RchiOBHm_Chr3g0452601

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009694
Physical Location & Seq
Forward (+)
3221001 .. 3221744
744 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGGCTTTGATAACCATCTGCAGCAATATATTGGCTGTCCTCCTGTACATGGTCACTGCAATGCTGTCCATTGGAACCTGTGGTTTTAGTCGCCACCTCACCCCAATCAATTCAGTCTTCCCAACAAATTTCACTCTGGAAGAGAGGCATCAGATGGTTGAAATGTCAAGAAATCGAGCAGAGTTAATGATGAACAATGCAGCCAATGATATAATACAAGCCCCTATTCTACCTGCTCTAGGCCATTACTACATAACGAGAATGATCATCGCCTCACAACTATATTCACCTAACTTACTGGTGGACACAGGCAGTGATGATACATGGGTTCAGGGATCAGGCTGCAGCAGCTGCTTCCCGGTCAAGATAGGAAATTTCAAATATAAAAATTCCTCATCATACAGCAAGTTACCATGTACACACCCACTTTGTGTTCCGAAAGTATGTTCTAGTGGTGGGCACTGTCTCTACAAGATCGCATCCTATGGTGGTGGCAGCAGTGAGGGTTGGGTTTCAAATGACACCTTCACTTTCTGGAGCAGTAGGCGAAAATTTATAAAGTACACAGCTGCATCTGTTTGTGGCTATGATAATAAGAACATCAGCTTTGGTAAAAATACAGGGAAGATAACTAGCATCTTTGGTTTAGGGGCGGGGCCCAGGTCCATGCTAATGCAACTAGCTTGTCAGACACATGGTCACTTCTCTTATTACTGCTTACCGCCATTGCCTGCACGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

247

Amino Acids

27.15

Weight (kDa)

9.13

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 240 1.4e-22 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 2 cut(s) 653, 722
AclWI GGATC 1 cut(s) 343
AcsI RAATTY 4 cut(s) 127, 373, 388, 551
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 3 cut(s) 47, 418, 563
AfiI CCNNNNNNNGG 2 cut(s) 49, 239
AgsI TTSAA 3 cut(s) 161, 379, 516
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 4 cut(s) 351, 569, 606, 683
AluI AGCT 4 cut(s) 351, 569, 606, 683
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 241, 656
ApaI GGGCCC 1 cut(s) 660
ApeKI GCWGC 8 cut(s) 21, 200, 342, 345, 348, 351, 495, 569
ApoI RAATTY 4 cut(s) 127, 373, 388, 551
AspS9I GGNCC 3 cut(s) 656, 657, 663
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 91, 279
AvaII GGWCC 1 cut(s) 663
BaeGI GKGCMC 2 cut(s) 462, 660
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanII GRGCYC 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BccI CCATC 2 cut(s) 23, 148
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 4 cut(s) 239, 450, 633, 680
BfmI CTRYAG 2 cut(s) 19, 343
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
BlsI GCNGC 8 cut(s) 23, 202, 344, 347, 350, 353, 497, 571
Bme1390I CCNGG 2 cut(s) 359, 661
Bme18I GGWCC 1 cut(s) 663
BmeRI GACNNNNNGTC 1 cut(s) 696
BmgT120I GGNCC 3 cut(s) 656, 657, 663
BmiI GGNNCC 3 cut(s) 76, 657, 658
BmrFI CCNGG 2 cut(s) 359, 661
BmsI GCATC 4 cut(s) 157, 488, 581, 645
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 239
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 66, 725
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 1 cut(s) 479
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 49, 239
BseMI GCAATG 2 cut(s) 66, 725
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 2 cut(s) 462, 660
BseXI GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 2 cut(s) 243, 658
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 49, 239
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 2 cut(s) 243, 658
Bsp120I GGGCCC 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 462, 660
Bsp1407I TGTACA 2 cut(s) 45, 416
Bsp143I GATC 3 cut(s) 264, 335, 474
BspACI CCGC 2 cut(s) 653, 722
BspANI GGCC 2 cut(s) 243, 658
BspLI GGNNCC 3 cut(s) 76, 657, 658
BspMAI CTGCAG 2 cut(s) 23, 347
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 66, 725
BsrGI TGTACA 2 cut(s) 45, 416
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 3 cut(s) 264, 335, 474
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 351
BstAUI TGTACA 2 cut(s) 45, 416
BstC8I GCNNGC 1 cut(s) 732
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 479
BstKTI GATC 3 cut(s) 267, 338, 477
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 264, 335, 474
BstMWI GCNNNNNNNGC 2 cut(s) 348, 351
BstNI CCWGG 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 357, 659
BstSFI CTRYAG 2 cut(s) 19, 343
BstSLI GKGCMC 2 cut(s) 462, 660
BstV1I GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 243, 658
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 479
BtsI GCAGTG 3 cut(s) 54, 319, 505
BtsIMutI CAGTG 4 cut(s) 54, 319, 460, 505
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 732
CaiI CAGNNNCTG 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 656, 657, 663
Csp6I GTAC 3 cut(s) 46, 417, 562
CviAII CATG 5 cut(s) 49, 324, 414, 667, 695
CviQI GTAC 3 cut(s) 46, 417, 562
DpnI GATC 3 cut(s) 266, 337, 476
DpnII GATC 3 cut(s) 264, 335, 474
DraIII CACNNNGTG 1 cut(s) 431
DriI GACNNNNNGTC 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 660
FaeI CATG 5 cut(s) 52, 327, 417, 670, 698
FatI CATG 5 cut(s) 48, 323, 413, 666, 694
FauI CCCGC 1 cut(s) 646
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
FspBI CTAG 4 cut(s) 239, 450, 633, 680
GluI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
GsuI CTGGAG 1 cut(s) 556
HaeIII GGCC 2 cut(s) 243, 658
HapII CCGG 1 cut(s) 359
Hin1II CATG 5 cut(s) 52, 327, 417, 670, 698
HpaII CCGG 1 cut(s) 359
HphI GGTGA 2 cut(s) 91, 279
Hpy166II GTNNAC 3 cut(s) 304, 419, 564
Hpy188I TCNGA 3 cut(s) 153, 438, 690
Hpy188III TCNNGA 4 cut(s) 137, 168, 364, 535
Hpy8I GTNNAC 3 cut(s) 304, 419, 564
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 7 cut(s) 21, 59, 200, 345, 572, 676, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 351
Hsp92II CATG 5 cut(s) 52, 327, 417, 670, 698
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 264, 335, 474
LmnI GCTCC 1 cut(s) 537
Lsp1109I GCAGC 8 cut(s) 33, 212, 329, 338, 357, 360, 507, 556
LweI GCATC 4 cut(s) 157, 488, 581, 645
MaeI CTAG 4 cut(s) 239, 450, 633, 680
MaeIII GTNAC 3 cut(s) 52, 408, 698
MalI GATC 3 cut(s) 266, 337, 476
MboI GATC 3 cut(s) 264, 335, 474
MboII GAAGA 3 cut(s) 109, 152, 637
MhlI GDGCHC 2 cut(s) 462, 660
MluCI AATT 5 cut(s) 109, 127, 373, 388, 551
MnlI CCTC 6 cut(s) 50, 107, 138, 283, 403, 496
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 3 cut(s) 59, 671, 739
MspA1I CMGCKG 2 cut(s) 351, 569
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 359, 661
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 2 cut(s) 348, 351
NciI CCSGG 1 cut(s) 359
NdeII GATC 3 cut(s) 264, 335, 474
NlaIII CATG 5 cut(s) 52, 327, 417, 670, 698
NlaIV GGNNCC 3 cut(s) 76, 657, 658
NmuCI GTSAC 2 cut(s) 52, 698
PkrI GCNGC 8 cut(s) 23, 202, 344, 347, 350, 353, 497, 571
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 76, 657, 658
PspOMI GGGCCC 1 cut(s) 656
PspPI GGNCC 3 cut(s) 656, 657, 663
PstI CTGCAG 2 cut(s) 23, 347
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 2 cut(s) 351, 569
RsaI GTAC 3 cut(s) 47, 418, 563
RsaNI GTAC 3 cut(s) 46, 417, 562
RseI CAYNNNNRTG 3 cut(s) 59, 671, 739
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 8 cut(s) 22, 201, 343, 346, 349, 352, 496, 570
Sau3AI GATC 3 cut(s) 264, 335, 474
Sau96I GGNCC 3 cut(s) 656, 657, 663
ScrFI CCNGG 2 cut(s) 359, 661
SduI GDGCHC 2 cut(s) 462, 660
SfaNI GCATC 4 cut(s) 157, 488, 581, 645
SfcI CTRYAG 2 cut(s) 19, 343
SinI GGWCC 1 cut(s) 663
SmiMI CAYNNNNRTG 3 cut(s) 59, 671, 739
Sse9I AATT 5 cut(s) 109, 127, 373, 388, 551
SsiI CCGC 2 cut(s) 653, 722
SspMI CTAG 4 cut(s) 239, 450, 633, 680
StyD4I CCNGG 2 cut(s) 357, 659
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 175
TasI AATT 5 cut(s) 109, 127, 373, 388, 551
TatI WGTACW 3 cut(s) 45, 416, 561
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 4 cut(s) 61, 319, 467, 505
TseFI GTSAC 2 cut(s) 52, 698
TseI GCWGC 8 cut(s) 21, 200, 342, 345, 348, 351, 495, 569
Tsp45I GTSAC 2 cut(s) 52, 698
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 4 cut(s) 61, 319, 467, 505
VpaK11BI GGWCC 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 4 cut(s) 127, 373, 388, 551
XspI CTAG 4 cut(s) 239, 450, 633, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.