Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

21091445 .. 21094761

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAACCCACCCCTCAAACCTCCTCCAACTCACTCTCTTCGCTCAGCTCCCTCCTTCCCACGGCGGCCTCTCTGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCACCACCTCTCCCACTCCTTCCGCTCCTCCCGCAGTCCCACGCTAATCTTATCCTCTCCAACCCTTGTGAAGATGTATACGTTCAAGCTGTACATGATGCACACCAGCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

134

Amino Acids

15.03

Weight (kDa)

9.64

Isoelectric Point (pI)

81.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	6 cut(s)	64, 119, 146, 155, 321, 367
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	99, 338
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	3 cut(s)	47, 212, 232
AluI	AGCT	3 cut(s)	47, 212, 232
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	232, 286, 333
ApoI	RAATTY	2 cut(s)	99, 338
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	2 cut(s)	283, 397
AvaII	GGWCC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	219, 273, 345
BceAI	ACGGC	1 cut(s)	77
BcnI	CCSGG	2 cut(s)	283, 397
BfrI	CTTAAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	6 cut(s)	65, 119, 233, 287, 321, 334
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	6 cut(s)	66, 120, 234, 288, 322, 335
Bme1390I	CCNGG	2 cut(s)	283, 397
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	283, 397
BmsI	GCATC	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuMI	CCSGG	2 cut(s)	283, 397
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	3 cut(s)	12, 68, 140
BseXI	GCAGC	3 cut(s)	219, 273, 345
BshFI	GGCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	283, 396
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	358, 399
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	6 cut(s)	64, 119, 146, 155, 321, 367
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	358, 399
BssNAI	GTATAC	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	361, 402
BstMBI	GATC	2 cut(s)	358, 399
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 295, 342
BstSCI	CCNGG	2 cut(s)	281, 395
BstV1I	GCAGC	3 cut(s)	219, 273, 345
BstX2I	RGATCY	2 cut(s)	358, 399
BstYI	RGATCY	2 cut(s)	358, 399
BstZ17I	GTATAC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	6 cut(s)	47, 67, 212, 232, 286, 298
CviKI_1	RGCY	6 cut(s)	47, 67, 212, 232, 286, 298
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	2 cut(s)	360, 401
DpnII	GATC	2 cut(s)	358, 399
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	221
FaiI	YATR	3 cut(s)	202, 219, 242
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	65, 119, 233, 287, 321, 334
Fsp4HI	GCNGC	6 cut(s)	65, 119, 233, 287, 321, 334
GluI	GCNGC	6 cut(s)	65, 119, 233, 287, 321, 334
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	283, 396
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	283, 396
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	64, 152, 385
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 295, 342
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	358, 399
LmnI	GCTCC	2 cut(s)	52, 153
LpnPI	CCDG	5 cut(s)	242, 259, 296, 303, 392
Lsp1109I	GCAGC	3 cut(s)	219, 273, 345
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	204
MalI	GATC	2 cut(s)	360, 401
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	2 cut(s)	358, 399
MboII	GAAGA	3 cut(s)	29, 206, 376
MflI	RGATCY	2 cut(s)	358, 399
MluCI	AATT	3 cut(s)	99, 300, 338
MmeI	TCCRAC	2 cut(s)	50, 207
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	232
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	283, 396
MspR9I	CCNGG	2 cut(s)	283, 397
MwoI	GCNNNNNNNGC	3 cut(s)	154, 295, 342
NciI	CCSGG	2 cut(s)	283, 397
NdeII	GATC	2 cut(s)	358, 399
NlaIII	CATG	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	395
PkrI	GCNGC	6 cut(s)	66, 120, 234, 288, 322, 335
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	358, 399
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	6 cut(s)	65, 119, 233, 287, 321, 334
Sau3AI	GATC	2 cut(s)	358, 399
Sau96I	GGNCC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	283, 397
SetI	ASST	8 cut(s)	22, 49, 91, 133, 207, 214, 234, 374
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	99, 300, 338
SsiI	CCGC	6 cut(s)	64, 119, 146, 155, 321, 367
StyD4I	CCNGG	2 cut(s)	281, 395
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	237, 387
TasI	AATT	3 cut(s)	99, 300, 338
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	3 cut(s)	67, 121, 323
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	3 cut(s)	232, 286, 333
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	2 cut(s)	99, 338
XmiI	GTMKAC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.