Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

64597225 .. 64598570

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGATAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACTAAAGACAGGTCTATGATAATTGGGATTTTGTGTATTATCTTCAATATCATTATGTATGCATCACCCTTAACAGTCATGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATGTTCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTATGGCACTTACTACAGAACCACTAACTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

8.49

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	65 - 148	6.4e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	450
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	122, 220, 488
AjnI	CCWGG	1 cut(s)	405
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	16, 403
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	6, 403
AsuHPI	GGTGA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	112
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 403
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	407
BseGI	GGATG	2 cut(s)	31, 460
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	2 cut(s)	35, 341
BshFI	GGCC	2 cut(s)	18, 405
BsiHKAI	GWGCWC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	18, 405
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	57, 392
BspANI	GGCC	2 cut(s)	18, 405
BspHI	TCATGA	1 cut(s)	252
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	455
BssMI	GATC	2 cut(s)	57, 392
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	70, 309
BstF5I	GGATG	2 cut(s)	31, 460
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	60, 395
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	57, 392
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	18, 405
BtsCI	GGATG	2 cut(s)	31, 460
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	70, 309
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	6, 403
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	253, 289
CviJI	RGCY	4 cut(s)	18, 72, 405, 472
CviKI_1	RGCY	4 cut(s)	18, 72, 405, 472
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	2 cut(s)	59, 394
DpnII	GATC	2 cut(s)	57, 392
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	2 cut(s)	256, 292
FatI	CATG	2 cut(s)	252, 288
FokI	GGATG	2 cut(s)	18, 467
GlaI	GCGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	18, 405
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	256, 292
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	35, 253, 268
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	236, 321, 347, 412
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	256, 292
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	57, 392
LguI	GCTCTTC	1 cut(s)	117
LpnPI	CCDG	9 cut(s)	48, 54, 101, 169, 319, 392, 419, 436, 492
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	59, 394
MboI	GATC	2 cut(s)	57, 392
MboII	GAAGA	3 cut(s)	67, 104, 208
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	3 cut(s)	56, 311, 362
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
NdeII	GATC	2 cut(s)	57, 392
NlaIII	CATG	2 cut(s)	256, 292
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	6, 403
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	57, 392
Sau96I	GGNCC	2 cut(s)	6, 403
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	3 cut(s)	165, 188, 481
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	81, 94
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	67, 269, 480
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.