RchiOBHm_Chr4g0399291

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015558
Physical Location & Seq
Reverse (-)
16467306 .. 16468151
846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGGAGATGCAACAACCAAAGCAGAGGCAGAGGAGGGTTCAGAGGCTAAGATGCTCTGTCATGAACTACGACTGGGGTAAGAAAGGCCGAGACTCTGTGGTGGGCAGGTTGTGTGCCTCCAATTCTCATTCTGAAATCGACCTAGAAAAGCCTTACGCTGAAATGTGGATGGGAACACATGACTCTGGACCCTCCTTTTTGATTGATCAGGATCTGAATAATAATAATAATAGCACCACTACTGGGTCATCTCCGTCTCTCAGAGACTGGGTTTCTAACAACCCTAATGACATGCTCGGTCACAAGGTTGTCCAAAAATGGGGCTCCTCTGATCTGCCTTTCTTGTTTAAGGTGCAATCCGTGGCAAAGGCATTGTCAATACAGGCACACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCAGATATTTACAAGGATGATAATTATAAGCCTGAGATGGCGCTGGCCTTGACACATTTTCAGGCTCTTTGTGGTTTTATCACTCTTGAGGAGCTTAAGAAGGTGATTGGTAATGTCCCTGAGATTGTAGAACTGGTTGGTAGTGAGGTCGAAAACCAATTGCTCCGCACGACCAAAGAAGATGGGGAGGATAAAGTCAAGTCTGTTATACGTTTGATTTTTGCCCAACTCATGTCAACTAACAAGGAAATTATAACCACAGTAACAACTAAATTGAAGAGTCGTTTACAGACGGAAAGCCAGGTAACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

247

Amino Acids

27.93

Weight (kDa)

7.72

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 13 - 169 9.7e-44 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 683
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 595
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 243, 319, 397
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Alw26I GTCTC 3 cut(s) 84, 258, 261
AlwI GGATC 1 cut(s) 219
AlwNI CAGNNNCTG 2 cut(s) 214, 267
AoxI GGCC 3 cut(s) 85, 405, 474
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 326
BccI CCATC 3 cut(s) 163, 460, 605
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 84, 258, 261
BfaI CTAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 473
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 325
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 3 cut(s) 82, 252, 277
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 3 cut(s) 82, 252, 277
BpuEI CTTGAG 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 360, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 319, 397
Bse1I ACTGG 4 cut(s) 77, 247, 272, 567
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 360, 408
BseGI GGATG 2 cut(s) 174, 451
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 243, 319, 397
BseMII CTCAG 3 cut(s) 274, 453, 540
BseNI ACTGG 4 cut(s) 77, 247, 272, 567
BseRI GAGGAG 3 cut(s) 46, 316, 533
BshFI GGCC 3 cut(s) 87, 407, 476
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 3 cut(s) 243, 319, 397
BsmAI GTCTC 3 cut(s) 84, 258, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 3 cut(s) 87, 407, 476
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 205, 211, 331
BspACI CCGC 1 cut(s) 595
BspANI GGCC 3 cut(s) 87, 407, 476
BspCNI CTCAG 3 cut(s) 273, 454, 541
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 190, 325
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 524
BsrI ACTGG 4 cut(s) 77, 247, 272, 567
BssECI CCNNGG 2 cut(s) 360, 408
BssMI GATC 3 cut(s) 205, 211, 331
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 1 cut(s) 701
BstAFI CTTAAG 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 47, 260, 462, 549
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 174, 451
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 208, 214, 334
BstMAI GTCTC 3 cut(s) 84, 258, 261
BstMBI GATC 3 cut(s) 205, 211, 331
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 87, 407, 476
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 174, 451
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 2 cut(s) 214, 267
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 4 cut(s) 61, 179, 292, 661
DdeI CTNAG 4 cut(s) 47, 260, 462, 549
DpnI GATC 3 cut(s) 207, 213, 333
DpnII GATC 3 cut(s) 205, 211, 331
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 4 cut(s) 64, 182, 295, 664
FaiI YATR 8 cut(s) 62, 180, 293, 428, 456, 638, 662, 683
FaqI GGGAC 1 cut(s) 530
FatI CATG 4 cut(s) 60, 178, 291, 660
FbaI TGATCA 1 cut(s) 205
FokI GGATG 2 cut(s) 181, 458
FriOI GRGCYC 1 cut(s) 326
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 3 cut(s) 87, 407, 476
HhaI GCGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 64, 182, 295, 664
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 3 cut(s) 92, 182, 709
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 666, 716
Hpy188I TCNGA 6 cut(s) 42, 133, 216, 263, 331, 743
Hpy188III TCNNGA 4 cut(s) 61, 186, 209, 515
Hpy8I GTNNAC 2 cut(s) 666, 716
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 3 cut(s) 10, 355, 418
HpyF3I CTNAG 4 cut(s) 47, 260, 462, 549
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 4 cut(s) 64, 182, 295, 664
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 211, 331
LmnI GCTCC 3 cut(s) 329, 520, 597
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 3 cut(s) 299, 691, 733
MalI GATC 3 cut(s) 207, 213, 333
MboI GATC 3 cut(s) 205, 211, 331
MboII GAAGA 2 cut(s) 620, 718
MfeI CAATTG 1 cut(s) 587
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 6 cut(s) 121, 401, 451, 587, 678, 701
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 3 cut(s) 86, 176, 718
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 2 cut(s) 348, 525
Msp20I TGGCCA 1 cut(s) 407
MspCI CTTAAG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 731
NdeII GATC 3 cut(s) 205, 211, 331
NlaIII CATG 4 cut(s) 64, 182, 295, 664
NlaIV GGNNCC 2 cut(s) 190, 325
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 295
PagI TCATGA 1 cut(s) 60
PleI GAGTC 3 cut(s) 86, 176, 717
PpsI GAGTC 3 cut(s) 86, 176, 717
PsiI TTATAA 2 cut(s) 456, 683
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 190, 325
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 214, 267
PsuI RGATCY 1 cut(s) 211
SaqAI TTAA 2 cut(s) 348, 525
Sau3AI GATC 3 cut(s) 205, 211, 331
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 3 cut(s) 86, 176, 718
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 326
SetI ASST 9 cut(s) 110, 144, 309, 354, 525, 534, 579, 643, 735
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 515, 524
SmoI CTYRAG 2 cut(s) 515, 524
Sse9I AATT 6 cut(s) 121, 401, 451, 587, 678, 701
SsiI CCGC 1 cut(s) 595
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 729
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 1 cut(s) 643
TaqI TCGA 2 cut(s) 138, 579
TaqII GACCGA 1 cut(s) 287
TasI AATT 6 cut(s) 121, 401, 451, 587, 678, 701
Tru1I TTAA 2 cut(s) 348, 525
Tru9I TTAA 2 cut(s) 348, 525
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 3 cut(s) 243, 349, 737
Vha464I CTTAAG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 295
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.