RchiOBHm_Chr2g0169401

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011602
Physical Location & Seq
Forward (+)
83613213 .. 83620144
6932 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1293 bp
ATGGACTTGGCTGCAGAGATAGGAAGAAGTGTCAGGACCTCGTTTCGTGAGCATGCATCGAGTTTCAGGAGCACTGCAGATGTAAGGTCCATAAAGAAGAATGAAGACGATGAAGTAGAGCTGCAGTGGGCCGCCATTGAGAGGTTGCCAACGTTTGAGCGCATTAGGACTTCATTGTTTGATTGCAGCAAAGATGAGAAGGAAGATGAGGCTAGTAACAAGAGTAAGATGGCACAGATTGATGTGTCGAAGCTAGGATCAATGGAGAGGCATGTGGTCATTCAGAAGTTGATCAAGGAAATTGAGGGAGATAACCACCGGCTCTTGCAGAAACTCAGAGAAAGAATAGACAGAGTAGGACTGCAACTGCCGACTGTGGAAGTTCGATACCAGAATTTGTTAGTAGAAGCAGAATATGAAGTAGTTCAAGGAAAACCTCTCCCTACACTATGGAACACCGTTAAAAGCTTATTCTCTATAGTTGGGTGCAAGCCTCAAGCATACAAGCTAGAAATTCTCAGAGATATCAGTGGCATCATCAAACCATCAAGGTTAGAATTTACGAAAATGCGCTTGATAAAATCGGTTTTTTCTATTTGCTTGACAAGAGTTTATGGGGTTGCATTTACTTACTGCCTTACTGGTCTCAATTTGTATAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAATCCACTTTATTACAGGCGCTTGCAGGGAAACTTAACCATTCTCTCAAGGTCCGGGGAAATGTAACCTACAATGGTTATAAGCTCAATGAGTTTGTTCCACAGAAGACATCAGCTTATATAAGTCAATATGACTTGCACATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCGCAGCACGCTGTCAGGGTATTGGAAGCAGAGCAGGTGCCCTATTTTCTTCACATCTTATGGCCATAGTCATATTCCATAAAACTAGATTTAACTTGGAAGCTGTTGCAACAACAGATATAATGAAAGAAGTCACCAGAAGGGAGAAGCAAGAAGGAATTGTCCCAGATTCAGATATTGATACTTATATGAAGATCCTTGGGCTAGACATGTGTGCTGAGACAATTGTAGGAGATCCAATGCAAAGAGGAATTTCGGGTGGCCAAAAGAAAAGACTAACAACAGGGGAAATGATGATTGGTCCAGCAAGAGCTTTCTTTATGGACGAGATATCTGATGGGCAGTCCCTCCTTAATGGAGGAGGAAATCCATGTGGTGATTTACCACATGAGGAATGCATGGGTTGGAATATTCAAAGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

430

Amino Acids

48.39

Weight (kDa)

8.6

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 220 - 399 1.1e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AarI CACCTGC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 905
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 1 cut(s) 132
AclI AACGTT 1 cut(s) 152
AclWI GGATC 3 cut(s) 265, 1057, 1097
AcoI YGGCCR 2 cut(s) 930, 1129
AcsI RAATTY 4 cut(s) 394, 513, 557, 1119
AfiI CCNNNNNNNGG 2 cut(s) 141, 689
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 2 cut(s) 428, 1283
AjnI CCWGG 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1149, 1181
AluBI AGCT 8 cut(s) 121, 253, 468, 508, 778, 809, 971, 1181
AluI AGCT 8 cut(s) 121, 253, 468, 508, 778, 809, 971, 1181
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 650, 1082
AlwI GGATC 3 cut(s) 265, 1057, 1097
AoxI GGCC 4 cut(s) 129, 676, 930, 1129
ApeKI GCWGC 4 cut(s) 11, 121, 186, 872
ApoI RAATTY 4 cut(s) 394, 513, 557, 1119
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 3 cut(s) 162, 573, 715
AspS9I GGNCC 6 cut(s) 36, 87, 129, 677, 745, 1169
AsuC2I CCSGG 1 cut(s) 749
AsuHPI GGTGA 2 cut(s) 994, 1256
AvaII GGWCC 4 cut(s) 36, 87, 745, 1169
BaeGI GKGCMC 1 cut(s) 910
BalI TGGCCA 2 cut(s) 932, 1131
BanI GGYRCC 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 111, 806
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 108, 198, 884
BccI CCATC 3 cut(s) 223, 553, 1199
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 1 cut(s) 749
BcoDI GTCTC 2 cut(s) 650, 1082
BfaI CTAG 5 cut(s) 213, 254, 509, 954, 1073
BfmI CTRYAG 4 cut(s) 12, 75, 122, 477
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 893
BglI GCCNNNNNGGC 1 cut(s) 684
BisI GCNGC 5 cut(s) 12, 122, 132, 187, 873
BlsI GCNGC 5 cut(s) 13, 123, 133, 188, 874
Bme1390I CCNGG 2 cut(s) 684, 749
Bme18I GGWCC 4 cut(s) 36, 87, 745, 1169
BmgT120I GGNCC 6 cut(s) 36, 87, 129, 677, 745, 1169
BmiI GGNNCC 1 cut(s) 907
BmrFI CCNGG 2 cut(s) 684, 749
BmsI GCATC 2 cut(s) 65, 543
BpiI GAAGAC 2 cut(s) 111, 806
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 480, 725
BpuMI CCSGG 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 748, 1066
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 689
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 2 cut(s) 646, 867
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 748, 1066
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 141, 689
BseMII CTCAG 3 cut(s) 349, 532, 1077
BseNI ACTGG 2 cut(s) 646, 867
BseRI GAGGAG 1 cut(s) 1242
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 3 cut(s) 108, 198, 884
BshFI GGCC 4 cut(s) 131, 678, 932, 1131
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 319, 748
BslFI GGGAC 2 cut(s) 1016, 1198
BslI CCNNNNNNNGG 2 cut(s) 141, 689
BsmAI GTCTC 2 cut(s) 650, 1082
BsmFI GGGAC 2 cut(s) 1016, 1198
BsmI GAATGC 1 cut(s) 1268
BsnI GGCC 4 cut(s) 131, 678, 932, 1131
Bso31I GGTCTC 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 74, 910
Bsp143I GATC 4 cut(s) 257, 291, 1062, 1102
BspACI CCGC 1 cut(s) 132
BspANI GGCC 4 cut(s) 131, 678, 932, 1131
BspCNI CTCAG 3 cut(s) 348, 531, 1078
BspLI GGNNCC 1 cut(s) 907
BspMAI CTGCAG 3 cut(s) 16, 79, 126
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 3 cut(s) 265, 1057, 1097
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 650
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 2 cut(s) 646, 867
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 748, 1066
BssMI GATC 4 cut(s) 257, 291, 1062, 1102
BssT1I CCWWGG 1 cut(s) 1066
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 376, 460, 850
BstC8I GCNNGC 4 cut(s) 54, 491, 717, 877
BstDEI CTNAG 3 cut(s) 335, 518, 1086
BstF5I GGATG 1 cut(s) 666
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 3 cut(s) 162, 573, 715
BstKTI GATC 4 cut(s) 260, 294, 1065, 1105
BstMAI GTCTC 2 cut(s) 650, 1082
BstMBI GATC 4 cut(s) 257, 291, 1062, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 684
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 3 cut(s) 56, 275, 1081
BstSCI CCNGG 2 cut(s) 682, 747
BstSFI CTRYAG 4 cut(s) 12, 75, 122, 477
BstSLI GKGCMC 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 108, 198, 884
BstV2I GAAGAC 2 cut(s) 111, 806
BstX2I RGATCY 2 cut(s) 1062, 1102
BstYI RGATCY 2 cut(s) 1062, 1102
BsuRI GGCC 4 cut(s) 131, 678, 932, 1131
BtsCI GGATG 1 cut(s) 666
BtsI GCAGTG 2 cut(s) 72, 131
BtsIMutI CAGTG 4 cut(s) 72, 131, 535, 860
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 4 cut(s) 54, 491, 717, 877
CfoI GCGC 3 cut(s) 162, 573, 715
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 6 cut(s) 36, 87, 129, 677, 745, 1169
CviAII CATG 6 cut(s) 53, 272, 1078, 1239, 1256, 1267
DdeI CTNAG 3 cut(s) 335, 518, 1086
DpnI GATC 4 cut(s) 259, 293, 1064, 1104
DpnII GATC 4 cut(s) 257, 291, 1062, 1102
EaeI YGGCCR 2 cut(s) 930, 1129
Eco130I CCWWGG 1 cut(s) 1066
Eco31I GGTCTC 1 cut(s) 650
Eco32I GATATC 2 cut(s) 526, 1200
Eco47I GGWCC 4 cut(s) 36, 87, 745, 1169
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 682
EcoRV GATATC 2 cut(s) 526, 1200
EcoT14I CCWWGG 1 cut(s) 1066
EcoT22I ATGCAT 2 cut(s) 58, 1268
ErhI CCWWGG 1 cut(s) 1066
FaeI CATG 6 cut(s) 56, 275, 1081, 1242, 1259, 1270
FaqI GGGAC 2 cut(s) 1016, 1198
FatI CATG 6 cut(s) 52, 271, 1077, 1238, 1255, 1266
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 12, 122, 132, 187, 873
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 5 cut(s) 12, 122, 132, 187, 873
FspBI CTAG 5 cut(s) 213, 254, 509, 954, 1073
GlaI GCGC 3 cut(s) 161, 572, 714
GluI GCNGC 5 cut(s) 12, 122, 132, 187, 873
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 4 cut(s) 131, 678, 932, 1131
HapII CCGG 2 cut(s) 319, 748
HhaI GCGC 3 cut(s) 162, 573, 715
Hin1II CATG 6 cut(s) 56, 275, 1081, 1242, 1259, 1270
Hin6I GCGC 3 cut(s) 160, 571, 713
HinP1I GCGC 3 cut(s) 160, 571, 713
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 2 cut(s) 664, 1037
HpaII CCGG 2 cut(s) 319, 748
HphI GGTGA 2 cut(s) 994, 1256
Hpy188I TCNGA 6 cut(s) 285, 338, 521, 841, 1042, 1204
Hpy188III TCNNGA 3 cut(s) 34, 47, 67
HpyAV CCTTC 4 cut(s) 193, 1002, 1016, 1281
HpyCH4III ACNGT 3 cut(s) 376, 460, 850
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 684
HpyF3I CTNAG 3 cut(s) 335, 518, 1086
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 6 cut(s) 56, 275, 1081, 1242, 1259, 1270
HspAI GCGC 3 cut(s) 160, 571, 713
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 4 cut(s) 257, 291, 1062, 1102
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 3 cut(s) 108, 198, 884
LweI GCATC 2 cut(s) 65, 543
MaeI CTAG 5 cut(s) 213, 254, 509, 954, 1073
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 215, 757, 1000
MalI GATC 4 cut(s) 259, 293, 1064, 1104
MboI GATC 4 cut(s) 257, 291, 1062, 1102
MboII GAAGA 7 cut(s) 36, 109, 116, 215, 811, 909, 1072
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 1062, 1102
MhlI GDGCHC 2 cut(s) 74, 910
MlsI TGGCCA 2 cut(s) 932, 1131
MluCI AATT 8 cut(s) 300, 394, 513, 557, 649, 1026, 1092, 1119
MluNI TGGCCA 2 cut(s) 932, 1131
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 1253
Mox20I TGGCCA 2 cut(s) 932, 1131
Mph1103I ATGCAT 2 cut(s) 58, 1268
MroXI GAANNNNTTC 1 cut(s) 423
MscI TGGCCA 2 cut(s) 932, 1131
MseI TTAA 4 cut(s) 462, 729, 960, 1221
Msp20I TGGCCA 2 cut(s) 932, 1131
MspI CCGG 2 cut(s) 319, 748
MspR9I CCNGG 2 cut(s) 684, 749
MunI CAATTG 1 cut(s) 1092
Mva1269I GAATGC 1 cut(s) 1268
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 684
NciI CCSGG 1 cut(s) 749
NdeII GATC 4 cut(s) 257, 291, 1062, 1102
NlaIII CATG 6 cut(s) 56, 275, 1081, 1242, 1259, 1270
NlaIV GGNNCC 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 1000
NsiI ATGCAT 2 cut(s) 58, 1268
NspI RCATGY 3 cut(s) 56, 275, 1081
PaeI GCATGC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 893
PciI ACATGT 1 cut(s) 1077
PctI GAATGC 1 cut(s) 1268
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 1037
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 5 cut(s) 13, 123, 133, 188, 874
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 36
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 774
Psp1406I AACGTT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 907
PspPI GGNCC 6 cut(s) 36, 87, 129, 677, 745, 1169
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 3 cut(s) 16, 79, 126
PsuI RGATCY 2 cut(s) 1062, 1102
SaqAI TTAA 4 cut(s) 462, 729, 960, 1221
SatI GCNGC 5 cut(s) 12, 122, 132, 187, 873
Sau3AI GATC 4 cut(s) 257, 291, 1062, 1102
Sau96I GGNCC 6 cut(s) 36, 87, 129, 677, 745, 1169
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 684, 749
SduI GDGCHC 2 cut(s) 74, 910
SfaNI GCATC 2 cut(s) 65, 543
SfcI CTRYAG 4 cut(s) 12, 75, 122, 477
SinI GGWCC 4 cut(s) 36, 87, 745, 1169
SmlI CTYRAG 2 cut(s) 495, 740
SmoI CTYRAG 2 cut(s) 495, 740
SphI GCATGC 1 cut(s) 56
Sse9I AATT 8 cut(s) 300, 394, 513, 557, 649, 1026, 1092, 1119
SsiI CCGC 1 cut(s) 132
SspI AATATT 1 cut(s) 1279
SspMI CTAG 5 cut(s) 213, 254, 509, 954, 1073
StyD4I CCNGG 2 cut(s) 682, 747
StyI CCWWGG 1 cut(s) 1066
TaaI ACNGT 3 cut(s) 376, 460, 850
TaiI ACGT 1 cut(s) 155
TaqI TCGA 3 cut(s) 59, 248, 385
TasI AATT 8 cut(s) 300, 394, 513, 557, 649, 1026, 1092, 1119
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 1037
Tru1I TTAA 4 cut(s) 462, 729, 960, 1221
Tru9I TTAA 4 cut(s) 462, 729, 960, 1221
TscAI CASTG 4 cut(s) 79, 131, 535, 867
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 4 cut(s) 11, 121, 186, 872
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 6 cut(s) 117, 126, 162, 432, 1007, 1073
TspRI CASTG 4 cut(s) 79, 131, 535, 867
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 4 cut(s) 36, 87, 745, 1169
XapI RAATTY 4 cut(s) 394, 513, 557, 1119
XceI RCATGY 3 cut(s) 56, 275, 1081
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 5 cut(s) 213, 254, 509, 954, 1073
Zsp2I ATGCAT 2 cut(s) 58, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.