Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

25603998 .. 25608641

Gene Structure 4644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTTATGGGCTTCAAGCCCGAGCAAATTACGATTCAGTTTCGATATCCTGGATTACAGGTTTGTTTATGAGAGCCTCGACTTCGACTCCATCAGTGGCCAGGACTTCGCATTGGAAGACGGCGCCACCTTCTGCTCCGCCTACCCCTTCTCCGGCGTCGCCGAGAACCTCGTCCTCCAGGAGAAGCTCTCGCATTACTTGGACCCAGAAGACCCAGAACTGTGTTGTTGGAGACACCCAGAGCTAGAAAATGGGGCCGACGATATCACTGTCGGAGCAGTGCACAGACAACAAAAAGACAAGGTTGTGGTACTGGAGGTGACGACTATGTCACGAAGTGTGCCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

4.61

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	123, 156
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	3 cut(s)	48, 99, 177
AluBI	AGCT	2 cut(s)	187, 244
AluI	AGCT	2 cut(s)	187, 244
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	2 cut(s)	97, 255
ApaLI	GTGCAC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	202, 255
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	123, 216
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	50, 101, 179
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	126
Bme1390I	CCNGG	3 cut(s)	50, 101, 179
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	202, 255
BmiI	GGNNCC	3 cut(s)	124, 204, 256
BmrFI	CCNGG	3 cut(s)	50, 101, 179
BpiI	GAAGAC	2 cut(s)	123, 216
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	161, 335
BsaHI	GRCGYC	2 cut(s)	123, 156
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	50, 101, 179
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	99, 257
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	99, 257
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	99, 257
BspLI	GGNNCC	3 cut(s)	124, 204, 256
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	123, 156
Bst2UI	CCWGG	3 cut(s)	50, 101, 179
Bst4CI	ACNGT	2 cut(s)	222, 271
BstACI	GRCGYC	2 cut(s)	123, 156
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	226
BstNI	CCWGG	3 cut(s)	50, 101, 179
BstSCI	CCNGG	3 cut(s)	48, 99, 177
BstSLI	GKGCMC	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	123, 216
BsuRI	GGCC	2 cut(s)	99, 257
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	100, 267, 285
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	202, 255
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	311
CviJI	RGCY	7 cut(s)	11, 18, 75, 99, 187, 244, 257
CviKI_1	RGCY	7 cut(s)	11, 18, 75, 99, 187, 244, 257
CviQI	GTAC	1 cut(s)	311
DinI	GGCGCC	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	338
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	127
Eco32I	GATATC	2 cut(s)	46, 265
Eco47I	GGWCC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	48, 99, 177
EcoRV	GATATC	2 cut(s)	46, 265
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaiI	YATR	3 cut(s)	7, 69, 329
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	161, 335
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	99, 257
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	2 cut(s)	123, 156
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	2 cut(s)	33, 86
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	161, 263
HpyAV	CCTTC	2 cut(s)	139, 157
HpyCH4III	ACNGT	2 cut(s)	222, 271
HpyCH4V	TGCA	1 cut(s)	283
Hsp92I	GRCGYC	2 cut(s)	123, 156
HspAI	GCGC	1 cut(s)	123
KasI	GGCGCC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	140, 275
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	319, 330
MboII	GAAGA	2 cut(s)	128, 221
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	209, 253
MnlI	CCTC	4 cut(s)	86, 179, 185, 310
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	3 cut(s)	50, 101, 179
MvaI	CCWGG	3 cut(s)	50, 101, 179
NarI	GGCGCC	1 cut(s)	123
NlaIV	GGNNCC	3 cut(s)	124, 204, 256
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	319, 330
PfeI	GAWTC	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	328
PfoI	TCCNGGA	2 cut(s)	48, 177
PleI	GAGTC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	48, 99, 177
PspGI	CCWGG	3 cut(s)	48, 99, 177
PspN4I	GGNNCC	3 cut(s)	124, 204, 256
PspPI	GGNCC	2 cut(s)	202, 255
PsyI	GACNNNGTC	1 cut(s)	328
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
Sau96I	GGNCC	2 cut(s)	202, 255
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	50, 101, 179
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	62, 131, 171, 189, 246, 306, 321
SfoI	GGCGCC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	138
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	48, 99, 177
TaaI	ACNGT	2 cut(s)	222, 271
TaqI	TCGA	3 cut(s)	42, 78, 84
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	3 cut(s)	100, 274, 285
TseFI	GTSAC	2 cut(s)	319, 330
Tsp45I	GTSAC	2 cut(s)	319, 330
TspRI	CASTG	3 cut(s)	100, 274, 285
Tth111I	GACNNNGTC	1 cut(s)	328
VneI	GTGCAC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	202
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.