Rmu_sc0006945.1_g000031

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006945.1
OG0008125
Physical Location & Seq
Reverse (-)
116020 .. 116364
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006945.1_g000031.1.cds

Sequence Viewer

Length: 345 bp
ctggagaacggtgatgtttatggagaagaacaacttctgagttgggcatcaccagccgacatgtcctatatctcttatgcagaccttcctatcttgaccgaaaatgtaaaatgtctttcagaggtagaaggctttgttctcactgccaaggacttgaaaaatgaagtctccgtgtacaagttacatgggaattacaatagttccagccatctagtggaggagatggaacgtgctatctcaggaggaacatcaatggttcgtcgtaaccgcattaatcctaccccatggccaggcacagatcagggcgggaacgaggaaacagatattcaagattcaaataactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

4.36

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 2 cut(s) 268, 306
AcoI YGGCCR 1 cut(s) 287
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 214, 290
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 157, 329, 336
AjnI CCWGG 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 172
AoxI GGCC 1 cut(s) 287
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 23, 42
BalI TGGCCA 1 cut(s) 289
BccI CCATC 2 cut(s) 216, 217
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 147, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 290
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 147, 284
BseLI CCNNNNNNNGG 2 cut(s) 214, 290
BseMII CTCAG 2 cut(s) 29, 252
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 214, 290
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 289
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 2 cut(s) 268, 306
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 30, 251
BsrGI TGTACA 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 147, 284
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 147, 284
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 38, 238
BstDSI CCRYGG 1 cut(s) 284
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 61, 185, 285
CviJI RGCY 4 cut(s) 56, 132, 207, 289
CviKI_1 RGCY 4 cut(s) 56, 132, 207, 289
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 38, 238
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 147, 284
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 147, 284
ErhI CCWWGG 2 cut(s) 147, 284
FaeI CATG 3 cut(s) 64, 188, 288
FaiI YATR 6 cut(s) 21, 62, 69, 78, 186, 286
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 3 cut(s) 60, 184, 284
FauI CCCGC 1 cut(s) 299
FspBI CTAG 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 3 cut(s) 64, 188, 288
HinfI GANTC 1 cut(s) 332
HphI GGTGA 2 cut(s) 23, 42
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 39, 121
Hpy188III TCNNGA 3 cut(s) 94, 240, 329
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 95, 122
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 38, 238
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 3 cut(s) 64, 188, 288
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 66, 217, 225, 276, 287, 303
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 180, 263
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 289
MluCI AATT 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 289
MnlI CCTC 4 cut(s) 115, 211, 236, 307
Mox20I TGGCCA 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 289
MseI TTAA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 284
NdeII GATC 1 cut(s) 298
NlaIII CATG 3 cut(s) 64, 188, 288
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 214
PscI ACATGT 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 291
SetI ASST 3 cut(s) 87, 126, 232
SfaNI GCATC 1 cut(s) 56
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 268, 306
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 147, 284
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 232
TaqII GACCGA 1 cut(s) 113
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 214
VspI ATTAAT 1 cut(s) 273
XceI RCATGY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.