Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006505

Physical Location & Seq

Genomic Coordinates Reverse (-)

6122657 .. 6126458

Gene Structure 3802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGACGGTGATTCGTGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGCGATGACGATATAAGGGAGGAGTTTCCATGCCCGTTTTGCTCTGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCATCCGGTGGAGGCAAAGAATGGGGTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTGCGCACATTACCCTACAACATGGAAATATATTCAAGATATCCTTCTCTTTTTATCAACTTTGTGGTTCAATGCAAATATTTTGGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCTAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTTTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAGCTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTTTGTCTGTCAAGGATAAGAAAGAGAAAGCAAAAAGATGTGAATTTGTTCAGGGGCTGTTGTTGTCCACCATCCCTGATGACGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

6.09

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	42 - 95	8.9e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	129 - 228	2.7e-37	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05700 AT3G05700 AT5G26990
fragaria_vesca	FvH4_6g07090
malus_domestica	MD04G1196200.v1.1 MD12G1209200.v1.1
prunus_persica	Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1 Prupe.6G316400_v2.0.a1
pyrus_communis	pycom04g17350 pycom12g19640
rosa_chinensis	RchiOBHm_Chr3g0456671 RchiOBHm_Chr4g0416281
rosa_laevigata	RLG00000025285
rosa_multiflora	Rmu_sc0000091.1_g000028 Rmu_sc0000133.1_g000030
rosa_roxburghii	Rroxscaffold_11G00450410 Rroxscaffold_6G00422550
rosa_rugosa	Rorug03G0014900
rosa_samantha	Rh1CG196600 Rh3AG075400 Rh3BG077300 Rh3CG077000 Rh3CG077100 Rh3DG079000
rosa_wichuraiana	Rw3G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	3 cut(s)	36, 57, 409
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	653
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	6 cut(s)	65, 95, 295, 330, 381, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	374, 406, 476, 558
AluI	AGCT	4 cut(s)	374, 406, 476, 558
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	667
Aor51HI	AGCGCT	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	406, 473
ApoI	RAATTY	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	3 cut(s)	23, 265, 348
AsuHPI	GGTGA	2 cut(s)	20, 597
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	376, 443
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	393, 485
BccI	CCATC	2 cut(s)	98, 689
BcoDI	GTCTC	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	2 cut(s)	407, 474
BlpI	GCTNAGC	1 cut(s)	559
BlsI	GCNGC	2 cut(s)	408, 475
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	2 cut(s)	196, 681
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	393, 485
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	3 cut(s)	227, 376, 443
Bsp143I	GATC	2 cut(s)	71, 478
Bsp1720I	GCTNAGC	1 cut(s)	559
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	3 cut(s)	36, 57, 409
BspPI	GGATC	1 cut(s)	473
BspQI	GCTCTTC	3 cut(s)	66, 186, 448
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	71, 478
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	8, 387
Bst6I	CTCTTC	3 cut(s)	66, 186, 448
BstDEI	CTNAG	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	196, 681
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 265, 348
BstKTI	GATC	2 cut(s)	74, 481
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	71, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	393, 485
BtgI	CCRYGG	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	196, 681
BtsIMutI	CAGTG	2 cut(s)	383, 532
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	3 cut(s)	23, 265, 348
CviAII	CATG	4 cut(s)	85, 135, 281, 508
CviJI	RGCY	9 cut(s)	374, 406, 441, 476, 512, 535, 558, 563, 667
CviKI_1	RGCY	9 cut(s)	374, 406, 441, 476, 512, 535, 558, 563, 667
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	2 cut(s)	73, 480
DpnII	GATC	2 cut(s)	71, 478
Eam1104I	CTCTTC	3 cut(s)	66, 186, 448
EarI	CTCTTC	3 cut(s)	66, 186, 448
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	2 cut(s)	376, 443
Eco32I	GATATC	1 cut(s)	300
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	376, 443
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	4 cut(s)	88, 138, 284, 511
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	4 cut(s)	84, 134, 280, 507
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	407, 474
FokI	GGATG	2 cut(s)	183, 668
FriOI	GRGCYC	2 cut(s)	376, 443
Fsp4HI	GCNGC	2 cut(s)	407, 474
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	3 cut(s)	22, 264, 347
GluI	GCNGC	2 cut(s)	407, 474
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	3 cut(s)	23, 265, 348
Hin1II	CATG	4 cut(s)	88, 138, 284, 511
Hin6I	GCGC	3 cut(s)	21, 263, 346
HinP1I	GCGC	3 cut(s)	21, 263, 346
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	20, 597
Hpy166II	GTNNAC	2 cut(s)	452, 678
Hpy188I	TCNGA	2 cut(s)	76, 151
Hpy188III	TCNNGA	2 cut(s)	69, 295
Hpy8I	GTNNAC	2 cut(s)	452, 678
HpyAV	CCTTC	2 cut(s)	313, 407
HpyCH4III	ACNGT	2 cut(s)	8, 387
HpyCH4V	TGCA	2 cut(s)	334, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	559
Hsp92II	CATG	4 cut(s)	88, 138, 284, 511
HspAI	GCGC	3 cut(s)	21, 263, 346
Kzo9I	GATC	2 cut(s)	71, 478
LguI	GCTCTTC	3 cut(s)	66, 186, 448
LmnI	GCTCC	2 cut(s)	18, 371
LpnPI	CCDG	4 cut(s)	213, 240, 460, 647
Lsp1109I	GCAGC	2 cut(s)	393, 485
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	47, 179, 603
MalI	GATC	2 cut(s)	73, 480
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	71, 478
MboII	GAAGA	4 cut(s)	53, 107, 203, 435
MhlI	GDGCHC	3 cut(s)	227, 376, 443
MluCI	AATT	2 cut(s)	99, 653
MnlI	CCTC	9 cut(s)	49, 118, 199, 234, 345, 390, 469, 546, 618
MroXI	GAANNNNTTC	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	71, 478
NlaIII	CATG	4 cut(s)	88, 138, 284, 511
NmuCI	GTSAC	2 cut(s)	179, 603
NsbI	TGCGCA	1 cut(s)	264
PciSI	GCTCTTC	3 cut(s)	66, 186, 448
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	408, 475
Psp124BI	GAGCTC	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	376
SapI	GCTCTTC	3 cut(s)	66, 186, 448
SatI	GCNGC	2 cut(s)	407, 474
Sau3AI	GATC	2 cut(s)	71, 478
SduI	GDGCHC	3 cut(s)	227, 376, 443
SetI	ASST	6 cut(s)	370, 376, 408, 478, 560, 610
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	99, 653
SsiI	CCGC	3 cut(s)	36, 57, 409
SspI	AATATT	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	8, 387
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	99, 653
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	390, 532
TseFI	GTSAC	2 cut(s)	179, 603
TseI	GCWGC	2 cut(s)	406, 473
Tsp45I	GTSAC	2 cut(s)	179, 603
TspDTI	ATGAA	3 cut(s)	73, 204, 225
TspGWI	ACGGA	2 cut(s)	376, 563
TspRI	CASTG	2 cut(s)	390, 532
XapI	RAATTY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.