Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008125

Physical Location & Seq

Genomic Coordinates Reverse (-)

56280901 .. 56281362

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATGAAAACGGGTTGAGACTGACCTGTGACTATCTCAAGCCAGTGACATACAATGAGAAAACAATTGTTTTTAGAATGGGAGAACCACTTGATAGCATGCTCCTAGTTCTGGAAGGCATCATGGTGATCTACACAACTAGTACTACTACTGATAGTAGTACTCTGGGAGAAATTACAGGTACCCCATCAACGGTCCACGGGTCCCTTGAGAATGGCAGTGTTTATGGACATGAACTTTTAAGTTGGGCATCACAAGACACGCCTGTAACTTATTCAACCCTTCCTATCTCGACCGGAAATGTGAAATGTCTGTCACAAGTAGAAGGGTTTGTCCTCTCGGCCAAGGACTTGAAAACTCTAGTTTCCAAGTACAAGTTACAATGGAATTACCTTAATTCCGACCATGTGGAGAGTAGTGGTGGAGCAGGTGCCTTCTATATCGAGAGCAGCGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

154

Amino Acids

16.66

Weight (kDa)

4.63

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008125)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36500 FvH4_4g04180
rosa_chinensis	RchiOBHm_Chr4g0394641 RchiOBHm_Chr4g0394671
rosa_laevigata	RLG00000009677 RLG00000009680 RLG00000009681 RLG00000009682
rosa_multiflora	Rmu_sc0005424.1_g000006 Rmu_sc0005424.1_g000007 Rmu_sc0006945.1_g000031 Rmu_sc0006945.1_g000032
rosa_roxburghii	Rroxscaffold_4G00304330 Rroxscaffold_5G00339680
rosa_rugosa	Rorug03G0362900.1 Rorug03G0363000.1 Rorug03G0363400.1
rosa_samantha	Rh4AG053500 Rh4AG054100 Rh4BG051500 Rh4BG051800
rosa_wichuraiana	Rw1G019920 Rw4G004170 Rw4G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	2 cut(s)	182, 431
AcoI	YGGCCR	1 cut(s)	342
AfaI	GTAC	4 cut(s)	145, 163, 184, 374
AfiI	CCNNNNNNNGG	2 cut(s)	112, 193
AgsI	TTSAA	2 cut(s)	279, 355
AhlI	ACTAGT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	196, 204
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	196, 204
BanI	GGYRCC	2 cut(s)	182, 431
BccI	CCATC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	107, 141, 362
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
BmcAI	AGTACT	2 cut(s)	145, 163
Bme18I	GGWCC	2 cut(s)	196, 204
BmgT120I	GGNCC	2 cut(s)	196, 204
BmiI	GGNNCC	4 cut(s)	184, 205, 206, 433
BmsI	GCATC	2 cut(s)	129, 260
BpuEI	CTTGAG	2 cut(s)	23, 230
BsaJI	CCNNGG	2 cut(s)	199, 345
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 193
Bse1I	ACTGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	199, 345
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	112, 193
BseNI	ACTGG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	182, 431
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	112, 193
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	344
BspLI	GGNNCC	4 cut(s)	184, 205, 206, 433
BspMI	ACCTGC	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	182, 431
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	199, 345
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	129
BstMCI	CGRYCG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	51, 226
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	196, 204
Csp6I	GTAC	4 cut(s)	144, 162, 183, 373
CviAII	CATG	4 cut(s)	100, 124, 233, 407
CviJI	RGCY	2 cut(s)	43, 344
CviKI_1	RGCY	2 cut(s)	43, 344
CviQI	GTAC	4 cut(s)	144, 162, 183, 373
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	196, 204
EcoO109I	RGGNCCY	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	103, 127, 236, 410
FaiI	YATR	7 cut(s)	52, 101, 125, 228, 234, 408, 441
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	99, 123, 232, 406
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	3 cut(s)	107, 141, 362
GluI	GCNGC	1 cut(s)	451
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	4 cut(s)	103, 127, 236, 410
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	113, 292, 445
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	110, 293, 320, 445
HpyCH4III	ACNGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	103, 127, 236, 410
KflI	GGGWCCC	1 cut(s)	204
KpnI	GGTACC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	108, 425
LpnPI	CCDG	8 cut(s)	40, 57, 98, 152, 165, 279, 310, 414
LweI	GCATC	2 cut(s)	129, 260
MaeI	CTAG	3 cut(s)	107, 141, 362
MaeIII	GTNAC	5 cut(s)	29, 46, 268, 315, 378
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	4 cut(s)	66, 174, 388, 397
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	242, 396, 460
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	66
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	4 cut(s)	103, 127, 236, 410
NlaIV	GGNNCC	4 cut(s)	184, 205, 206, 433
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	3 cut(s)	29, 46, 315
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	452
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
PspN4I	GGNNCC	4 cut(s)	184, 205, 206, 433
PspPI	GGNCC	2 cut(s)	196, 204
PspPPI	RGGWCCY	1 cut(s)	204
RsaI	GTAC	4 cut(s)	145, 163, 184, 374
RsaNI	GTAC	4 cut(s)	144, 162, 183, 373
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	242, 396, 460
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	196, 204
ScaI	AGTACT	2 cut(s)	145, 163
SetI	ASST	4 cut(s)	29, 184, 396, 433
SfaNI	GCATC	2 cut(s)	129, 260
SinI	GGWCC	2 cut(s)	196, 204
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	38, 209
SmoI	CTYRAG	2 cut(s)	38, 209
SpeI	ACTAGT	1 cut(s)	140
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	66, 174, 388, 397
SspMI	CTAG	3 cut(s)	107, 141, 362
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	293, 444
TasI	AATT	4 cut(s)	66, 174, 388, 397
TatI	WGTACW	3 cut(s)	143, 161, 372
Tru1I	TTAA	3 cut(s)	242, 396, 460
Tru9I	TTAA	3 cut(s)	242, 396, 460
TscAI	CASTG	2 cut(s)	51, 226
TseFI	GTSAC	3 cut(s)	29, 46, 315
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	3 cut(s)	29, 46, 315
TspDTI	ATGAA	2 cut(s)	21, 249
TspRI	CASTG	2 cut(s)	51, 226
VpaK11BI	GGWCC	2 cut(s)	196, 204
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	3 cut(s)	107, 141, 362
ZrmI	AGTACT	2 cut(s)	145, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.