Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Reverse (-)

56376123 .. 56377247

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCACTCAAAGGAGGAGGAAAACTACATCGAAATGAGCTCTCACCAAGATATAGATCATGCTGTCGAAAATGCTAACGTGCCAGCCGGAGAAGTAAATGTAACAAAGAAGAAATGGGAAAGAATGCTGCTTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTATGATTGCAGTCTCAATGGATCCTTTGTTTTTTTACATTGCATTCCTTGATCGTTATGAAATGTGCCTCGGAACGGACAAAAGGCTGAGGACCGCAGTCCTCATTACGCGATCACTCACAGATTTCACGTTCCTAGTTCATATCGTATACCAAATTCGTGAAGCTGTGAAAGCAGTGGCCTCTGTGTCCAAGCCCAAGCTGGTACAGAGAGGGAACTCAAAGCTCTTCAACAGGTTTGGACACGCCAAGGCAATAGCTAAGAAGTTATCATGGAGCTCTTTCCTAACTGACATTTTCGCTGTTCTTCCAATTCCACATGTGCTGATTTTAGTTCTGTTTTATGCCCCCAATTATGGATTTTCAGAGAACAAAATGACTCTGAATTACATGCGCGCAATATGTTCCAAGGATGTATCGGATCTTCATCTCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

203

Amino Acids

23.12

Weight (kDa)

9.08

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	2 cut(s)	283, 567
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	3 cut(s)	188, 201, 600
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	247, 527
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	1 cut(s)	403
AluBI	AGCT	6 cut(s)	42, 338, 373, 397, 431, 450
AluI	AGCT	6 cut(s)	42, 338, 373, 397, 431, 450
Alw21I	GWGCWC	2 cut(s)	44, 452
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	188, 201, 600
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	567, 569
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	44, 452
BarI	GAAGNNNNNNTAC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	44, 452
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	260
BsaBI	GATNNNNATC	2 cut(s)	57, 597
BsaJI	CCNNGG	3 cut(s)	241, 420, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 527
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	2 cut(s)	57, 597
BseDI	CCNNGG	3 cut(s)	241, 420, 579
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	2 cut(s)	57, 597
BseLI	CCNNNNNNNGG	2 cut(s)	247, 527
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	251
BsePI	GCGCGC	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	2 cut(s)	283, 567
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	44, 452
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	247, 527
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	2 cut(s)	132, 215
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	44, 452
Bsp143I	GATC	5 cut(s)	58, 193, 223, 284, 592
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	2 cut(s)	283, 567
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	188, 201, 600
BspQI	GCTCTTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	241, 420, 579
BssHII	GCGCGC	1 cut(s)	565
BssMI	GATC	5 cut(s)	58, 193, 223, 284, 592
BssNAI	GTATAC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	420, 579
Bst1107I	GTATAC	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	87, 168, 567
BstDEI	CTNAG	2 cut(s)	260, 432
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	2 cut(s)	283, 567
BstHHI	GCGC	2 cut(s)	567, 569
BstKTI	GATC	5 cut(s)	61, 196, 226, 287, 595
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	58, 193, 223, 284, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	3 cut(s)	174, 494, 565
BstPAI	GACNNNNGTC	1 cut(s)	269
BstUI	CGCG	2 cut(s)	283, 567
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	193, 592
BstYI	RGATCY	2 cut(s)	193, 592
BstZ17I	GTATAC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	87, 168, 567
CfoI	GCGC	2 cut(s)	567, 569
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	5 cut(s)	62, 171, 444, 491, 562
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	260, 432
DpnI	GATC	5 cut(s)	60, 195, 225, 286, 594
DpnII	GATC	5 cut(s)	58, 193, 223, 284, 592
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	42, 450
Eco130I	CCWWGG	2 cut(s)	420, 579
Eco24I	GRGCYC	2 cut(s)	44, 452
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	2 cut(s)	42, 450
EcoICRI	GAGCTC	2 cut(s)	42, 450
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	420, 579
EcoT38I	GRGCYC	2 cut(s)	44, 452
ErhI	CCWWGG	2 cut(s)	420, 579
FaeI	CATG	5 cut(s)	65, 174, 447, 494, 565
FatI	CATG	5 cut(s)	61, 170, 443, 490, 561
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	44, 452
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	566, 568
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	2 cut(s)	567, 569
Hin1II	CATG	5 cut(s)	65, 174, 447, 494, 565
Hin6I	GCGC	2 cut(s)	565, 567
HinP1I	GCGC	2 cut(s)	565, 567
HinfI	GANTC	2 cut(s)	4, 550
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	245, 538, 555, 592
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	81, 302
HpyCH4V	TGCA	3 cut(s)	170, 182, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	260, 432
HpySE526I	ACGT	2 cut(s)	81, 302
Hsp92II	CATG	5 cut(s)	65, 174, 447, 494, 565
HspAI	GCGC	2 cut(s)	565, 567
Kzo9I	GATC	5 cut(s)	58, 193, 223, 284, 592
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	447
LpnPI	CCDG	4 cut(s)	99, 103, 359, 391
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	81, 302
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	5 cut(s)	60, 195, 225, 286, 594
MboI	GATC	5 cut(s)	58, 193, 223, 284, 592
MboII	GAAGA	4 cut(s)	124, 391, 470, 587
MflI	RGATCY	2 cut(s)	193, 592
MhlI	GDGCHC	2 cut(s)	44, 452
MluCI	AATT	4 cut(s)	327, 483, 523, 556
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	7 cut(s)	10, 13, 251, 255, 284, 364, 377
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	90
Mva1269I	GAATGC	2 cut(s)	132, 215
MvnI	CGCG	2 cut(s)	283, 567
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	5 cut(s)	58, 193, 223, 284, 592
NlaIII	CATG	5 cut(s)	65, 174, 447, 494, 565
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	3 cut(s)	174, 494, 565
PauI	GCGCGC	1 cut(s)	565
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	404
PctI	GAATGC	2 cut(s)	132, 215
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PscI	ACATGT	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	269
Psp124BI	GAGCTC	2 cut(s)	44, 452
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	2 cut(s)	193, 592
PteI	GCGCGC	1 cut(s)	565
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	2 cut(s)	44, 452
SapI	GCTCTTC	1 cut(s)	404
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	5 cut(s)	58, 193, 223, 284, 592
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	544
SduI	GDGCHC	2 cut(s)	44, 452
SetI	ASST	9 cut(s)	44, 84, 305, 340, 375, 399, 410, 433, 452
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	4 cut(s)	327, 483, 523, 556
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	2 cut(s)	44, 452
StyI	CCWWGG	2 cut(s)	420, 579
TaiI	ACGT	2 cut(s)	84, 305
TaqI	TCGA	2 cut(s)	33, 69
TasI	AATT	4 cut(s)	327, 483, 523, 556
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	17, 132, 246, 302, 587
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	3 cut(s)	174, 494, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.