA 1 cut(s) 1390
AvaII GGWCC 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 715
BamHI GGATCC 1 cut(s) 157
BanII GRGCYC 2 cut(s) 8, 416
BarI GAAGNNNNNNTAC 2 cut(s) 548, 580
Bbv12I GWGCWC 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 1166
BbvI GCAGC 4 cut(s) 81, 323, 601, 1051
BccI CCATC 2 cut(s) 1114, 1647
BceAI ACGGC 2 cut(s) 819, 1730
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciT130I CCWGG 2 cut(s) 1252, 1719
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 5 cut(s) 154, 803, 1139, 1146, 1507
BglII AGATCT 1 cut(s) 1267
BisI GCNGC 5 cut(s) 95, 312, 315, 615, 1040
BlsI GCNGC 5 cut(s) 96, 313, 316, 616, 1041
Bme1390I CCNGG 3 cut(s) 54, 1252, 1719
Bme18I GGWCC 1 cut(s) 833
BmgBI CACGTC 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 2 cut(s) 159, 835
BmrFI CCNGG 3 cut(s) 54, 1252, 1719
BmsI GCATC 2 cut(s) 940, 1487
Bpu10I CCTNAGC 2 cut(s) 384, 1166
Bpu14I TTCGAA 1 cut(s) 1390
BpuEI CTTGAG 3 cut(s) 628, 1256, 1337
BpuMI CCSGG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 812
BsaJI CCNNGG 6 cut(s) 548, 883, 1056, 1250, 1578, 1712
BsaWI WCCGGW 1 cut(s) 1486
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 491, 1718
Bse118I RCCGGY 1 cut(s) 857
Bse1I ACTGG 2 cut(s) 352, 1358
Bse3DI GCAATG 3 cut(s) 174, 713, 1049
BseBI CCWGG 2 cut(s) 1252, 1719
BseCI ATCGAT 1 cut(s) 948
BseDI CCNNGG 6 cut(s) 548, 883, 1056, 1250, 1578, 1712
BseGI GGATG 5 cut(s) 228, 558, 636, 1125, 1324
BseLI CCNNNNNNNGG 3 cut(s) 211, 491, 1718
BseMI GCAATG 3 cut(s) 174, 713, 1049
BseMII CTCAG 6 cut(s) 917, 1131, 1149, 1157, 1362, 1460
BseNI ACTGG 2 cut(s) 352, 1358
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 4 cut(s) 81, 323, 601, 1051
BsgI GTGCAG 1 cut(s) 1168
Bsh1236I CGCG 4 cut(s) 47, 247, 536, 885
BshFI GGCC 3 cut(s) 317, 351, 1717
BshVI ATCGAT 1 cut(s) 948
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 3 cut(s) 54, 858, 1487
BslFI GGGAC 2 cut(s) 814, 927
BslI CCNNNNNNNGG 3 cut(s) 211, 491, 1718
BsmAI GTCTC 5 cut(s) 154, 803, 1139, 1146, 1507
BsmBI CGTCTC 3 cut(s) 803, 1139, 1146
BsmFI GGGAC 2 cut(s) 814, 927
BsmI GAATGC 3 cut(s) 179, 617, 787
BsnI GGCC 3 cut(s) 317, 351, 1717
Bsp119I TTCGAA 1 cut(s) 1390
Bsp1286I GDGCHC 3 cut(s) 8, 416, 715
Bsp1407I TGTACA 2 cut(s) 633, 1605
Bsp143I GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
BspACI CCGC 6 cut(s) 314, 806, 883, 885, 1696, 1734
BspANI GGCC 3 cut(s) 317, 351, 1717
BspCNI CTCAG 6 cut(s) 918, 1132, 1150, 1158, 1363, 1461
BspDI ATCGAT 1 cut(s) 948
BspFNI CGCG 4 cut(s) 47, 247, 536, 885
BspLI GGNNCC 2 cut(s) 159, 835
BspPI GGATC 2 cut(s) 152, 165
BspT104I TTCGAA 1 cut(s) 1390
BsrDI GCAATG 3 cut(s) 174, 713, 1049
BsrFI RCCGGY 1 cut(s) 857
BsrGI TGTACA 2 cut(s) 633, 1605
BsrI ACTGG 2 cut(s) 352, 1358
BssAI RCCGGY 1 cut(s) 857
BssECI CCNNGG 6 cut(s) 548, 883, 1056, 1250, 1578, 1712
BssMI GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
BssNI GRCGYC 1 cut(s) 812
BssT1I CCWWGG 2 cut(s) 548, 1578
Bst2UI CCWGG 2 cut(s) 1252, 1719
Bst4CI ACNGT 5 cut(s) 958, 1014, 1087, 1261, 1442
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 812
BstAPI GCANNNNNTGC 1 cut(s) 1048
BstAUI TGTACA 2 cut(s) 633, 1605
BstBI TTCGAA 1 cut(s) 1390
BstC8I GCNNGC 3 cut(s) 132, 1278, 1415
BstDEI CTNAG 9 cut(s) 384, 396, 576, 926, 1140, 1158, 1166, 1371, 1469
BstDSI CCRYGG 2 cut(s) 883, 1712
BstF5I GGATG 5 cut(s) 228, 558, 636, 1125, 1324
BstFNI CGCG 4 cut(s) 47, 247, 536, 885
BstHHI GCGC 2 cut(s) 49, 538
BstKTI GATC 6 cut(s) 160, 190, 251, 775, 1270, 1729
BstMAI GTCTC 5 cut(s) 154, 803, 1139, 1146, 1507
BstMBI GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
BstMWI GCNNNNNNNGC 3 cut(s) 308, 535, 1048
BstNI CCWGG 2 cut(s) 1252, 1719
BstNSI RCATGY 6 cut(s) 138, 458, 604, 741, 1417, 1495
BstSCI CCNGG 3 cut(s) 52, 1250, 1717
BstSLI GKGCMC 1 cut(s) 715
BstUI CGCG 4 cut(s) 47, 247, 536, 885
BstV1I GCAGC 4 cut(s) 81, 323, 601, 1051
BstX2I RGATCY 2 cut(s) 157, 1267
BstXI CCANNNNNNTGG 1 cut(s) 1642
BstYI RGATCY 2 cut(s) 157, 1267
Bsu15I ATCGAT 1 cut(s) 948
BsuRI GGCC 3 cut(s) 317, 351, 1717
BsuTUI ATCGAT 1 cut(s) 948
BtgI CCRYGG 2 cut(s) 883, 1712
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 5 cut(s) 228, 558, 636, 1125, 1324
BtsI GCAGTG 1 cut(s) 1572
BtsIMutI CAGTG 2 cut(s) 1365, 1572
Cac8I GCNNGC 3 cut(s) 132, 1278, 1415
CfoI GCGC 2 cut(s) 49, 538
Cfr10I RCCGGY 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 833
Cfr42I CCGCGG 1 cut(s) 886
ClaI ATCGAT 1 cut(s) 948
CseI GACGC 2 cut(s) 820, 1163
DdeI CTNAG 9 cut(s) 384, 396, 576, 926, 1140, 1158, 1166, 1371, 1469
DpnI GATC 6 cut(s) 159, 189, 250, 774, 1269, 1728
DpnII GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
EaeI YGGCCR 1 cut(s) 1715
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
EciI GGCGGA 1 cut(s) 821
Ecl136II GAGCTC 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 548, 1578
Eco24I GRGCYC 2 cut(s) 8, 416
Eco32I GATATC 2 cut(s) 123, 262
Eco47I GGWCC 1 cut(s) 833
Eco53kI GAGCTC 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 1250, 1717
EcoRV GATATC 2 cut(s) 123, 262
EcoT14I CCWWGG 2 cut(s) 548, 1578
EcoT38I GRGCYC 2 cut(s) 8, 416
ErhI CCWWGG 2 cut(s) 548, 1578
Esp3I CGTCTC 3 cut(s) 803, 1139, 1146
FaqI GGGAC 2 cut(s) 814, 927
FauI CCCGC 1 cut(s) 1727
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 5 cut(s) 95, 312, 315, 615, 1040
FokI GGATG 5 cut(s) 235, 565, 623, 1132, 1331
FriOI GRGCYC 2 cut(s) 8, 416
Fsp4HI GCNGC 5 cut(s) 95, 312, 315, 615, 1040
GlaI GCGC 2 cut(s) 48, 537
GluI GCNGC 5 cut(s) 95, 312, 315, 615, 1040
HaeIII GGCC 3 cut(s) 317, 351, 1717
HapII CCGG 3 cut(s) 54, 858, 1487
HgaI GACGC 2 cut(s) 820, 1163
HhaI GCGC 2 cut(s) 49, 538
Hin1I GRCGYC 1 cut(s) 812
Hin6I GCGC 2 cut(s) 47, 536
HinP1I GCGC 2 cut(s) 47, 536
HindIII AAGCTT 1 cut(s) 1274
HinfI GANTC 4 cut(s) 561, 1335, 1684, 1760
HpaII CCGG 3 cut(s) 54, 858, 1487
HphI GGTGA 3 cut(s) 1454, 1473, 1657
Hpy166II GTNNAC 3 cut(s) 25, 961, 1606
Hpy188I TCNGA 8 cut(s) 502, 519, 719, 844, 927, 1060, 1470, 1552
Hpy188III TCNNGA 3 cut(s) 296, 1668, 1757
Hpy8I GTNNAC 3 cut(s) 25, 961, 1606
Hpy99I CGWCG 1 cut(s) 1692
HpyAV CCTTC 5 cut(s) 1253, 1424, 1526, 1553, 1642
HpyCH4III ACNGT 5 cut(s) 958, 1014, 1087, 1261, 1442
HpyCH4IV ACGT 3 cut(s) 266, 871, 1657
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 535, 1048
HpyF3I CTNAG 9 cut(s) 384, 396, 576, 926, 1140, 1158, 1166, 1371, 1469
HpySE526I ACGT 3 cut(s) 266, 871, 1657
Hsp92I GRCGYC 1 cut(s) 812
HspAI GCGC 2 cut(s) 47, 536
Ksp22I TGATCA 1 cut(s) 772
KspI CCGCGG 1 cut(s) 886
Kzo9I GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
LmnI GCTCC 4 cut(s) 411, 659, 1060, 1454
Lsp1109I GCAGC 4 cut(s) 81, 323, 601, 1051
LweI GCATC 2 cut(s) 940, 1487
MaeII ACGT 3 cut(s) 266, 871, 1657
MaeIII GTNAC 6 cut(s) 253, 733, 929, 1360, 1611, 1691
MalI GATC 6 cut(s) 159, 189, 250, 774, 1269, 1728
MboI GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
MboII GAAGA 5 cut(s) 88, 355, 434, 556, 1238
MfeI CAATTG 2 cut(s) 367, 1380
MflI RGATCY 2 cut(s) 157, 1267
MhlI GDGCHC 3 cut(s) 8, 416, 715
MlyI GAGTC 1 cut(s) 1344
MroXI GAANNNNTTC 1 cut(s) 1464
MseI TTAA 7 cut(s) 825, 852, 893, 918, 1437, 1526, 1701
MslI CAYNNNNRTG 2 cut(s) 780, 1292
MspA1I CMGCKG 2 cut(s) 314, 885
MspI CCGG 3 cut(s) 54, 858, 1487
MspR9I CCNGG 3 cut(s) 54, 1252, 1719
MunI CAATTG 2 cut(s) 367, 1380
Mva1269I GAATGC 3 cut(s) 179, 617, 787
MvaI CCWGG 2 cut(s) 1252, 1719
MvnI CGCG 4 cut(s) 47, 247, 536, 885
MwoI GCNNNNNNNGC 3 cut(s) 308, 535, 1048
NciI CCSGG 1 cut(s) 54
NdeII GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
NlaIV GGNNCC 2 cut(s) 159, 835
NmuCI GTSAC 3 cut(s) 253, 733, 1360
NspI RCATGY 6 cut(s) 138, 458, 604, 741, 1417, 1495
NspV TTCGAA 1 cut(s) 1390
PaeI GCATGC 1 cut(s) 1417
PciI ACATGT 3 cut(s) 454, 737, 1491
PctI GAATGC 3 cut(s) 179, 617, 787
PdmI GAANNNNTTC 1 cut(s) 1464
PfeI GAWTC 3 cut(s) 561, 1684, 1760
PkrI GCNGC 5 cut(s) 96, 313, 316, 616, 1041
PleI GAGTC 1 cut(s) 1343
PpsI GAGTC 1 cut(s) 1343
PscI ACATGT 3 cut(s) 454, 737, 1491
PshBI ATTAAT 1 cut(s) 1701
Psp124BI GAGCTC 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 1657
Psp6I CCWGG 2 cut(s) 1250, 1717
PspGI CCWGG 2 cut(s) 1250, 1717
PspN4I GGNNCC 2 cut(s) 159, 835
PspPI GGNCC 1 cut(s) 833
PsuI RGATCY 2 cut(s) 157, 1267
RseI CAYNNNNRTG 2 cut(s) 780, 1292
SacI GAGCTC 1 cut(s) 416
SacII CCGCGG 1 cut(s) 886
SaqAI TTAA 7 cut(s) 825, 852, 893, 918, 1437, 1526, 1701
SatI GCNGC 5 cut(s) 95, 312, 315, 615, 1040
Sau3AI GATC 6 cut(s) 157, 187, 248, 772, 1267, 1726
Sau96I GGNCC 1 cut(s) 833
SchI GAGTC 1 cut(s) 1344
ScrFI CCNGG 3 cut(s) 54, 1252, 1719
SduI GDGCHC 3 cut(s) 8, 416, 715
SfaNI GCATC 2 cut(s) 940, 1487
Sfr303I CCGCGG 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 1390
SgrBI CCGCGG 1 cut(s) 886
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 780, 1292
SmlI CTYRAG 3 cut(s) 643, 1271, 1352
SmoI CTYRAG 3 cut(s) 643, 1271, 1352
SphI GCATGC 1 cut(s) 1417
SsiI CCGC 6 cut(s) 314, 806, 883, 885, 1696, 1734
SstI GAGCTC 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 52, 1250, 1717
StyI CCWWGG 2 cut(s) 548, 1578
TaaI ACNGT 5 cut(s) 958, 1014, 1087, 1261, 1442
TaiI ACGT 3 cut(s) 269, 874, 1660
TaqI TCGA 5 cut(s) 33, 559, 690, 948, 1390
TatI WGTACW 5 cut(s) 633, 1108, 1225, 1594, 1605
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 561, 1684, 1760
Tru1I TTAA 7 cut(s) 825, 852, 893, 918, 1437, 1526, 1701
Tru9I TTAA 7 cut(s) 825, 852, 893, 918, 1437, 1526, 1701
TscAI CASTG 2 cut(s) 1365, 1579
TseFI GTSAC 3 cut(s) 253, 733, 1360
TseI GCWGC 4 cut(s) 94, 311, 614, 1039
Tsp45I GTSAC 3 cut(s) 253, 733, 1360
TspDTI ATGAA 6 cut(s) 96, 266, 556, 1109, 1196, 1335
TspGWI ACGGA 2 cut(s) 170, 742
TspRI CASTG 2 cut(s) 1365, 1579
VpaK11BI GGWCC 1 cut(s) 833
VspI ATTAAT 1 cut(s) 1701
XapI RAATTY 2 cut(s) 291, 817
XceI RCATGY 6 cut(s) 138, 458, 604, 741, 1417, 1495
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 960
XmnI GAANNNNTTC 1 cut(s) 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.