Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005724

Physical Location & Seq

Genomic Coordinates Reverse (-)

15934275 .. 15938279

Gene Structure 4005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATCATGAAGCACACTTGCGCAAGAAGTTTGTCGACATGAAATCCCAAAGGGTGAAAGTGGAAGATTCATTTGCTCCTGCACTGGATGATGAAACCGAAACAATTGAGCACTTGCTTGCAGAACCTAAAACTGAATGTGTTACAGTAGATGGTGTCTTATGTTTTGGCAAGGAGAATGCAGAAAAATGCTTAAACTTTGATGATTTTTCTTCTGGATTTGACTATGGACTAAATACATATACTGGTGGGCGGCATTCTGCTCACCCTCGTGGGCCGCGTTCTGCTCATCCTCGCCAAGGAGATTATGAATTAGAACTTGGAGTTCTTGATGGATTGCTGGATGAAGTCGAAGAAGTGGAGGATATTCATGCAACAAATGGTCTTGCAAGTCCATGTGATGATTTTCTTCTAGATATTGGATTTACGGGGAAGGTTTCTGAACTGGAATTTGGTCCTTGTGAAAGATCACATCTTGGAAACTCTGAAAGTCGGTCTCCAGGGTTAAGTGGCAGTAGTAATAGTGCAGTAGGGGTTTCAGAATCGTCTACAGTGACAATTCAAGAATTTGAGTGCAAAAATCATTCTTGTCCCAACGAATCACCTCATAAGTTGCCTGGTGACTTCAGGCGGAAAAAAAGACGTCAGGCACCAGTTGAAGGAAGTACCTGCCCTAGTTCATTCAGTTTACAAAATCTTGAAGAGTTAGATAATAATCAGAAACCTGTAGTAAGTGGATTATTGTCCAGTGAAAATGAGAAGAGCTCCGTTGAAGGAAACAAAATTGGTGCTATTATTAAGAAGAAAAGACTGCCTAAGACTACTCGGAGACATGTTGAAGATTCGTCAAAAAGGAAAGCAAAAGATTTAATGGGAAGTGAAAATATTTCTCATCTTGCTGCTACAGATGATCAGTGCTTGAAGGCTAGATCTCAGAACAAACTTCATCATACAAGACCTATGACATTGTCGTCAGTTCCTGAGGAGGATTCAATTTCAGATAATCTGACGCTGTCTGAATTCAAGATTCGGATAGCACGTCCAAAGAAGCAGTACCCTTGGTCAGACCCAGGCAATTCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

361

Amino Acids

39.9

Weight (kDa)

5.59

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37025 AT2G37025 AT2G37025
fragaria_vesca	FvH4_6g16130 FvH4_6g16130 FvH4_6g16130 FvH4_6g16130
malus_domestica	MD04G1095600.v1.1 MD04G1095700.v1.1 MD12G1115600.v1.1
prunus_persica	Prupe.6G234700_v2.0.a1 Prupe.6G234700_v2.0.a1
pyrus_communis	pycom04g09040 pycom04g09050 pycom12g11500 pycom12g11510
rosa_chinensis	RchiOBHm_Chr3g0469971
rosa_laevigata	RLG00000024308
rosa_multiflora	Rmu_co8179602.1_g000001 Rmu_sc0007963.1_g000001 Rmu_sc0008347.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411330
rosa_rugosa	Rorug03G0105900
rosa_samantha	Rh3AG154800 Rh3BG178900 Rh3CG169500 Rh3DG196300
rosa_wichuraiana	Rw3G014580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	970
AatII	GACGTC	1 cut(s)	646
Acc16I	TGCGCA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	36, 548
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	253, 278, 631
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	449, 566, 1019
AcuI	CTGAAG	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	2 cut(s)	667, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	299, 659
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	8 cut(s)	563, 659, 701, 773, 839, 922, 993, 1024
AjiI	CACGTC	1 cut(s)	1040
AjnI	CCWGG	3 cut(s)	499, 616, 1069
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 435, 467
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	765
AluI	AGCT	1 cut(s)	765
Alw21I	GWGCWC	2 cut(s)	114, 767
Alw26I	GTCTC	2 cut(s)	501, 823
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	3 cut(s)	449, 566, 1019
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	275, 455
AsuHPI	GGTGA	4 cut(s)	67, 257, 594, 632
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	981
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	114, 767
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	2 cut(s)	146, 326
BciT130I	CCWGG	3 cut(s)	501, 618, 1071
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	501, 823
BfaI	CTAG	3 cut(s)	413, 675, 927
BfmI	CTRYAG	3 cut(s)	549, 726, 903
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	929
BisI	GCNGC	3 cut(s)	254, 278, 900
BlsI	GCNGC	3 cut(s)	255, 279, 901
Bme1390I	CCNGG	3 cut(s)	501, 618, 1071
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	275, 455
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	3 cut(s)	501, 618, 1071
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	643
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 659
Bse1I	ACTGG	5 cut(s)	90, 250, 450, 653, 747
Bse21I	CCTNAGG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	501, 618, 1071
BseDI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
BseGI	GGATG	3 cut(s)	94, 289, 349
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	299, 659
BseMII	CTCAG	2 cut(s)	947, 972
BseNI	ACTGG	5 cut(s)	90, 250, 450, 653, 747
BseRI	GAGGAG	1 cut(s)	998
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	2 cut(s)	66, 546
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	649
BsiHKAI	GWGCWC	2 cut(s)	114, 767
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	299, 659
BsmAI	GTCTC	2 cut(s)	501, 823
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	184, 256
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	114, 767
Bsp143I	GATC	4 cut(s)	4, 467, 910, 929
BspACI	CCGC	3 cut(s)	253, 278, 631
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	946, 973
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	5 cut(s)	90, 250, 450, 653, 747
BssECI	CCNNGG	4 cut(s)	298, 500, 1058, 1069
BssMI	GATC	4 cut(s)	4, 467, 910, 929
BssNI	GRCGYC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	298, 1058
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	3 cut(s)	501, 618, 1071
Bst4CI	ACNGT	2 cut(s)	148, 553
Bst6I	CTCTTC	2 cut(s)	696, 755
BstACI	GRCGYC	1 cut(s)	643
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	816, 933, 981
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	94, 289, 349
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	4 cut(s)	7, 470, 913, 932
BstMAI	GTCTC	2 cut(s)	501, 823
BstMBI	GATC	4 cut(s)	4, 467, 910, 929
BstNI	CCWGG	3 cut(s)	501, 618, 1071
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	3 cut(s)	499, 616, 1069
BstSFI	CTRYAG	3 cut(s)	549, 726, 903
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	886
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
Bsu36I	CCTNAGG	1 cut(s)	981
BsuRI	GGCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	1040
BtsCI	GGATG	3 cut(s)	94, 289, 349
BtsIMutI	CAGTG	4 cut(s)	83, 558, 754, 920
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	275, 455
CseI	GACGC	1 cut(s)	1018
Csp6I	GTAC	2 cut(s)	666, 1054
CviAII	CATG	5 cut(s)	8, 40, 371, 396, 833
CviJI	RGCY	3 cut(s)	277, 765, 926
CviKI_1	RGCY	3 cut(s)	277, 765, 926
CviQI	GTAC	2 cut(s)	666, 1054
DdeI	CTNAG	3 cut(s)	816, 933, 981
DpnI	GATC	4 cut(s)	6, 469, 912, 931
DpnII	GATC	4 cut(s)	4, 467, 910, 929
DrdI	GACNNNNNNGTC	1 cut(s)	970
DseDI	GACNNNNNNGTC	1 cut(s)	970
Eam1104I	CTCTTC	2 cut(s)	696, 755
EarI	CTCTTC	2 cut(s)	696, 755
EciI	GGCGGA	1 cut(s)	646
Ecl136II	GAGCTC	1 cut(s)	765
Eco130I	CCWWGG	2 cut(s)	298, 1058
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	610
Eco81I	CCTNAGG	1 cut(s)	981
EcoICRI	GAGCTC	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	1019
EcoRII	CCWGG	3 cut(s)	499, 616, 1069
EcoT14I	CCWWGG	2 cut(s)	298, 1058
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	2 cut(s)	298, 1058
FaeI	CATG	5 cut(s)	11, 43, 374, 399, 836
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	5 cut(s)	7, 39, 370, 395, 832
FbaI	TGATCA	1 cut(s)	910
FblI	GTMKAC	2 cut(s)	36, 548
Fnu4HI	GCNGC	3 cut(s)	254, 278, 900
FokI	GGATG	3 cut(s)	101, 276, 356
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	3 cut(s)	254, 278, 900
FspBI	CTAG	3 cut(s)	413, 675, 927
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	3 cut(s)	254, 278, 900
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	277
HgaI	GACGC	1 cut(s)	1018
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	643
Hin1II	CATG	5 cut(s)	11, 43, 374, 399, 836
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	6 cut(s)	68, 542, 599, 842, 989, 1027
HphI	GGTGA	4 cut(s)	67, 257, 594, 632
Hpy166II	GTNNAC	3 cut(s)	37, 549, 689
Hpy188III	TCNNGA	8 cut(s)	8, 216, 329, 413, 563, 698, 980, 1024
Hpy8I	GTNNAC	3 cut(s)	37, 549, 689
HpyAV	CCTTC	4 cut(s)	427, 653, 767, 916
HpyCH4III	ACNGT	2 cut(s)	148, 553
HpyCH4IV	ACGT	2 cut(s)	643, 1039
HpyCH4V	TGCA	7 cut(s)	83, 122, 182, 374, 389, 527, 576
HpyF3I	CTNAG	3 cut(s)	816, 933, 981
HpySE526I	ACGT	2 cut(s)	643, 1039
Hsp92I	GRCGYC	1 cut(s)	643
Hsp92II	CATG	5 cut(s)	11, 43, 374, 399, 836
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	4 cut(s)	4, 467, 910, 929
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	2 cut(s)	82, 770
Lsp1109I	GCAGC	1 cut(s)	886
MaeI	CTAG	3 cut(s)	413, 675, 927
MaeII	ACGT	2 cut(s)	643, 1039
MaeIII	GTNAC	3 cut(s)	142, 553, 620
MalI	GATC	4 cut(s)	6, 469, 912, 931
MboI	GATC	4 cut(s)	4, 467, 910, 929
MboII	GAAGA	8 cut(s)	77, 204, 365, 401, 713, 772, 814, 851
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	114, 767
MluCI	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
MnlI	CCTC	6 cut(s)	279, 303, 355, 615, 976, 979
MseI	TTAA	4 cut(s)	194, 506, 798, 869
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	3 cut(s)	501, 618, 1071
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	2 cut(s)	184, 256
MvaI	CCWGG	3 cut(s)	501, 618, 1071
MvnI	CGCG	1 cut(s)	280
NdeII	GATC	4 cut(s)	4, 467, 910, 929
NlaIII	CATG	5 cut(s)	11, 43, 374, 399, 836
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	2 cut(s)	553, 620
NsbI	TGCGCA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	7
PciI	ACATGT	1 cut(s)	832
PciSI	GCTCTTC	1 cut(s)	755
PcsI	WCGNNNNNNNCGW	2 cut(s)	277, 1036
PctI	GAATGC	2 cut(s)	184, 256
PfeI	GAWTC	6 cut(s)	68, 542, 599, 842, 989, 1027
PflFI	GACNNNGTC	2 cut(s)	967, 1012
PkrI	GCNGC	3 cut(s)	255, 279, 901
PscI	ACATGT	1 cut(s)	832
Psp124BI	GAGCTC	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	499, 616, 1069
PspGI	CCWGG	3 cut(s)	499, 616, 1069
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	275, 455
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	929
PsyI	GACNNNGTC	2 cut(s)	967, 1012
RsaI	GTAC	2 cut(s)	667, 1055
RsaNI	GTAC	2 cut(s)	666, 1054
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	767
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	4 cut(s)	194, 506, 798, 869
SatI	GCNGC	3 cut(s)	254, 278, 900
Sau3AI	GATC	4 cut(s)	4, 467, 910, 929
Sau96I	GGNCC	2 cut(s)	275, 455
ScrFI	CCNGG	3 cut(s)	501, 618, 1071
SduI	GDGCHC	2 cut(s)	114, 767
SetI	ASST	9 cut(s)	130, 438, 607, 646, 671, 727, 767, 961, 1042
SfcI	CTRYAG	3 cut(s)	549, 726, 903
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
SsiI	CCGC	3 cut(s)	253, 278, 631
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	413, 675, 927
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	3 cut(s)	499, 616, 1069
StyI	CCWWGG	2 cut(s)	298, 1058
TaaI	ACNGT	2 cut(s)	148, 553
TaiI	ACGT	2 cut(s)	646, 1042
TaqI	TCGA	2 cut(s)	36, 351
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	9 cut(s)	105, 311, 449, 558, 566, 783, 993, 1019, 1075
TauI	GCSGC	2 cut(s)	256, 280
TfiI	GAWTC	6 cut(s)	68, 542, 599, 842, 989, 1027
Tru1I	TTAA	4 cut(s)	194, 506, 798, 869
Tru9I	TTAA	4 cut(s)	194, 506, 798, 869
TscAI	CASTG	4 cut(s)	90, 558, 754, 920
TseFI	GTSAC	2 cut(s)	553, 620
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	2 cut(s)	553, 620
TspDTI	ATGAA	9 cut(s)	24, 56, 60, 108, 324, 359, 360, 669, 935
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	4 cut(s)	90, 558, 754, 920
Tth111I	GACNNNGTC	2 cut(s)	967, 1012
VpaK11BI	GGWCC	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	3 cut(s)	449, 566, 1019
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	36, 548
XspI	CTAG	3 cut(s)	413, 675, 927
ZraI	GACGTC	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.