RchiOBHm_Chr2g0093461

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011216
Physical Location & Seq
Reverse (-)
6746568 .. 6746996
429 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGATAGGGAGAGTTCACCATCACCTCTAAATCAAGCTTGTGCTTCTTGCAAGCACCAGAGAAAGAAATGTGACTCCAACTGTGAATTGGCACCATACTTTCCGGCGAACAAGTACCATGAGTTTCAGAACGCTCACAAACTTTTTGGCGTGAGCAACATACTGAAGATCATAGCCTCGATTGAACCACATAAAAGAAAAGCTGCTGCTGAATCCATACTCTTTGAAGGGAACGCTTGGAAGAGTGATCCTGTGCATGGTTGCCTTGGTGTGATCAAAGATCTGACAGCCCAGATGTCGTTTCATGAAAAACAACTCAGTGTTGTGAATCAACACCTAGCATTTCATAAGGAGCAGCAAAAGAAAAGGCAAGAACAAGATCAATCTGATTTTCTCAATGATGAGCTTCCTGATCTAGTAAGACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

142

Amino Acids

16.18

Weight (kDa)

7.7

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 110 2.7e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 185, 227
AluBI AGCT 3 cut(s) 38, 203, 406
AluI AGCT 3 cut(s) 38, 203, 406
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 203, 206, 355
AsuHPI GGTGA 2 cut(s) 9, 15
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 190, 193, 367
BccI CCATC 1 cut(s) 28
BclI TGATCA 1 cut(s) 273
BfaI CTAG 2 cut(s) 338, 416
BglII AGATCT 1 cut(s) 280
BisI GCNGC 3 cut(s) 204, 207, 356
BlsI GCNGC 3 cut(s) 205, 208, 357
BmiI GGNNCC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 331
BseXI GCAGC 3 cut(s) 190, 193, 367
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 257
Bsp143I GATC 6 cut(s) 168, 247, 273, 280, 379, 412
BspCNI CTCAG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 6 cut(s) 168, 247, 273, 280, 379, 412
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 6 cut(s) 171, 250, 276, 283, 382, 415
BstMBI GATC 6 cut(s) 168, 247, 273, 280, 379, 412
BstV1I GCAGC 3 cut(s) 190, 193, 367
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 304
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 119, 257, 305
CviJI RGCY 5 cut(s) 38, 176, 203, 290, 406
CviKI_1 RGCY 5 cut(s) 38, 176, 203, 290, 406
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 317
DpnI GATC 6 cut(s) 170, 249, 275, 282, 381, 414
DpnII GATC 6 cut(s) 168, 247, 273, 280, 379, 412
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 122, 260, 308
FaiI YATR 9 cut(s) 97, 120, 161, 173, 192, 218, 258, 306, 348
FatI CATG 3 cut(s) 118, 256, 304
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 204, 207, 356
Fsp4HI GCNGC 3 cut(s) 204, 207, 356
FspBI CTAG 2 cut(s) 338, 416
GluI GCNGC 3 cut(s) 204, 207, 356
HapII CCGG 1 cut(s) 104
Hin1II CATG 3 cut(s) 122, 260, 308
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 74, 212, 328
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 9, 15
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 129, 285, 388
Hpy188III TCNNGA 2 cut(s) 305, 410
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 51, 256
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 3 cut(s) 122, 260, 308
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 6 cut(s) 168, 247, 273, 280, 379, 412
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 71, 117, 264, 305, 423
Lsp1109I GCAGC 3 cut(s) 190, 193, 367
MaeI CTAG 2 cut(s) 338, 416
MaeIII GTNAC 1 cut(s) 71
MalI GATC 6 cut(s) 170, 249, 275, 282, 381, 414
MboI GATC 6 cut(s) 168, 247, 273, 280, 379, 412
MboII GAAGA 2 cut(s) 178, 253
MflI RGATCY 1 cut(s) 280
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 36, 187
MspI CCGG 1 cut(s) 104
NdeII GATC 6 cut(s) 168, 247, 273, 280, 379, 412
NlaIII CATG 3 cut(s) 122, 260, 308
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 304
PfeI GAWTC 2 cut(s) 212, 328
PkrI GCNGC 3 cut(s) 205, 208, 357
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SatI GCNGC 3 cut(s) 204, 207, 356
Sau3AI GATC 6 cut(s) 168, 247, 273, 280, 379, 412
SchI GAGTC 1 cut(s) 68
SetI ASST 5 cut(s) 28, 40, 205, 339, 408
Sse9I AATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 338, 416
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 86
TfiI GAWTC 2 cut(s) 212, 328
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 3 cut(s) 203, 206, 355
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 293, 321, 335
TspRI CASTG 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 2 cut(s) 338, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.