Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005424.1

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Reverse (-)

27533 .. 27877

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005424.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ctggagaacggtgatgtttatggagaagaacaacttctgagttgggcatcaccagccgacatgtcctatatctcttatgcagaccttcctatcttgaccgaaaatgtaaaatgtctttcagaggtagaaggctttgttctcactgccaaggacttgaaaaatgaagtctccgtgtacaagttacatgggaattacaatagttccagccatctagtggaggagatggaacgtgctatctcaagaggaacatcaatggttcgtcgtaactgcattaatcctaccccatggccaggcacagatcagggcgggaacgaggaaacagatattcaagattcaaataactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

114

Amino Acids

12.68

Weight (kDa)

4.36

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	287
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	214, 290
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	157, 329, 336
AjnI	CCWGG	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	23, 42
BalI	TGGCCA	1 cut(s)	289
BccI	CCATC	2 cut(s)	216, 217
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	147, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 290
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	147, 284
BseLI	CCNNNNNNNGG	2 cut(s)	214, 290
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	214, 290
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	147, 284
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	147, 284
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	61, 185, 285
CviJI	RGCY	4 cut(s)	56, 132, 207, 289
CviKI_1	RGCY	4 cut(s)	56, 132, 207, 289
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	147, 284
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	147, 284
ErhI	CCWWGG	2 cut(s)	147, 284
FaeI	CATG	3 cut(s)	64, 188, 288
FaiI	YATR	6 cut(s)	21, 62, 69, 78, 186, 286
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	3 cut(s)	60, 184, 284
FauI	CCCGC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	64, 188, 288
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	23, 42
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	39, 121
Hpy188III	TCNNGA	3 cut(s)	94, 240, 329
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	95, 122
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	80, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	64, 188, 288
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	66, 217, 276, 287, 303
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	180, 263
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	289
MluCI	AATT	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	289
MnlI	CCTC	4 cut(s)	115, 211, 236, 307
Mox20I	TGGCCA	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	289
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	64, 188, 288
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	214
PscI	ACATGT	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	3 cut(s)	87, 126, 232
SfaNI	GCATC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	147, 284
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	232
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.